BAC Information

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BAC

Clone NameB6Ng01-093M01
Chromosome9 (Build37)
Map Location 71,095,231 - 71,261,071
singlet/doubletdoublet
Overlap geneAldh1a2
Upstream geneMyo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660
Downstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093M01.bB6Ng01-093M01.g
ACCDH905150DH905151
length1,1751,089
definitionDH905150|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M01, 5' end.DH905151|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,095,231 - 71,096,321)(71,259,976 - 71,261,071)
sequence
gaattcctagttagtcaataagcttagaaaaggaaataaaaatatatagt
ctaagagggaagaaatgaaatggcctttgtttatagatgaagtgattgtt
gtaaagtctctaggacactacccctgactccagaagaggaagattcttaa
ggcgaatgagagattacagggttgcaggagcaacctttctataagaaaca
agcactggaacttacattttgaaacatacagtaccactgagggaataggc
agatgagagagcttggcttcagtagctttagaaaactcttttctttataa
gccatagtttagctaacataattcaaaagagatctaagcaagtggagaga
tatcccatggctaggaagacatagtatgttagaagtcagctcgttttacc
ttgatctatagattaaataaaataacaaaagttttattaagttactttgt
agccatcagcgaatagattctaaggtgaatatggaaaggcaaaagaccca
gggtagttaatattcaaagaggacaaaattggaaggctagcattatccat
cttaagactgactaactaaaaaggtagtactgagacagtatggtccaaaa
aaaagtcaataaataacaatatttatagaggcaaagatgatggagctaag
acatacattggcaagctcacttcaaggtggaaggctgaaacagatttctc
agttatcatagaacagacagatacactgttgagtataaagataaacatcc
tatttcacaggattgagatgaggatcacaaagagagagatgcctctaata
attactataccagggcaagaaaagcaaagcagatacgtaaaactaggtga
atgaaaagtccagctaattgttaactctagtagaacgacagtcaagctgg
aggtgggatcacagagaagcactcagagcctcagtggtactaatagtcta
gcgtgtggatgatgtgttcatagcgtgttccaatatgatatagctcagct
tgtgctttgtaaccagatccttttgtataaaatgcacagaatgtaataaa
acgtctgcccaataaagtcttcatttttcagtatgtttgaagttttgttc
ttgggtgcagaaggaataaatcaatctaactggcaagaatgtttgaacag
ggattcatgtccctccgacagacat
gaattccagttagaaagctttgtcccatgaacagtggtgttttgctcagc
tttgcttcaaactgatagccttgggagatgggagaaaggcaagctaggag
accagttctgttctgagttgggccagggtcactctttgggaccacagagg
gccctctcatttctggggctttcagaacatctgtctctatttccttgaaa
acttcaggagattgtagttctgactgtgctatcaaataaggggaccctgc
aaggcaaaaggcatgaccagaggcaaaacctaaacaaacaaacaaacaaa
aacggacacagagcatagaaaagataggggaaagtcagaagagagacctc
tgaggaagaggcctctaggagagaggagaaaggccagcactggaaggtgg
agacagagctggaggagagcaaggctcctctccacacctgtaactctact
ccttgttggttctcttcaggggccctcatgctgcatgcagttccattttt
taagtggacccctttagagccttcagccctaaagaagcttaaaaaaaaaa
agtacaaataaacctgtttctagctttgagcatcaaagacaaacaaccta
aaggcttgggagttggaagacttgagaaaggatgaaagacccaggacagc
gagtccccagcctctgttctgtgcccacatcatgcttagcctaagcctga
ggttggaggcacacaagacttcagagaaacagcctcattctggaagctgc
atcacagtggccaagaatggagggaactcaggaagtccctgttccatggt
agaaactaaccctgggtcctagagaaaacttaagaaaaactacagggtga
gaactggatgactctcagaatcagtattgattctggagggctgaactgaa
caactctagggactgatggtcacaatccctcagtattgtacaaactgtag
attttccctcctactgtcctgtggtttgttttaaactcaaatttaaacgg
aattaaaaaattaaatttaaattgttttgtatctaaggggatgtccctca
aggtaagagcacttgctgcttcttgagaagacctgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_71095231_71096321
seq2: B6Ng01-093M01.b_140_1220

seq1  ATTGTTGTAAAGTCTCTAGGACACTACCCCTGACTCCAGAAGAGGAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTAAAGTCTCTAGGACACTACCCCTGACTCCAGAAGAGGAAGAT  50

seq1  TCTTAAGGCGAATGAGAGATTACAGGGTTGCAGGAGCAACCTTTCTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGCGAATGAGAGATTACAGGGTTGCAGGAGCAACCTTTCTATAA  100

seq1  GAAACAAGCACTGGAACTTACATTTTGAAACATACAGTACCACTGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGCACTGGAACTTACATTTTGAAACATACAGTACCACTGAGGGA  150

seq1  ATAGGCAGATGAGAGAGCTTGGCTTCAGTAGCTTTAGAAAACTCTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAGATGAGAGAGCTTGGCTTCAGTAGCTTTAGAAAACTCTTTTCT  200

seq1  TTATAAGCCATAGTTTAGCTAACATAATTCAAAAGAGATCTAAGCAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGCCATAGTTTAGCTAACATAATTCAAAAGAGATCTAAGCAAGTG  250

seq1  GAGAGATATCCCATGGCTAGGAAGACATAGTATGTTAGAAGTCAGCTCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATATCCCATGGCTAGGAAGACATAGTATGTTAGAAGTCAGCTCGT  300

seq1  TTTACCTTGATCTATAGATTAAATAAAATAACAAAAGTTTTATTAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTGATCTATAGATTAAATAAAATAACAAAAGTTTTATTAAGTTA  350

seq1  CTTTGTAGCCATCAGCGAATAGATTCTAAGGTGAATATGGAAAGGCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGCCATCAGCGAATAGATTCTAAGGTGAATATGGAAAGGCAAAA  400

seq1  GACCCAGGGTAGTTAATATTCAAAGAGGACAAAATTGGAAGGCTAGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGGTAGTTAATATTCAAAGAGGACAAAATTGGAAGGCTAGCATT  450

seq1  ATCCATCTTAAGACTGACTAACTAAAAAGGTAGTACTGAGACAGTATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTTAAGACTGACTAACTAAAAAGGTAGTACTGAGACAGTATGGT  500

seq1  CCAAAAAAAAGTCAATAAATAACAATATTTATAGAGGCAAAGATGATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAGTCAATAAATAACAATATTTATAGAGGCAAAGATGATGGA  550

seq1  GCTAAGACATACATTGGCAAGCTCACTTCAAGGTGGAAGGCTGAAACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGACATACATTGGCAAGCTCACTTCAAGGTGGAAGGCTGAAACAGA  600

seq1  TTTCTCAGTTATCATAGAACAGACAGATACACTGTTGAGTATAAAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGTTATCATAGAACAGACAGATACACTGTTGAGTATAAAGATAA  650

seq1  ACATCCTATTTCACAGGATTGAGATGAGGATCACAAAGAGAGAGATGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTATTTCACAGGATTGAGATGAGGATCACAAAGAGAGAGATGCCT  700

seq1  CTAATAATTACTATACCAGGGCAAGAAAAGCAAAGCAGATACGTAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATTACTATACCAGGGCAAGAAAAGCAAAGCAGATACGTAAAACT  750

seq1  AGGTGAATGAAAAGTCCAGCTAATTGTTAACTCTAGTAGAAGGACAGGTC  800
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  AGGTGAATGAAAAGTCCAGCTAATTGTTAACTCTAGTAGAACGACA-GTC  799

seq1  AAGCTGGAGGTGGGATCACAGAGAAGCACTCAGGAGCCTCAGTGGTACTA  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGCTGGAGGTGGGATCACAGAGAAGCACTCA-GAGCCTCAGTGGTACTA  848

seq1  ATAGTCTAGCGTGTGGATGATGTGTTCATAGCGTGTTCCAATATGATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTAGCGTGTGGATGATGTGTTCATAGCGTGTTCCAATATGATATA  898

seq1  GCTCAGCTTGTGCTTTGTTACACAGATCCTTTTGTATAAAATGCAACAGA  950
      |||||||||||||||||| || |||||||||||||||||||||| |||||
seq2  GCTCAGCTTGTGCTTTGTAAC-CAGATCCTTTTGTATAAAATGC-ACAGA  946

seq1  ATGTAATAAAAACGTCTTGCCCAAATAAAGTCTTCATTCTTCAGTATGTT  1000
      ||||||| |||||||| ||||| ||||||||||||||| |||||||||||
seq2  ATGTAAT-AAAACGTC-TGCCC-AATAAAGTCTTCATTTTTCAGTATGTT  993

seq1  TGAGGTTTTTGTCTT-GGTGCAGAGGTATTATATTTCTAATCTTATCTGC  1049
      ||| |||||  |||| |||||||| | | || ||    ||||| |   ||
seq2  TGAAGTTTTGTTCTTGGGTGCAGAAGGAATAAAT---CAATCTAACTGGC  1040

seq1  AAAGATGTTAG-ACAGTGATTCATGTCCCCTCCCGACAGACAT  1091
      ||  ||||| | |||| ||||||||||||   |||||||||||
seq2  AAGAATGTTTGAACAGGGATTCATGTCCC--TCCGACAGACAT  1081

seq1: chr9_71259976_71261071
seq2: B6Ng01-093M01.g_68_1156 (reverse)

seq1  CACTCAGGTCCTCTTCAAG-AGCAGCAAGTGCTCTTTACCTCTGA--GAC  47
      |||||||||| || ||||| |||||||||||||| |||||| |||  |||
seq2  CACTCAGGTCTTC-TCAAGAAGCAGCAAGTGCTC-TTACCT-TGAGGGAC  47

seq1  ATTCCCCCTAGATACAAAACAATTTTAAATTTAATTTTTTAAAATTTCGT  97
      | ||||| |||||||||||||| |||||||||||||||||  |||| |||
seq2  A-TCCCCTTAGATACAAAACAA-TTTAAATTTAATTTTTT--AATTCCGT  93

seq1  TTAAATTTTGAAGTTTAAAACAAA-CACAGGACAGTAGGAGGGAAAATTC  146
      ||||||||   ||||||||||||| |||||||||||||||||||||| ||
seq2  TTAAATTT--GAGTTTAAAACAAACCACAGGACAGTAGGAGGGAAAA-TC  140

seq1  TACAGTTTGTACAATACTGAAGGGATTGTGACCATCAGTCCCTAGAGTTG  196
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACAGTTTGTACAATACTG-AGGGATTGTGACCATCAGTCCCTAGAGTTG  189

seq1  TTCAGTTCAGCCCTCCAGAATCAATACTGATTCTGAGAGTCATCCAGTTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCAGCCCTCCAGAATCAATACTGATTCTGAGAGTCATCCAGTTC  239

seq1  TCACCCTGTAGTTTTTCTTAAGTTTTCTCTAGGACCCAGGGTTAGTTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGTAGTTTTTCTTAAGTTTTCTCTAGGACCCAGGGTTAGTTTCT  289

seq1  ACCATGGAACAGGGACTTCCTGAGTTCCCTCCATTCTTGGCCACTGTGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGAACAGGGACTTCCTGAGTTCCCTCCATTCTTGGCCACTGTGAT  339

seq1  GCAGCTTCCAGAATGAGGCTGTTTCTCTGAAGTCTTGTGTGCCTCCAACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCCAGAATGAGGCTGTTTCTCTGAAGTCTTGTGTGCCTCCAACC  389

seq1  TCAGGCTTAGGCTAAGCATGATGTGGGCACAGAACAGAGGCTGGGGACTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTAGGCTAAGCATGATGTGGGCACAGAACAGAGGCTGGGGACTC  439

seq1  GCTGTCCTGGGTCTTTCATCCTTTCTCAAGTCTTCCAACTCCCAAGCCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGGTCTTTCATCCTTTCTCAAGTCTTCCAACTCCCAAGCCTT  489

seq1  TAGGTTGTTTGTCTTTGATGCTCAAAGCTAGAAACAGGTTTATTTGTACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTTTGTCTTTGATGCTCAAAGCTAGAAACAGGTTTATTTGTACT  539

seq1  TTTTTTTTTTAAGCTTCTTTAGGGCTGAAGGCTCTAAAGGGGTCCACTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAGCTTCTTTAGGGCTGAAGGCTCTAAAGGGGTCCACTTA  589

seq1  AAAAATGGAACTGCATGCAGCATGAGGGCCCCTGAAGAGAACCAACAAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGAACTGCATGCAGCATGAGGGCCCCTGAAGAGAACCAACAAGG  639

seq1  AGTAGAGTTACAGGTGTGGAGAGGAGCCTTGCTCTCCTCCAGCTCTGTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGTTACAGGTGTGGAGAGGAGCCTTGCTCTCCTCCAGCTCTGTCT  689

seq1  CCACCTTCCAGTGCTGGCCTTTCTCCTCTCTCCTAGAGGCCTCTTCCTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTCCAGTGCTGGCCTTTCTCCTCTCTCCTAGAGGCCTCTTCCTCA  739

seq1  GAGGTCTCTCTTCTGACTTTCCCCTATCTTTTCTATGCTCTGTGTCCGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTCTCTTCTGACTTTCCCCTATCTTTTCTATGCTCTGTGTCCGTT  789

seq1  TTTGTTTGTTTGTTTGTTTAGGTTTTGCCTCTGGTCATGCCTTTTGCCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTAGGTTTTGCCTCTGGTCATGCCTTTTGCCTT  839

seq1  GCAGGGTCCCCTTATTTGATAGCACAGTCAGAACTACAATCTCCTGAAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTCCCCTTATTTGATAGCACAGTCAGAACTACAATCTCCTGAAGT  889

seq1  TTTCAAGGAAATAGAGACAGATGTTCTGAAAGCCCCAGAAATGAGAGGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGAAATAGAGACAGATGTTCTGAAAGCCCCAGAAATGAGAGGGC  939

seq1  CCTCTGTGGTCCCAAAGAGTGACCCTGGCCCAACTCAGAACAGAACTGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGGTCCCAAAGAGTGACCCTGGCCCAACTCAGAACAGAACTGGT  989

seq1  CTCCTAGCTTGCCTTTCTCCCATCTCCCAAGGCTATCAGTTTGAAGCAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGCTTGCCTTTCTCCCATCTCCCAAGGCTATCAGTTTGAAGCAAA  1039

seq1  GCTGAGCAAAACACCACTGTTCATGGGACAAAGCTTTCTAACTGGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCAAAACACCACTGTTCATGGGACAAAGCTTTCTAACTGGAATTC  1089