BAC Information

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BAC

Clone NameB6Ng01-092D06
Chromosome9 (Build37)
Map Location 87,340,163 - 87,341,240
singlet/doubletsinglet
Overlap genenone
Upstream gene2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
Downstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092D06.bB6Ng01-092D06.g
ACCDH904028DH904029
length1,1611,079
definitionDH904028|Mus musculus domesticus DNA, BAC clone: B6Ng01-092D06, 5' end.DH904029|Mus musculus domesticus DNA, BAC clone: B6Ng01-092D06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagaaaaaatgttcaac
atccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacc
tcacaccagtcagaatgtctaagatcaaaaattcaggtgacagcagatgc
tggcgaggatgtggagaaagaggaacactcctccattgttggtgggattg
caggcttgtacaaccactctggaaatccgtctggcggttcctcagaaaat
tggacatagtactaccggaggatccagcaatacctctcctgggcatatat
ccagaagatgccccaactggtaagaaggacacatgctccactatgttcat
agcagccttatttataatagccagaaactggaaagaacccagatgcccct
caacagaggaatggatacagaaaatgtggtacatctacacaatggagtac
tactcagctattaaaaagaatgaatttatgaaattcctagccaaatggat
ggacctggagggcatcatcctgagtgaggtaacacattcacaaaggaact
cacacaatatgtactcactgataagtggatattagcccaaaacctaggat
acccaagatataagatacaatttcctaaacacatgaaactcaagaaaaat
gaagactgaagtgtggacactatgcccctccttagaagtgggaacaaaac
acccttggaaggagttacagagacaaagtttggagctgagatgaaaggat
ggaccatgtagagactgccttatccagggatccaccccataatcagcatc
caaacgctgacaccattgcatacactagcaagattttatcgaaaggaccc
agatgaagctgtctcttgtgagactatgccagggcctagcaaacacagaa
gtggatgcccacagtcagctaatggatggatcacagggctcccaatggag
gagctagagaaagtacccaaggagctaagggatctgcaccctatagtgat
caacatatgaactaaccagtaccccggagctcttgactctagctgcaatg
tatcaaagatgctagtcgcatcactgaaggaaggccattgaacaccaaac
ttatattgcctgaccagggaacgccaaggccaaaagggaatgggccgggt
agtgagatggg
gaattccaggcatatctgaaataattgaaattatttgaattgaaagaaga
atgttcaatccacaagggtcttgtgatggctgttcttggttggcgacttg
accacatgtagaattagctgaaactcaggaggctggatacacctgtgagg
aagatttttttttcttattaatttattcgaagtaggaaggttcactttta
atctggatcttttggttgggcagatccattttaaatgtggggcatgcctt
ctgcaggcagcatatataatggacatggaaggaggaagcttgttctctgt
cttgcctcacagacaggtctattcctttattatcattagagacttcttgg
aaattctggtggataatgaagatcagctgagatatccagcttcatggatt
gaataagtactggattcttggatcttccattgctagacagctattgttga
actagctagaccacagcttgtggtctatagatggagattctatatggatg
aagattaattctgcagctcagttcctctagagaaccctgacacatacatc
tttcattctaaggtggtaatctagaatccacttttccagtgatacaacag
gcacgctcttcctttgtgcctctgtctctgtcctctctgtgtctggaatg
ctcattctttagacagttccaacacaaacaccctgcttttccaagtgtca
cctgcctttgcagtgaagtcttcctgagcatcctgacctgaaagcacaaa
taccaacaccctcacctggtcctaattcttccaggtaacttcctcttgca
tgaccaactttatcttctttttagcacttcttatagtcaggcagcctgtt
cgatgtacatattgattatctagccattgtttattctcctccaagagaag
tggctttgggattgcagagatctttgctttgcttgttttctgatctcagc
tatggtgatgtctaagggccctaggagaatacatgctcaaagattgtatg
gctgaagcgttctcgaagattatgttcagtctcagttttgttactgtaaa
acacggctactacacaacacacacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_87340163_87341240
seq2: B6Ng01-092D06.g_68_1146

seq1  GAATTCCAGGCATATCTGAAATAATTGAAATTATTTGAATTGAAAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCATATCTGAAATAATTGAAATTATTTGAATTGAAAGAAGA  50

seq1  ATGTTCAATCCACAAGGGTCTTGTGATGGCTGTTCTTGGTTGGCGACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAATCCACAAGGGTCTTGTGATGGCTGTTCTTGGTTGGCGACTTG  100

seq1  ACCACATGTAGAATTAGCTGAAACTCAGGAGGCTGGATACACCTGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGTAGAATTAGCTGAAACTCAGGAGGCTGGATACACCTGTGAGG  150

seq1  AAGATTTTTTTTTCTTATTAATTTATTCGAAGTAGGAAGGTTCACTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTTTTTCTTATTAATTTATTCGAAGTAGGAAGGTTCACTTTTA  200

seq1  ATCTGGATCTTTTGGTTGGGCAGATCCATTTTAAATGTGGGGCATGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGATCTTTTGGTTGGGCAGATCCATTTTAAATGTGGGGCATGCCTT  250

seq1  CTGCAGGCAGCATATATAATGGACATGGAAGGAGGAAGCTTGTTCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCAGCATATATAATGGACATGGAAGGAGGAAGCTTGTTCTCTGT  300

seq1  CTTGCCTCACAGACAGGTCTATTCCTTTATTATCATTAGAGACTTCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCACAGACAGGTCTATTCCTTTATTATCATTAGAGACTTCTTGG  350

seq1  AAATTCTGGTGGATAATGAAGATCAGCTGAGATATCCAGCTTCATGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGGTGGATAATGAAGATCAGCTGAGATATCCAGCTTCATGGATT  400

seq1  GAATAAGTACTGGATTCTTGGATCTTCCATTGCTAGACAGCTATTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTACTGGATTCTTGGATCTTCCATTGCTAGACAGCTATTGTTGA  450

seq1  ACTAGCTAGACCACAGCTTGTGGTCTATAGATGGAGATTCTATATGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTAGACCACAGCTTGTGGTCTATAGATGGAGATTCTATATGGATG  500

seq1  AAGATTAATTCTGCAGCTCAGTTCCTCTAGAGAACCCTGACACATACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAATTCTGCAGCTCAGTTCCTCTAGAGAACCCTGACACATACATC  550

seq1  TTTCATTCTAAGGTGGTAATCTAGAATCCACTTTTCCAGTGATACAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTAAGGTGGTAATCTAGAATCCACTTTTCCAGTGATACAACAG  600

seq1  GCACGCTCTTCCTTTGTGCCTCTGTCTCTGTCCTCTCTGTGTCTGGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTCTTCCTTTGTGCCTCTGTCTCTGTCCTCTCTGTGTCTGGAATG  650

seq1  CTCATTCTTTAGACAGTTCCAACACAAACACCCTGCTTTTCCAAGTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTTTAGACAGTTCCAACACAAACACCCTGCTTTTCCAAGTGTCA  700

seq1  CCTGCCTTTGCAGTGAAGTCTTCCTGAGCATCCTGACCTGAAAGCACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTTGCAGTGAAGTCTTCCTGAGCATCCTGACCTGAAAGCACAAA  750

seq1  TACCAACACCCTCACCTGGTCCTAATTCTTCCAGGTAACTTCCTCTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACACCCTCACCTGGTCCTAATTCTTCCAGGTAACTTCCTCTTGCA  800

seq1  TGACCAACTTTATCTTCTTTTTAGCACTTCTTATAGTCAGGCAGCCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAACTTTATCTTCTTTTTAGCACTTCTTATAGTCAGGCAGCCTGTT  850

seq1  CGATGTACATATTGATTATCTAGCCATTGTTTATTCTCCTCCAAAGAGAA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGATGTACATATTGATTATCTAGCCATTGTTTATTCTCCTCC-AAGAGAA  899

seq1  GTGGCTTTGGGATTGCAGAGATCTTTGCTTTGCTTGTTTTCTGATCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTGGGATTGCAGAGATCTTTGCTTTGCTTGTTTTCTGATCTCAG  949

seq1  CTATGGTGATGTCTAAGGGGCCCTAGGAGAATACATGCTCAAAGATTGTA  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTATGGTGATGTCTAA-GGGCCCTAGGAGAATACATGCTCAAAGATTGTA  998

seq1  TGGCTGAAGCGGTTCTCGAAGATTATGTTCCAGGCCTCAGTTTTTGTTTA  1050
      |||||||||| |||||||||||||||||||   | |||||||||   |||
seq2  TGGCTGAAGC-GTTCTCGAAGATTATGTTC--AGTCTCAGTTTT--GTTA  1043

seq1  CTGTAAAACAC-------ACGC-ACACACACACACA  1078
      |||||||||||       || | |||||||||||||
seq2  CTGTAAAACACGGCTACTACACAACACACACACACA  1079