BAC Information

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BAC

Clone NameB6Ng01-094G21
Chromosome9 (Build37)
Map Location 53,739,490 - 53,740,390
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996
Downstream geneElmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094G21.bB6Ng01-094G21.g
ACCDH905655DH905656
length1,234956
definitionDH905655|Mus musculus domesticus DNA, BAC clone: B6Ng01-094G21, 5' end.DH905656|Mus musculus domesticus DNA, BAC clone: B6Ng01-094G21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaattcatatgcttctgttaaaaatcaaagtgatatggtttct
gtctaatcaggaatttgttgcaacttcctttcatattggacttcataaga
gatattttttctacttctatcatgtttaatgttccaaatagatttttaaa
actggttgagtgcattttagttttagcttcagaagatatcatgtatattt
aagagacatttaactattataaattattttgatgacttaaaataaataaa
taaaaaatcaaagccatatgcaattcttttagttttattcaattttccca
aacctatcaatataattactgacttacactatgcaaagaggttatatgac
atatagaaactgttgaactttttaagaattaatatcattatttatacaac
ttcaacatttaattcagaacagaaattgtccattgtacatcatccatatt
caatctcgtatgggattgtctggtccattggcagaaggaaatgatgagac
tgactaattactcataggaactgtgctagaagtctcagaatttcattaaa
aaaacaccatgttaacaacaaaagtttaaagagaaagttttccattactt
ggcaataagccaaaaaaattgaaaaaaaaaaagagacttactagttcttt
gtataatcaagtattattacctgaaagcaacaataaaggcaacaaaagaa
atgaaatctggcaaaaataatgtgcttcactttgcagactctggaaaact
aaaatttgtacatcatacattgatacatattcaggatttcaatgcgattc
tgctttaagttctgaaaaggctgattctgtaactgcacatttgttggaag
tgatgactatcatggagataccctttcaaattaagactggtaatgcctct
gcatatatttccattaaaattaaaggtttttttcatgtataacataaaat
atattacagggtataccataacaaccctacaattcaggcagttatagaaa
gaatctaattgtacctttaaaggagaatgccttaataaatagaaagatgg
ataagaacctccataaaaataataaggctttataacctttaattttgaat
gctaatgagaacagactagagctgtggaaagactggatttaggaaaattc
gatgagttaactcacctttaataccttagcttactctgttcacttagaca
tactcgattgattacgacaaagtgtgtcctgtta
gaattcaaagggtaagcaaatatatccccctcctcgaagggaagagatac
aaagtcaagttgccagggtggagtgtagagagtggagtagaagtggagat
acagtggcatggaagctagtcagttaaggtcagaaaccacagggttctca
ccttctgaatgccaggtttggactttatcccataagaatgaggaatactt
gaaatcatgacataagtttgggttttaaaaagatctttctctgatagtag
catcataaaaagtttggaaggagcaaggaaaggaactttaccttcaagca
agggaagcttgaaggtaaagttcatttggggaagttactgtgacagtctg
tgaattggggtttgagcagaacctatgataatttattccatctagttagc
caagtatggttgtttggatgagaatggtccctgcaaactcttacgtttga
atccttagtcaccagggagtggaactgtttgagaaggattgggaggtgtg
gccttggtggaggaaggtttactatgcaatacttataaatcaatttcttt
ctcagctatcatcagagaagcttcctcctgcagcagatgggagcaaatac
agagaccacggatggacaatgtgtagagagtgtgagaccttggatacttc
agtcctaaatgggatgtcttcatcaaaccctcccctcgaggctcagggaa
ccctgtagaagaaggtagacagattgtaagagtcagagaaaatgtaggac
acccagggaaacaaggccctctagacacaacagggcaggtgcacatatga
aactcacagagactgcagcagcctacacaaggtctgcacaggtctaagcc
agatggaactccagcatgacaggagaaatggacacagcccccatccctca
cccagaagctatcttcatctataactgccacaaaggaaaaactagttttt
ctccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_53739490_53740390
seq2: B6Ng01-094G21.g_69_970

seq1  GAATTCAAAGGGTAAGCAAATATATCCCCCTCCTCGAAGGGAAGAGATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGTAAGCAAATATATCCCCCTCCTCGAAGGGAAGAGATAC  50

seq1  AAAGTCAAGTTGCCAGGGTGGAGTGTAGAGAGTGGAGTAGAAGTGGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGTTGCCAGGGTGGAGTGTAGAGAGTGGAGTAGAAGTGGAGAT  100

seq1  ACAGTGGCATGGAAGCTAGTCAGTTAAGGTCAGAAACCACAGGGTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCATGGAAGCTAGTCAGTTAAGGTCAGAAACCACAGGGTTCTCA  150

seq1  CCTTCTGAATGCCAGGTTTGGACTTTATCCCATAAGAATGAGGAATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAATGCCAGGTTTGGACTTTATCCCATAAGAATGAGGAATACTT  200

seq1  GAAATCATGACATAAGTTTGGGTTTTAAAAAGATCTTTCTCTGATAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGACATAAGTTTGGGTTTTAAAAAGATCTTTCTCTGATAGTAG  250

seq1  CATCATAAAAAGTTTGGAAGGAGCAAGGAAAGGAACTTTACCTTCAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAAAAGTTTGGAAGGAGCAAGGAAAGGAACTTTACCTTCAAGCA  300

seq1  AGGGAAGCTTGAAGGTAAAGTTCATTTGGGGAAGTTACTGTGACAGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCTTGAAGGTAAAGTTCATTTGGGGAAGTTACTGTGACAGTCTG  350

seq1  TGAATTGGGGTTTGAGCAGAACCTATGATAATTTATTCCATCTAGTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGGGGTTTGAGCAGAACCTATGATAATTTATTCCATCTAGTTAGC  400

seq1  CAAGTATGGTTGTTTGGATGAGAATGGTCCCTGCAAACTCTTACGTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGGTTGTTTGGATGAGAATGGTCCCTGCAAACTCTTACGTTTGA  450

seq1  ATCCTTAGTCACCAGGGAGTGGAACTGTTTGAGAAGGATTGGGAGGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGTCACCAGGGAGTGGAACTGTTTGAGAAGGATTGGGAGGTGTG  500

seq1  GCCTTGGTGGAGGAAGGTTTACTATGCAATACTTATAAATCAATTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTGGAGGAAGGTTTACTATGCAATACTTATAAATCAATTTCTTT  550

seq1  CTCAGCTATCATCAGAGAAGCTTCCTCCTGCAGCAGATGGGAGCAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTATCATCAGAGAAGCTTCCTCCTGCAGCAGATGGGAGCAAATAC  600

seq1  AGAGACCACGGATGGACAATGTGTAGAGAGTGTGAGACCTTGGATACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCACGGATGGACAATGTGTAGAGAGTGTGAGACCTTGGATACTTC  650

seq1  AGTCCTAAATGGGATGTCTTCATCAAAACCCTCCCCTCGAGGCTCAGGGA  700
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTCCTAAATGGGATGTCTTCATC-AAACCCTCCCCTCGAGGCTCAGGGA  699

seq1  ACCCTGTAGAAGAAGGTAGACAGATTGTAAGAGTCAGAGAAAATGTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTAGAAGAAGGTAGACAGATTGTAAGAGTCAGAGAAAATGTAGGA  749

seq1  CA-CCAAGGAAACAAGGCCCTCTAGACACAACAGGGCAGGTGCACATATG  799
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGGAAACAAGGCCCTCTAGACACAACAGGGCAGGTGCACATATG  799

seq1  -AACTCACAGAGACTGCAGCAGCCTACAC-AGGTCTGCACAGGTCTAAGC  847
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAACTCACAGAGACTGCAGCAGCCTACACAAGGTCTGCACAGGTCTAAGC  849

seq1  CAGATGGAACTCCAGCATTGACAGGAGAAATGGACACAGCCCCCATCCCT  897
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGATGGAACTCCAGCA-TGACAGGAGAAATGGACACAGCCCCCATCCCT  898

seq1  CACC  901
      ||||
seq2  CACC  902