BAC Information

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BAC

Clone NameB6Ng01-093N20
Chromosome9 (Build37)
Map Location 112,429,675 - 112,588,159
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
Downstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093N20.bB6Ng01-093N20.g
ACCDH905233DH905234
length326618
definitionDH905233|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N20, 5' end.DH905234|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,587,834 - 112,588,159)(112,429,675 - 112,430,288)
sequence
aaattccaggtgtaccatatgtgttcacttaatgctacactattctccaa
atttcctatacttaatggactttactctctcacacattatcatgactgaa
aaaaaaaaacaaaaacaaacaaatcatgccatcctatgacaatcatagat
aatgctagataatgtcattgtgtgactctcagaagttacagttactatgc
agtggcccctcatacttcctttcaagctcaagagactttccttgctttgg
gtctcaattaaggtagtctatagttttgaagaacttaatattcttccata
aaggaagggagggaggggaggaggga
gaattcccctgtactggggcatatgatcttagcaagaccaagggcctctc
ctcccattgatggctgactaggccatctacattgtttcaaatttacccaa
gtgcaaacagcacttaggtagaaagctctgtgaaatgctggtgaactggg
aaatggtgaaccttgaggtttagcattgaataaaaagtttcaaactagaa
gtgttcacatgttttctcaggaatgtgcagatgtgattaatctttgtaga
agttctttggaggctatagtcaaggagagactgatgtctatagaaagaaa
gacagaaattaagaaacttgatcacaatagaagcttgtatcttttttttt
ttttttactctagaggattgagcctctctctccctcccctgccctctctc
tgtggtatgtttgggtgtgtatatgtgtgttgtgactgtatgcatgcatg
tgtgtagtgaatgtatacatgtgtgcatgtgatcagcttatgcttgtgtg
tgtgtgtctcaatgtaggtacacatgtgggaagtcagaggagagcaccag
gtgtttattacccagaggctctcttgctgctgcttttgcttataccagga
agtcgtctccgggaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_112587834_112588159
seq2: B6Ng01-093N20.b_55_380 (reverse)

seq1  TCCCTCCTCCCCTCCCTCCCTTCCTTTATGGAAGAATATTAAGTTCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTCCCCTCCCTCCCTTCCTTTATGGAAGAATATTAAGTTCTTCA  50

seq1  AAACTATAGACTACCTTAATTGAGACCCAAAGCAAGGAAAGTCTCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAGACTACCTTAATTGAGACCCAAAGCAAGGAAAGTCTCTTGAG  100

seq1  CTTGAAAGGAAGTATGAGGGGCCACTGCATAGTAACTGTAACTTCTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGGAAGTATGAGGGGCCACTGCATAGTAACTGTAACTTCTGAGA  150

seq1  GTCACACAATGACATTATCTAGCATTATCTATGATTGTCATAGGATGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACAATGACATTATCTAGCATTATCTATGATTGTCATAGGATGGCA  200

seq1  TGATTTGTTTGTTTTTGTTTTTTTTTTTCAGTCATGATAATGTGTGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGTTTGTTTTTGTTTTTTTTTTTCAGTCATGATAATGTGTGAGAG  250

seq1  AGTAAAGTCCATTAAGTATAGGAAATTTGGAGAATAGTGTAGCATTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTCCATTAAGTATAGGAAATTTGGAGAATAGTGTAGCATTAAGT  300

seq1  GAACACATATGGTACACCTGGAATTT  326
      ||||||||||||||||||||||||||
seq2  GAACACATATGGTACACCTGGAATTT  326

seq1: chr9_112429675_112430288
seq2: B6Ng01-093N20.g_69_686

seq1  GAATTCCCCTGTACTGGGGCATATGATCTTAGCAAGACCAAGGGCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGTACTGGGGCATATGATCTTAGCAAGACCAAGGGCCTCTC  50

seq1  CTCCCATTGATGGCTGACTAGGCCATCTACATTGTTTCAAATTTACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTGATGGCTGACTAGGCCATCTACATTGTTTCAAATTTACCCAA  100

seq1  GTGCAAACAGCACTTAGGTAGAAAGCTCTGTGAAATGCTGGTGAACTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAACAGCACTTAGGTAGAAAGCTCTGTGAAATGCTGGTGAACTGGG  150

seq1  AAATGGTGAACCTTGAGGTTTAGCATTGAATAAAAAGTTTCAAACTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGAACCTTGAGGTTTAGCATTGAATAAAAAGTTTCAAACTAGAA  200

seq1  GTGTTCACATGTTTTCTCAGGAATGTGCAGATGTGATTAATCTTTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACATGTTTTCTCAGGAATGTGCAGATGTGATTAATCTTTGTAGA  250

seq1  AGTTCTTTGGAGGCTATAGTCAAGGAGAGACTGATGTCTATAGAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGGAGGCTATAGTCAAGGAGAGACTGATGTCTATAGAAAGAAA  300

seq1  GACAGAAATTAAGAAACTTGATCACAATAGAAGCTTGTATCTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAATTAAGAAACTTGATCACAATAGAAGCTTGTATCTTTTTTTTT  350

seq1  TTTTTTACTCTAGAGGATTGAGCCTCTCTCTCCCTCCCCTGCCCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACTCTAGAGGATTGAGCCTCTCTCTCCCTCCCCTGCCCTCTCTC  400

seq1  TGTGGTATGTTTGGGTGTGTATATGTGTGTTGTGACTGTATGCATGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATGTTTGGGTGTGTATATGTGTGTTGTGACTGTATGCATGCATG  450

seq1  TGTGTAGTGAATGTATACATGTGTGCATGTGATCAGCTTATGCTTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTGAATGTATACATGTGTGCATGTGATCAGCTTATGCTTGTGTG  500

seq1  TGTGTGTCTCAATGTAGGTACACATGTGGGAAGTCAGAGGAGAGCACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTCAATGTAGGTACACATGTGGGAAGTCAGAGGAGAGCACCAG  550

seq1  GTG-TTATTA-CCAGAGGCTCTCTTGCTGCTGCTTTAGCTTATACCAGG-  597
      ||| |||||| ||||||||||||||||||||||||| |||||||||||| 
seq2  GTGTTTATTACCCAGAGGCTCTCTTGCTGCTGCTTTTGCTTATACCAGGA  600

seq1  AGTCGTC-CCGGGAATCT  614
      ||||||| ||||||||||
seq2  AGTCGTCTCCGGGAATCT  618