BAC Information

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BAC

Clone NameB6Ng01-092I24
Chromosome9 (Build37)
Map Location 44,360,370 - 44,492,429
singlet/doubletdoublet
Overlap geneDdx6, LOC667406, LOC100042660, Treh
Upstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1
Downstream genePhldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092I24.bB6Ng01-092I24.g
ACCDH904292DH904293
length1,1041,155
definitionDH904292|Mus musculus domesticus DNA, BAC clone: B6Ng01-092I24, 5' end.DH904293|Mus musculus domesticus DNA, BAC clone: B6Ng01-092I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,360,370 - 44,361,470)(44,491,269 - 44,492,429)
sequence
gaattctgtaatttccggttccggggtggcccagctccctgtgccctggt
ccacagcagtggaggccccgccccctccattgtgctgacttgtgaaagga
agggatattgttgacacattccttttgccgttgagtcatagaaatatgga
gcttccgccttgctcactctgaatcctcaagggaaagccagaaaagctgg
caaggcagtccttagggagagccaccagaaggctagattataacagattc
tgtagggctgatagcgctgtggtagtcacctgggggagcactgtgggaat
ggaccgtagccctgccaagggtaagaacacagcatgaagtgctttatgtt
cacagaaacacctttggagcccaggtttacagcaggttcggggcctgaag
tatttaccaggtcagtgggaggccgcatcccactggagtgttgatcacct
ttgcaaagacatcaggccagagcagcacctgtgagtatagtcgccagatt
tctaaacattcttgcccttctgcactctaaggtctgtggacagacaaaca
agccatgtgaatgcggctctttctgtatctcttcaattcttccacaaagg
tggtacagttattatttactgtctccatatgcagactgttctagaggctt
ccactcggcctttctagtataaaaatcagtgtgggattctacccgctggg
aagtatattttgttcactcagatccttacagcattcatctgttttctgtt
gctataataaaatacctgaggcaggctaccttataaagaaaataagtttc
ttttggactattgttttggaggtgtcagattgaagaagcttatgcactga
gagcctttcctgctgaccctttgatatcccatcactcccactgagttcac
tcacggagtctgttttataacggaatttcccactcatgccttaccttcaa
agaatagccaccacagagcttatttaaagtgatgatacagctgggtgttg
tagcacacatttaatcccagaaattcatggggcagaggcagatggatctc
agttaatttagtcagcttggtctactataaagagttccaggaataacagg
gcta
gaattcatggctccttgaactaacatccctgccctgctccctgggacttg
ctgctccgtctcccgggtccaccattctgatggctcttgctcggaggagg
ctaatgagagcatcagggaatggagagagagctgatgtatgcaccgaggt
acccttcaaaaaggacagcagtgtgaacgtgtgtggtcctatcatcctct
ctctcactctgtgtctgtctccgtctgtgtctgtctgtctctgtctcttg
tctctctctatctctgtctctcttcatgtctccataggagtgaaggcttg
agctggctgaggagacctacctccagtcccatggccaggctgatgcagga
gcccacactggcctgcctcctgacacaggatgctcacctagtctggagta
gaagttactcatcagttcctctgcttggcacaggaacgcgttcagatcag
cgggtaccattttgctggttcggatgctgctgagcaaatcagggtctggg
cctccaacaagccagcgtgaagagaagtcccagccagactcagccccagc
cttgagctcagcccacagagtctctcggtcccctgtgaggacaaaacagc
aaccccaggccgcaactgacttcaggacaaagcagccacagatcaaagcc
agacagtcacagaggctaagcaccgccaccccgtccgtctgtctgtcagt
cctccctcctcctgttcctgcttaccttctggcacagagtttgccaattc
tgcgtctttcctgtaggactctggcctagccaagagaaggacaacagccc
aacattgggaggtgctaagccctctctgccagccagaaagctgggtcatc
ttgactcaaaaggtaccctgacacccgacacgcacaggctctcaggtcta
agtcacccctccagtttgaggtgcagagatgctcatgtcagagtgagctg
atggcagccagttctccctgggtcctcataggacataagtagcgatttag
aaatagctttgtcctcctgagactacagaagacggtcttgttcacagtca
gagtcaagttcagaaggctagaagtcccatattctctcttgggtggaagc
aggacaaaccctcagccgggtacaaagccctaggcctgggccctggaaag
tctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_44360370_44361470
seq2: B6Ng01-092I24.b_47_1150

seq1  GAATTCTGTAATTTCCGGTTCCGGGGTGGCCCAGCTCCCTGTGCCCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAATTTCCGGTTCCGGGGTGGCCCAGCTCCCTGTGCCCTGGT  50

seq1  CCACAGCAGTGGAGGCCCCGCCCCCTCCATTGTGCTGACTTGTGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAGTGGAGGCCCCGCCCCCTCCATTGTGCTGACTTGTGAAAGGA  100

seq1  AGGGATATTGTTGACACATTCCTTTTGCCGTTGAGTCATAGAAATATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATTGTTGACACATTCCTTTTGCCGTTGAGTCATAGAAATATGGA  150

seq1  GCTTCCGCCTTGCTCACTCTGAATCCTCAAGGGAAAGCCAGAAAAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCGCCTTGCTCACTCTGAATCCTCAAGGGAAAGCCAGAAAAGCTGG  200

seq1  CAAGGCAGTCCTTAGGGAGAGCCACCAGAAGGCTAGATTATAACAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGTCCTTAGGGAGAGCCACCAGAAGGCTAGATTATAACAGATTC  250

seq1  TGTAGGGCTGATAGCGCTGTGGTAGTCACCTGGGGGAGCACTGTGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGCTGATAGCGCTGTGGTAGTCACCTGGGGGAGCACTGTGGGAAT  300

seq1  GGACCGTAGCCCTGCCAAGGGTAAGAACACAGCATGAAGTGCTTTATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGTAGCCCTGCCAAGGGTAAGAACACAGCATGAAGTGCTTTATGTT  350

seq1  CACAGAAACACCTTTGGAGCCCAGGTTTACAGCAGGTTCGGGGCCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAACACCTTTGGAGCCCAGGTTTACAGCAGGTTCGGGGCCTGAAG  400

seq1  TATTTACCAGGTCAGTGGGAGGCCGCATCCCACTGGAGTGTTGATCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCAGGTCAGTGGGAGGCCGCATCCCACTGGAGTGTTGATCACCT  450

seq1  TTGCAAAGACATCAGGCCAGAGCAGCACCTGTGAGTATAGTCGCCAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGACATCAGGCCAGAGCAGCACCTGTGAGTATAGTCGCCAGATT  500

seq1  TCTAAACATTCTTGCCCTTCTGCACTCTAAGGTCTGTGGACAGACAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACATTCTTGCCCTTCTGCACTCTAAGGTCTGTGGACAGACAAACA  550

seq1  AGCCATGTGAATGCGGCTCTTTCTGTATCTCTTCAATTCTTCCACAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGTGAATGCGGCTCTTTCTGTATCTCTTCAATTCTTCCACAAAGG  600

seq1  TGGTACAGTTATTATTTACTGTCTCCATATGCAGACTGTTCTAGAGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGTTATTATTTACTGTCTCCATATGCAGACTGTTCTAGAGGCTT  650

seq1  CCACTCGGCCTTTCTAGTATAAAAATCAGTGTGGGATTCTACCCGCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCGGCCTTTCTAGTATAAAAATCAGTGTGGGATTCTACCCGCTGGG  700

seq1  AAGTATATTTTGTTCACTCAGATCCTTACAGCATTCATCTGTTTTCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATTTTGTTCACTCAGATCCTTACAGCATTCATCTGTTTTCTGTT  750

seq1  GCTATAATAAAATACCTGAGGCAGGCTACCTTATAAAGAAAATAAGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATAAAATACCTGAGGCAGGCTACCTTATAAAGAAAATAAGTTTC  800

seq1  TTTTGGACTATTGTTTTGGAGGTGTCAGATTGAAGAAGCTTATGCACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGACTATTGTTTTGGAGGTGTCAGATTGAAGAAGCTTATGCACTGA  850

seq1  GAGCC-TTCCTGCTGACCCTTTGATATCCCATCACTCCCACTGAGTTCAC  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTCCTGCTGACCCTTTGATATCCCATCACTCCCACTGAGTTCAC  900

seq1  TCAGGGAGTCTGTTTTATAACGGAATTTCCCACTCATGCCTTACCTTCAA  949
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGAGTCTGTTTTATAACGGAATTTCCCACTCATGCCTTACCTTCAA  950

seq1  AGAATAGCCACCACAGAGCTTATTTAAAGTGATGATACAGCTGGGTGTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGCCACCACAGAGCTTATTTAAAGTGATGATACAGCTGGGTGTTG  1000

seq1  TAGCACACATTTAATCCCAG-AATTCATGGGGCAGAGGCAGATGGATCTC  1048
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGCACACATTTAATCCCAGAAATTCATGGGGCAGAGGCAGATGGATCTC  1050

seq1  AGTAAATTTAGTCAGCCTGGTCTAC-ATAGAGAGTTCCAGGATAACCAGG  1097
      ||| |||||||||||| |||||||| ||| ||||||||||||  | ||||
seq2  AGTTAATTTAGTCAGCTTGGTCTACTATAAAGAGTTCCAGGAATAACAGG  1100

seq1  GCTA  1101
      ||||
seq2  GCTA  1104

seq1: chr9_44491269_44492429
seq2: B6Ng01-092I24.g_69_1223 (reverse)

seq1  GGAGACTTCCCAGGGCCAAGGGCAATGGCTTTGTACCCGGGCTGAGGTGT  50
      |||||||| |||||||| ||| | | |||||||||||| ||||||||  |
seq2  GGAGACTTTCCAGGGCCCAGGCCTAGGGCTTTGTACCC-GGCTGAGGGTT  49

seq1  TG-CTTGCTTCAACCC-AGGGAGAATATTGGGAC-TCTAGCC-TCTGAAC  96
      || | |||||| |||| || ||||||| |||||| ||||||| |||||||
seq2  TGTCCTGCTTCCACCCAAGAGAGAATA-TGGGACTTCTAGCCTTCTGAAC  98

seq1  TGGACTTCTGGACTGTGAACAGGACTGTC-TCTGTAGTCTCAGGAGGACA  145
      | ||| ||| ||||||||||| ||| ||| ||||||||||||||||||||
seq2  TTGAC-TCT-GACTGTGAACAAGACCGTCTTCTGTAGTCTCAGGAGGACA  146

seq1  AAGCTATGTCTTAAATCGCTAC-TATGTCCCTTATGGGGGACCCAGGTGA  194
      ||||||| || ||||||||||| |||||||  ||| | ||||||||| ||
seq2  AAGCTATTTC-TAAATCGCTACTTATGTCC--TAT-GAGGACCCAGG-GA  191

seq1  GAAACTGGCCTGCCATCAGCTCACTCTGACATGAGCATCTCTGCAACCTC  244
      | |||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  G-AACTGG-CTGCCATCAGCTCACTCTGACATGAGCATCTCTGC-ACCTC  238

seq1  AAACTGGAGGGGTGACTTAGACCCTGAGAGCCTGTGCGTGTCGGGTGTCA  294
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAACTGGAGGGGTGACTTAGA-CCTGAGAGCCTGTGCGTGTCGGGTGTCA  287

seq1  GGGTACCTTTTGAGTCAAGATGACCCAGCTTTCTGGCTGGCAGAG-GGGC  343
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGTACCTTTTGAGTCAAGATGACCCAGCTTTCTGGCTGGCAGAGAGGGC  337

seq1  TTAGCACCTCCCAATGTTGGGCTGTTGTCCTTCTCTTGGCTAGGCCAGAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACCTCCCAATGTTGGGCTGTTGTCCTTCTCTTGGCTAGGCCAGAG  387

seq1  TCCTACAGGAAAGACGCAGAATTGGCAAACTCTGTGCCAGAAGGTAAGCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGGAAAGACGCAGAATTGGCAAACTCTGTGCCAGAAGGTAAGCA  437

seq1  GGAACAGGAGGAGGGAGGACTGACAGACAGACGGACGGGGTGGCGGTGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGAGGAGGGAGGACTGACAGACAGACGGACGGGGTGGCGGTGCT  487

seq1  TAGCCTCTGTGACTGTCTGGCTTTGATCTGTGGCTGCTTTGTCCTGAAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCTGTGACTGTCTGGCTTTGATCTGTGGCTGCTTTGTCCTGAAGT  537

seq1  CAGTTGCGGCCTGGGGTTGCTGTTTTGTCCTCACAGGGGACCGAGAGACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCGGCCTGGGGTTGCTGTTTTGTCCTCACAGGGGACCGAGAGACT  587

seq1  CTGTGGGCTGAGCTCAAGGCTGGGGCTGAGTCTGGCTGGGACTTCTCTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCTGAGCTCAAGGCTGGGGCTGAGTCTGGCTGGGACTTCTCTTC  637

seq1  ACGCTGGCTTGTTGGAGGCCCAGACCCTGATTTGCTCAGCAGCATCCGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGCTTGTTGGAGGCCCAGACCCTGATTTGCTCAGCAGCATCCGAA  687

seq1  CCAGCAAAATGGTACCCGCTGATCTGAACGCGTTCCTGTGCCAAGCAGAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAATGGTACCCGCTGATCTGAACGCGTTCCTGTGCCAAGCAGAG  737

seq1  GAACTGATGAGTAACTTCTACTCCAGACTAGGTGAGCATCCTGTGTCAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATGAGTAACTTCTACTCCAGACTAGGTGAGCATCCTGTGTCAGG  787

seq1  AGGCAGGCCAGTGTGGGCTCCTGCATCAGCCTGGCCATGGGACTGGAGGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCCAGTGTGGGCTCCTGCATCAGCCTGGCCATGGGACTGGAGGT  837

seq1  AGGTCTCCTCAGCCAGCTCAAGCCTTCACTCCTATGGAGACATGAAGAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCCTCAGCCAGCTCAAGCCTTCACTCCTATGGAGACATGAAGAGA  887

seq1  GACAGAGATAGAGAGAGACAAGAGACAGAGACAGACAGACACAGACGGAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGATAGAGAGAGACAAGAGACAGAGACAGACAGACACAGACGGAG  937

seq1  ACAGACACAGAGTGAGAGAGAGGATGATAGGACCACACACGTTCACACTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACAGAGTGAGAGAGAGGATGATAGGACCACACACGTTCACACTG  987

seq1  CTGTCCTTTTTGAAGGGTACCTCGGTGCATACATCAGCTCTCTCTCCATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTTTGAAGGGTACCTCGGTGCATACATCAGCTCTCTCTCCATT  1037

seq1  CCCTGATGCTCTCATTAGCCTCCTCCGAGCAAGAGCCATCAGAATGGTGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGCTCTCATTAGCCTCCTCCGAGCAAGAGCCATCAGAATGGTGG  1087

seq1  ACCCGGGAGACGGAGCAGCAAGTCCCAGGGAGCAGGGCAGGGATGTTAGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGGAGACGGAGCAGCAAGTCCCAGGGAGCAGGGCAGGGATGTTAGT  1137

seq1  TCAAGGAGCCATGAATTC  1161
      ||||||||||||||||||
seq2  TCAAGGAGCCATGAATTC  1155