BAC Information

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BAC

Clone NameB6Ng01-094C07
Chromosome9 (Build37)
Map Location 119,139,905 - 119,372,021
singlet/doubletdoublet
Overlap gene9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13
Downstream geneScn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094C07.bB6Ng01-094C07.g
ACCDH905439DH905440
length1,2121,117
definitionDH905439|Mus musculus domesticus DNA, BAC clone: B6Ng01-094C07, 5' end.DH905440|Mus musculus domesticus DNA, BAC clone: B6Ng01-094C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,139,905 - 119,141,116)(119,370,872 - 119,372,021)
sequence
gaattcattaagcatagaatgtttaaaatttaaagggaacacatgagaca
atctttgaattctgactgacaggatgtcaactgctagccagaggcaggca
cagaggcacacctgggaagaagttgtacccactctgggcaagcagtaagg
caggtaaagagacatagaaggagacaggaagtaggacagaaagggaggga
atcaggcatatcaggggaagagggagaagaacagatgcaggcagctgggc
agataagggacacgctgagagatacaaacaagagaccatccaaagacaac
agccactcgggcagcagagcactcagagaaagttacagtggcattcagag
cccaaggttgggcacaggttggcctatgatgcccaatgggggagtggacc
aggatgactggcaaaggagaaaacagacataaaaacaagatacagagcag
caagtatcagaggcacagggtcagacagagtacctgacacaccacacaag
tgggcacacagacagcagaacatcctacctcattctttagggactgaggc
cggttctcaggatagtcccagcctgagtcacaggcctgtgtctcattgaa
gcggtggctcaggatgtcttccaggctggcactgtcaggaggtggccgga
acatgaggcaggactcgggtctgcccgctgtgtcgttggggatgcttata
gccagctgctcagcggcacttaggttgaaagtgtggttcttaacccagga
cactgaacagtggtgagcctcgtcaaggaccatgaagacctggccaaata
tgaagaatgcagtcaggaaattgggaatgcccatcaggatggtcaaccgc
acctgaaagcgaccaaagtcgcccacttcagccatgacctgtgcaaattg
agccatgtctgtttctcactcctgatctaggaacaccacacaggcttgct
gctctgggtctgctggcagctacattaatgtttaacccagctttaggcag
ctacacttatcagttaataccttacctccgtagtctgacaagaaaggata
ttcgaaacaacaacagcaaaaacccctaaaccaccttacgtgagaatgtt
attgactgtgaccagtatacaggcatccaaggaagaaacatctttttaag
gcaggccaagtcttcaaagaaatgaactgccctccctactgacttcaact
ataagatcttca
gaattccattatatcttgaaaataaacctgttggtcacaggtgctcagtg
cacaccgagacagacactaggactgcttttccagctgggcgtccttttgc
tccttagccttcagttcctccagctttttctcatagcgactcaggaagta
atcgtcaggttccacccctgagctcttcaaagcttccagaaccttctcca
gtctggccacagaccgggctccatcaatcttcctcgtgctcaggtacaga
gtgaattcctggaaacccaggagcttgcaggtgtccacagagcaaatatt
ccggatgtccctgcttctatccagacgggggaaaaacaccagacctgaca
tcttctccaggtcatggaggctcacctggaactcggataactgggactgg
aacccaatggctttatttggcaccacaaaggcccccagcgccagcggctc
cgtagattccgggcttctgcgagccaggatcaccttgtaaaggtgcgagg
ggacggccacgttgtcctcaccaatcacctaaaaacagaggagtccgatt
agcgcactgggctgtgccgacacttcccaggttttgctcccacacctctg
tagatgccatacaggaaacggcctgtgaaaggcctcagtgtagcattcaa
ccaactgccaaggaaaaggaaagacattcaaacaactcgtaagtactgac
cagttctaaccagtctttaaaatactgttacctctgtaagcggtggctcc
aggcttttaatcccaggaccctgggaggaaaaagcagtggatctctgagt
tcaaggccagcctggtctacagggtggccaggatagccagggctacacaa
agaaactccgtctcaaaagagcaaataacgacaaaaccataatgtacccc
aaaggtcagggtcacagtatgtccacagacggagactaaggggtgcacag
cagcactgaacttcagtggaagggactgtcatttcctctcatggctatca
gaactcctacgctcttaacatagagtcgaactgctgctcagcactccagc
tcttatgtaaacagccaaacgcccaagatacaacggaacgtctgagctgc
agccgaacagtagcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119139905_119141116
seq2: B6Ng01-094C07.b_48_1259

seq1  GAATTCATTAAGCATAGAATGTTTAAAATTTAAAGGGAACACATGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGCATAGAATGTTTAAAATTTAAAGGGAACACATGAGACA  50

seq1  ATCTTTGAATTCTGACTGACAGGATGTCAACTGCTAGCCAGAGGCAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGAATTCTGACTGACAGGATGTCAACTGCTAGCCAGAGGCAGGCA  100

seq1  CAGAGGCACACCTGGGAAGAAGTTGTACCCACTCTGGGCAAGCAGTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCACACCTGGGAAGAAGTTGTACCCACTCTGGGCAAGCAGTAAGG  150

seq1  CAGGTAAAGAGACATAGAAGGAGACAGGAAGTAGGACAGAAAGGGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAGAGACATAGAAGGAGACAGGAAGTAGGACAGAAAGGGAGGGA  200

seq1  ATCAGGCATATCAGGGGAAGAGGGAGAAGAACAGATGCAGGCAGCTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCATATCAGGGGAAGAGGGAGAAGAACAGATGCAGGCAGCTGGGC  250

seq1  AGATAAGGGACACGCTGAGAGATACAAACAAGAGACCATCCAAAGACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGGACACGCTGAGAGATACAAACAAGAGACCATCCAAAGACAAC  300

seq1  AGCCACTCGGGCAGCAGAGCACTCAGAGAAAGTTACAGTGGCATTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTCGGGCAGCAGAGCACTCAGAGAAAGTTACAGTGGCATTCAGAG  350

seq1  CCCAAGGTTGGGCACAGGTTGGCCTATGATGCCCAATGGGGGAGTGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGTTGGGCACAGGTTGGCCTATGATGCCCAATGGGGGAGTGGACC  400

seq1  AGGATGACTGGCAAAGGAGAAAACAGACATAAAAACAAGATACAGAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACTGGCAAAGGAGAAAACAGACATAAAAACAAGATACAGAGCAG  450

seq1  CAAGTATCAGAGGCACAGGGTCAGACAGAGTACCTGACACACCACACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATCAGAGGCACAGGGTCAGACAGAGTACCTGACACACCACACAAG  500

seq1  TGGGCACACAGACAGCAGAACATCCTACCTCATTCTTTAGGGACTGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACACAGACAGCAGAACATCCTACCTCATTCTTTAGGGACTGAGGC  550

seq1  CGGTTCTCAGGATAGTCCCAGCCTGAGTCACAGGCCTGTGTCTCATTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCTCAGGATAGTCCCAGCCTGAGTCACAGGCCTGTGTCTCATTGAA  600

seq1  GCGGTGGCTCAGGATGTCTTCCAGGCTGGCACTGTCAGGAGGTGGCCGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGGCTCAGGATGTCTTCCAGGCTGGCACTGTCAGGAGGTGGCCGGA  650

seq1  ACATGAGGCAGGACTCGGGTCTGCCCGCTGTGTCGTTGGGGATGCTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGCAGGACTCGGGTCTGCCCGCTGTGTCGTTGGGGATGCTTATA  700

seq1  GCCAGCTGCTCAGCGGCACTTAGGTTGAAAGTGTGGTTCTTAACCCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGCTCAGCGGCACTTAGGTTGAAAGTGTGGTTCTTAACCCAGGA  750

seq1  CACTGAACAGTGGTGAGCCTCGTCAAGGACCATGAAGACCTGGCCAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACAGTGGTGAGCCTCGTCAAGGACCATGAAGACCTGGCCAAATA  800

seq1  TGAAGAATGCAGTCAGGAAATTGGGAATGCCCATCAGGATGGTCAACCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATGCAGTCAGGAAATTGGGAATGCCCATCAGGATGGTCAACCGC  850

seq1  ACCTGAAAGCGACCAAAGTCGCCCACTTCAGCCATGACCTGTGCAAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAGCGACCAAAGTCGCCCACTTCAGCCATGACCTGTGCAAATTG  900

seq1  AGCCATGTCTGTTTCTCACTCCTGAGTCTAGGAACACCACACAGGCTTGC  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCCATGTCTGTTTCTCACTCCTGA-TCTAGGAACACCACACAGGCTTGC  949

seq1  TGCTCTGGGTCCTGCTGGCAGCTACATTAATGTTTAACCCAGCTTTAGGC  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGGT-CTGCTGGCAGCTACATTAATGTTTAACCCAGCTTTAGGC  998

seq1  AGCTACACTTATCAGTTTATACCTTACCTCCGTAGTCTGACAAGAAAGAA  1050
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  AGCTACACTTATCAGTTAATACCTTACCTCCGTAGTCTGACAAGAAAGGA  1048

seq1  TA-TCGAAACAACAACAGCAAAAACCCCCAAACCACACTTACGTGAGAAT  1099
      || ||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  TATTCGAAACAACAACAGCAAAAACCCCTAAACCAC-CTTACGTGAGAAT  1097

seq1  GTTATTGACTGTGA-CAG-ATACAGGCATCACAAGAAG-AACATCTTTCT  1146
      |||||||||||||| ||| |||||||||||  | |||| ||||||||| |
seq2  GTTATTGACTGTGACCAGTATACAGGCATCCAAGGAAGAAACATCTTTTT  1147

seq1  -AGGCAGGCCAAAGTCTTCAAA-AGATGAAACTGCCTTCCTCACTGACTT  1194
       ||||||||| ||||||||||| | ||| ||||||| |||  ||||||||
seq2  AAGGCAGGCC-AAGTCTTCAAAGAAATG-AACTGCCCTCCCTACTGACTT  1195

seq1  CCAACTATAACATCTTCA  1212
       ||||||||| |||||||
seq2  -CAACTATAAGATCTTCA  1212

seq1: chr9_119370872_119372021
seq2: B6Ng01-094C07.g_67_1183 (reverse)

seq1  GTTGCTACTGTGTCTGGCTGCAGCTTCAAGGGCTGTCTGTTGTTTCTTGG  50
      ||||||||||| || ||||||||| |||  | |  || ||||| |||| |
seq2  GTTGCTACTGT-TC-GGCTGCAGC-TCA--GACGTTCCGTTGTATCTT-G  44

seq1  GGCGTTTGGGCTGTTTTTACTGTAAGAGCTGGGAGTGCTGAAGCCAGCAG  100
      ||||||| ||||||||  |   |||||||| ||||||||||   ||||||
seq2  GGCGTTT-GGCTGTTTACA---TAAGAGCT-GGAGTGCTGA--GCAGCAG  87

seq1  TTCTGACTTCTATGTTTAGAGCGTTAGGAGTTCTGATTAGCCAATGAGGA  150
      ||| ||| |||||||| |||||| |||||||||||| ||||| |||| ||
seq2  TTC-GAC-TCTATGTTAAGAGCG-TAGGAGTTCTGA-TAGCC-ATGA-GA  131

seq1  GGAAATGACAGTCCCCTTTCCCACTGGAAGTTCAGTGCTTGCTTGTGGCA  200
      |||||||||||||||   | ||||| |||||||||||| ||| ||| |||
seq2  GGAAATGACAGTCCC---TTCCACT-GAAGTTCAGTGC-TGC-TGT-GCA  174

seq1  CCCCTTTGTCCTCCGTCCTGTGGACATACTGTGACCCCTGCCCTTTGGGG  250
      |||||| || |||||| ||||||||||||||||| ||||| |||||||||
seq2  CCCCTTAGT-CTCCGT-CTGTGGACATACTGTGA-CCCTGACCTTTGGGG  221

seq1  TAACATTATGGTTTTTTGTCGTTATTTTGCTCCTTTTGAGACGGAGTTTC  300
      | |||||||||  ||||||||||| |||||| ||||||||||||||||||
seq2  T-ACATTATGG--TTTTGTCGTTA-TTTGCT-CTTTTGAGACGGAGTTTC  266

seq1  TTTGTGTAGCCCTGGCTATCCTGGCCACCCTGTAGACCAGGCTGGCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTAGCCCTGGCTATCCTGGCCACCCTGTAGACCAGGCTGGCCTTG  316

seq1  AACTCAGAGATCCACCTGCTTTTTCCT-CCAGGGTCCTGGGATT-AAAGC  398
      |||||||||||||| |||||||||||| |||||||||||||||| |||||
seq2  AACTCAGAGATCCA-CTGCTTTTTCCTCCCAGGGTCCTGGGATTAAAAGC  365

seq1  CTGGAGCCACCGCTTACAGAGGTAACAGTATTTTAAAGACTGGTTAGAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCACCGCTTACAGAGGTAACAGTATTTTAAAGACTGGTTAGAAC  415

seq1  TGGTCAGTACTTACGAGTTGTTTGAATGTCTTTCCTTTTCCTTGGCAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTACTTACGAGTTGTTTGAATGTCTTTCCTTTTCCTTGGCAGTT  465

seq1  GGTTGAATGCTACACTGAGGCCTTTCACAGGCCGTTTCCTGTATGGCATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAATGCTACACTGAGGCCTTTCACAGGCCGTTTCCTGTATGGCATC  515

seq1  TACAGAGGTGTGGGAGCAAAACCTGGGAAGTGTCGGCACAGCCCAGTGCG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGTGTGGGAGCAAAACCTGGGAAGTGTCGGCACAGCCCAGTGCG  565

seq1  CTAATCGGACTCCTCTGTTTTTAGGTGATTGGTGAGGACAACGTGGCCGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCGGACTCCTCTGTTTTTAGGTGATTGGTGAGGACAACGTGGCCGT  615

seq1  CCCCTCGCACCTTTACAAGGTGATCCTGGCTCGCAGAAGCCCGGAATCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCGCACCTTTACAAGGTGATCCTGGCTCGCAGAAGCCCGGAATCTA  665

seq1  CGGAGCCGCTGGCGCTGGGGGCCTTTGTGGTGCCAAATAAAGCCATTGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCCGCTGGCGCTGGGGGCCTTTGTGGTGCCAAATAAAGCCATTGGG  715

seq1  TTCCAGTCCCAGTTATCCGAGTTCCAGGTGAGCCTCCATGACCTGGAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCCCAGTTATCCGAGTTCCAGGTGAGCCTCCATGACCTGGAGAA  765

seq1  GATGTCAGGTCTGGTGTTTTTCCCCCGTCTGGATAGAAGCAGGGACATCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGGTCTGGTGTTTTTCCCCCGTCTGGATAGAAGCAGGGACATCC  815

seq1  GGAATATTTGCTCTGTGGACACCTGCAAGCTCCTGGGTTTCCAGGAATTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTTGCTCTGTGGACACCTGCAAGCTCCTGGGTTTCCAGGAATTC  865

seq1  ACTCTGTACCTGAGCACGAGGAAGATTGATGGAGCCCGGTCTGTGGCCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTACCTGAGCACGAGGAAGATTGATGGAGCCCGGTCTGTGGCCAG  915

seq1  ACTGGAGAAGGTTCTGGAAGCTTTGAAGAGCTCAGGGGTGGAACCTGACG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAAGGTTCTGGAAGCTTTGAAGAGCTCAGGGGTGGAACCTGACG  965

seq1  ATTACTTCCTGAGTCGCTATGAGAAAAAGCTGGAGGAACTGAAGGCTAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCCTGAGTCGCTATGAGAAAAAGCTGGAGGAACTGAAGGCTAAG  1015

seq1  GAGCAAAAGGACGCCCAGCTGGAAAAGCAGTCCTAGTGTCTGTCTCGGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAAGGACGCCCAGCTGGAAAAGCAGTCCTAGTGTCTGTCTCGGTG  1065

seq1  TGCACTGAGCACCTGTGACCAACAGGTTTATTTTCAAGAAATGATGGAAT  1148
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  TGCACTGAGCACCTGTGACCAACAGGTTTATTTTCAAGATATAATGGAAT  1115

seq1  TC  1150
      ||
seq2  TC  1117