BAC Information

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BAC

Clone NameB6Ng01-091L17
Chromosome9 (Build37)
Map Location 101,842,191 - 101,983,516
singlet/doubletdoublet
Overlap geneEphb1, 9630041A04Rik
Upstream geneStag1, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091L17.bB6Ng01-091L17.g
ACCDH903678DH903679
length1,0891,043
definitionDH903678|Mus musculus domesticus DNA, BAC clone: B6Ng01-091L17, 5' end.DH903679|Mus musculus domesticus DNA, BAC clone: B6Ng01-091L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,982,408 - 101,983,516)(101,842,191 - 101,843,246)
sequence
gaattcaatctgctaaccctgtgtttgaggatccaagacaccagcaaatg
gacacccttctgaggtctttggcattgagccagctggacttgacttccag
gcctgcccactcttgcctgcgtgccctgccaggctctcctcagggtccac
agccgtgtctcttctgccatacgagcaaggccagcatggaacaggcaggg
ccttctcttgttccttatctgtccagacagctctgacaactcagcacgaa
tatttcagctccaaagcttttgctctaccattaccacaaagtaaaagtca
tttattttgcctgcctgcccccctcgaatacagtataatatcattggcag
attgatatgtttgtagcttggtgacctggggagaagctgcagattcgatg
gtgcccgttttttactcctgggtttctgtaaaggtcacagcaaaattatt
ttatcaagtacaccacggaaggggggaatcttaatctcccattttagtta
tgcagcactcgaccttctctggagaacagctcctcttagcacacttactt
ttctgtgatgcctctctcaccactgcacaccaagagtgagagcgtaatta
gatgcctggcttctcagttggaaaggaggctgcgtcatggggatgacctg
aaagaggagagagagagaaagggtagagggaactggggtggaggcatggg
ttaggccctgggagctgtgttagattcatcccaatgaccgggccctgtag
tcaggacccgacaccagcgtggtctgatgcgctcccccactacctacctc
aggcccagccaccgcctacttttccctgtcccaggtctgggatgtagtag
gtgtctttgaagaacagtggttgcctcggcatcatattaaagttccagag
cttagcggacatggtggtatatgccgtagatcctagcatctctgtgagtt
caggctagcctcgtcaacatagtgagaactgcctcaattaatacataatt
attcagaaataaaataaaagaagatcagagttctctctacatgttcagga
tgacacatgaattgattatgatgtctgcggacgtcaggg
gaattcttagcatgctgaagaatacggaggttcagtaggaaggaatcaac
atccttgtggacagagaaaggctgaagagacccttgcttctggaccaggc
tttgcacagcatcctgtatcacttcccccagagatgctgagggtacgggt
ctgcacactgcaggcaatgatatattactcctgctcatctttgctgtgat
caaatgcctgacagaaacaagttcccagaggaatcctttatttgggcttg
cagtttcagaggtggtaatccatcttggtgtgaggggcggagctgaacaa
ctcttatcatggctggcaagaaacagaaaggcacacaggaaaaggccagg
gttaaaaacaacttccagggaccaacttcctccaactagatcccacagaa
cagacctctatgcagtacccattctgtccccagccgggtacaggggacat
agcagtaatgagactcagctcctacctcaagaagaaaagtttatctctgc
agccacccagtcaatacattttttttgtcatggtgaggacagatacagca
cacagccttctgctctcacccactctatgaagaagggcggctttccaagg
ccaagcactggtctcaggactcagccccctgctgagcactcatcttagag
gagcttccacgtgactggcatggtcatgatgtctctctccaccagattct
gtgagagaaagtctctgtgggatcacacgggaatccaggcactaaagaat
actgaccgtagtgaccacagacttagtcacaaaatgctccaatcatggtg
caggcatctcttaaagtttgaaaatgataggcttatgactaagagtgtca
cacagtgggtctgaatttcataagcctactgctccaaaggtttatgttat
agaaaatacatcggaattttaatgggccatgcatatacctatgatcatgc
tatgtatcataagaaagatctactagagtagagtggactatgtcacctca
cagaagatacactcatcttctactgttattgtgtcacttggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_101982408_101983516
seq2: B6Ng01-091L17.b_49_1137 (reverse)

seq1  CCCTGACGGTCACCGCAGACATCACTAATCAATCATTGTGTCATTCCTGA  50
      ||||||||    |||||||||||| ||||||||   ||||||| ||||||
seq2  CCCTGACG---TCCGCAGACATCA-TAATCAATTCATGTGTCA-TCCTGA  45

seq1  CCAATGTAGAGTAGAACTCTGGATCTTCTTTTTATTTTTATTTCTTGATT  100
       | |||||||| |||||||| |||||||||||   ||||||||| ||| |
seq2  AC-ATGTAGAG-AGAACTCT-GATCTTCTTTT--ATTTTATTTC-TGAAT  89

seq1  TATTTTATGTATTTATTTTTGAGGCAGGTTCTCACTATGTTGACGAGGCT  150
       |  ||||||||| |   |||||||| |||||||||||||||||||||||
seq2  AA--TTATGTATTAA---TTGAGGCA-GTTCTCACTATGTTGACGAGGCT  133

seq1  AGCCTTGAACTCACAGAGATGCTAGGATCTACGGCATATACCACCATGTC  200
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCC-TGAACTCACAGAGATGCTAGGATCTACGGCATATACCACCATGT-  181

seq1  CCGCTAAGCTCTGGAACTTTTAATATGATGCCGAGGCAACCACTGTTCTT  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCGCTAAGCTCTGGAAC-TTTAATATGATGCCGAGGCAACCACTGTTCTT  230

seq1  CAAAGACACCTACTACATCCCAGACCTGGGACAGGGAAAAGTAGGCGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACACCTACTACATCCCAGACCTGGGACAGGGAAAAGTAGGCGGTG  280

seq1  GCTGGGCCTGAGGTAGGTAGTGGGGGAGCGCATCAGACCACGCTGGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCCTGAGGTAGGTAGTGGGGGAGCGCATCAGACCACGCTGGTGTC  330

seq1  GGGTCCTGACTACAGGGCCCGGTCATTGGGATGAATCTAACACAGCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTGACTACAGGGCCCGGTCATTGGGATGAATCTAACACAGCTCCC  380

seq1  AGGGCCTAACCCATGCCTCCACCCCAGTTCCCTCTACCCTTTCTCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTAACCCATGCCTCCACCCCAGTTCCCTCTACCCTTTCTCTCTCT  430

seq1  CTCCTCTTTCAGGTCATCCCCATGACGCAGCCTCCTTTCCAACTGAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTCAGGTCATCCCCATGACGCAGCCTCCTTTCCAACTGAGAAG  480

seq1  CCAGGCATCTAATTACGCTCTCACTCTTGGTGTGCAGTGGTGAGAGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATCTAATTACGCTCTCACTCTTGGTGTGCAGTGGTGAGAGAGGC  530

seq1  ATCACAGAAAAGTAAGTGTGCTAAGAGGAGCTGTTCTCCAGAGAAGGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAAAAGTAAGTGTGCTAAGAGGAGCTGTTCTCCAGAGAAGGTCG  580

seq1  AGTGCTGCATAACTAAAATGGGAGATTAAGATTCCCCCCTTCCGTGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGCATAACTAAAATGGGAGATTAAGATTCCCCCCTTCCGTGGTGT  630

seq1  ACTTGATAAAATAATTTTGCTGTGACCTTTACAGAAACCCAGGAGTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATAAAATAATTTTGCTGTGACCTTTACAGAAACCCAGGAGTAAAA  680

seq1  AACGGGCACCATCGAATCTGCAGCTTCTCCCCAGGTCACCAAGCTACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGCACCATCGAATCTGCAGCTTCTCCCCAGGTCACCAAGCTACAAA  730

seq1  CATATCAATCTGCCAATGATATTATACTGTATTCGAGGGGGGCAGGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAATCTGCCAATGATATTATACTGTATTCGAGGGGGGCAGGCAGG  780

seq1  CAAAATAAATGACTTTTACTTTGTGGTAATGGTAGAGCAAAAGCTTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAATGACTTTTACTTTGTGGTAATGGTAGAGCAAAAGCTTTGGA  830

seq1  GCTGAAATATTCGTGCTGAGTTGTCAGAGCTGTCTGGACAGATAAGGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATATTCGTGCTGAGTTGTCAGAGCTGTCTGGACAGATAAGGAAC  880

seq1  AAGAGAAGGCCCTGCCTGTTCCATGCTGGCCTTGCTCGTATGGCAGAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGCCCTGCCTGTTCCATGCTGGCCTTGCTCGTATGGCAGAAGA  930

seq1  GACACGGCTGTGGACCCTGAGGAGAGCCTGGCAGGGCACGCAGGCAAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGGCTGTGGACCCTGAGGAGAGCCTGGCAGGGCACGCAGGCAAGAG  980

seq1  TGGGCAGGCCTGGAAGTCAAGTCCAGCTGGCTCAATGCCAAAGACCTCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGCCTGGAAGTCAAGTCCAGCTGGCTCAATGCCAAAGACCTCAG  1030

seq1  AAGGGTGTCCATTTGCTGGTGTCTTGGATCCTCAAACACAGGGTTAGCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTCCATTTGCTGGTGTCTTGGATCCTCAAACACAGGGTTAGCAG  1080

seq1  ATTGAATTC  1109
      |||||||||
seq2  ATTGAATTC  1089

seq1: chr9_101842191_101843246
seq2: B6Ng01-091L17.g_67_1109

seq1  GAATTCTTAGCATGCTGAAGAATACGGAGGTTCAGTAGGAAGGAATCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCATGCTGAAGAATACGGAGGTTCAGTAGGAAGGAATCAAC  50

seq1  ATCCTTGTGGACAGAGAAAGGCTGAAGAGACCCTTGCTTCTGGACCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTGGACAGAGAAAGGCTGAAGAGACCCTTGCTTCTGGACCAGGC  100

seq1  TTTGCACAGCATCCTGTATCACTTCCCCCAGAGATGCTGAGGGTACGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACAGCATCCTGTATCACTTCCCCCAGAGATGCTGAGGGTACGGGT  150

seq1  CTGCACACTGCAGGCAATGATATATTACTCCTGCTCATCTTTGCTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACTGCAGGCAATGATATATTACTCCTGCTCATCTTTGCTGTGAT  200

seq1  CAAATGCCTGACAGAAACAAGTTCCCAGAGGAATCCTTTATTTGGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCTGACAGAAACAAGTTCCCAGAGGAATCCTTTATTTGGGCTTG  250

seq1  CAGTTTCAGAGGTGGTAATCCATCTTGGTGTGAGGGGCGGAGCTGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCAGAGGTGGTAATCCATCTTGGTGTGAGGGGCGGAGCTGAACAA  300

seq1  CTCTTATCATGGCTGGCAAGAAACAGAAAGGCACACAGGAAAAGGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCATGGCTGGCAAGAAACAGAAAGGCACACAGGAAAAGGCCAGG  350

seq1  GTTAAAAACAACTTCCAGGGACCAACTTCCTCCAACTAGATCCCACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAACAACTTCCAGGGACCAACTTCCTCCAACTAGATCCCACAGAA  400

seq1  CAGACCTCTATGCAGTACCCATTCTGTCCCCAGCCGGGTACAGGGGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTCTATGCAGTACCCATTCTGTCCCCAGCCGGGTACAGGGGACAT  450

seq1  AGCAGTAATGAGACTCAGCTCCTACCTCAAGAAGAAAAGTTTATCTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAATGAGACTCAGCTCCTACCTCAAGAAGAAAAGTTTATCTCTGC  500

seq1  AGCCACCCAGTCAATACATTTTTTTTGTCATGGTGAGGACAGATACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCCAGTCAATACATTTTTTTTGTCATGGTGAGGACAGATACAGCA  550

seq1  CACAGCCTTCTGCTCTCACCCACTCTATGAAGAAGGGCGGCTTTCCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTTCTGCTCTCACCCACTCTATGAAGAAGGGCGGCTTTCCAAGG  600

seq1  CCAAGCACTGGTCTCAGGACTCAGCCCCCTGCTGAGCACTCATCTTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACTGGTCTCAGGACTCAGCCCCCTGCTGAGCACTCATCTTAGAG  650

seq1  GAGCTTCCACGTGACTGGCATGGTCATGATGTCTCTCTCCACCAGATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCCACGTGACTGGCATGGTCATGATGTCTCTCTCCACCAGATTCT  700

seq1  GTGAGAGAAAGTCTCTGTGGGATCACACGGGAATCCAGGCACTAAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAAAGTCTCTGTGGGATCACACGGGAATCCAGGCACTAAAGAAT  750

seq1  ACTGACCGTAGTGACCACAGACTTAGTCACAAAATGCTCCAATCATGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCGTAGTGACCACAGACTTAGTCACAAAATGCTCCAATCATGGTG  800

seq1  CAGGCATCTCTTAAAGTTTGAAAATGATAGGCTTATGACTAAGAGTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCTCTTAAAGTTTGAAAATGATAGGCTTATGACTAAGAGTGTCA  850

seq1  CACAGTGGGTCTGAATTTCATAAGCCTACTGCTCCAAAAGGTTTATGTTA  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACAGTGGGTCTGAATTTCATAAGCCTACTGCTCC-AAAGGTTTATGTTA  899

seq1  TAGAAAATACATCGGAATTTTAATGGGCCATGCATATAACCTATTGATCA  950
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  TAGAAAATACATCGGAATTTTAATGGGCCATGCATAT-ACCTA-TGATCA  947

seq1  TGCTATTGTTATCATTAAAGAAAGATCTACTAAGAGTTAGGAGTTGGACT  1000
      ||||||   ||||||  |||||||||||||| |||||   ||| ||||||
seq2  TGCTAT--GTATCAT--AAGAAAGATCTACT-AGAGT--AGAG-TGGACT  989

seq1  ATGTCACC-CACAAGAAGATACACCCATCTTCTAACCTGTTATTGTGTCA  1049
      |||||||| ||| ||||||||||| |||||||||  ||||||||||||||
seq2  ATGTCACCTCAC-AGAAGATACACTCATCTTCTA--CTGTTATTGTGTCA  1036

seq1  CTTGGAT  1056
      |||||||
seq2  CTTGGAT  1043