BAC Information

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BAC

Clone NameB6Ng01-095K12
Chromosome9 (Build37)
Map Location 119,923,768 - 120,002,028
singlet/doubletdoublet
Overlap geneCmya1, Cx3cr1, Ccr8
Upstream geneCtdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1
Downstream geneSlc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095K12.bB6Ng01-095K12.g
ACCDH906534DH906535
length1,1471,113
definitionDH906534|Mus musculus domesticus DNA, BAC clone: B6Ng01-095K12, 5' end.DH906535|Mus musculus domesticus DNA, BAC clone: B6Ng01-095K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,000,856 - 120,002,028)(119,923,768 - 119,924,887)
sequence
gaattcagtcgtgtcaaacactggggctgaggggatatctccgtaagcga
ggtgcttgctaagcaaccatggagacctcagttcaaacccctaaacccat
gcgtggcagtgtgtgctcgcaatgcccacgcaggggaggcagagacaggc
agagctccgtggccctggccagcctggcctgcttggtgagcacaaagcga
ggggagagcgcctgaaacatagcaccaaggctggcctctgacctcctgta
catgcgcacactcacatattctcacacacacacacacacacacacacaca
cacacaccacgaaataaaacattacagggcctgggggcacagcacatgct
taggacccgagccaggtcctaggtcccgttccccacaccccacacaatgc
agagtctaagactccattgacagacatacaaggaggtgggattgaatgga
agttttctgtggagaaaggatgatcgccagaaaatgctgtcttgtctaat
ttttttactcctgtgagagctttcagccctttctgtgtcctggagaacaa
gggacatgctcctatcagccaccaagagacacacgcgcttgtgggctcag
gctttggagacactcaaaactcttatgatcccgaaatatcagccttctcc
tgatctctctgtaaggagatgaaaacggtgcccgcactgcctctgagccc
taaccccaaggatgattcttaccaattatctgagcgagcctttcttctga
ggtttcagagctgcccactcctctgccacatgtctgcttgctgtgctgac
tcctcctcctgagcacttcagctatatgccatgcctcagccaatccaaag
ttggaacagtaagagctacctctgacttacagccccaacccctctgctgt
ttgggacagacccaccctgtctccagagcaatggaacagcgtgctttgca
accaggctccttgactctcagtaccttctcctgttcttttcactcagatc
tggggcagagatagcaggggcatcacctttctctgatgtgtatgggaggg
atctgtcatctactcttagtctgttggtggtttgcttgtggtggttgtgt
caaacaggttctctgcgacatggctgtcctgaaactcattctgtaga
gaattccagaacattctttggctgccctgtgagcacagcgccctcgatgc
acatctcctttgtcccagcctgatcctggatatctctctggtagagcagg
gcttgacctatgtcctgacctaggtgtgtatttttccctgagatataatg
gcttccctgagggctagaagcttccggaagcttctttgtagctgattgga
ctgagatgaaagttggagaggaggatcctgtgcagggaggagagacttgt
aggaggccaggctcggctcctctcagtgtctccagcctcctggagggcag
gacgttcactgctgcctggcctctggcctctgcgtgatttctcatcttgt
cctcaggatggctctcggccttttcttgggttttgacgaggggtggatct
ctgacctggctggagcttgtctgtatggctctgctactgactgagacctt
gttcacactgggatcttttgtagttccctgtggatggctgcttgtgggag
cctcagactggaggctagacatggagctaagagccttgtgcactgcttct
tcgatgtccagcagcctggctagggtctgttctttcagctgggcaacctc
tgtactcacccgagtcagttccccaaaggcctgctccatggaggcctcag
tcatgtggggggcagtgggagcctgagggactccccctcccagctggggt
acgccctcgaagagcttccgcagggcctgcacatccacgctgcgagatgc
ttccttctccagggtttgcacttggctcaggaggccctggagctcctgat
ggctgccctgtggactctcaggggtcccctgcttttgggggggagctatt
gtgcttttgtggtgggctggagtcattgttgagaacgttcaacttagaga
ctcggggctctggctgttgctgctggttatctgaccctgctaggcctgga
agccatagagctgagtggacgctgatgaggcaggttgcttctggcctttg
agctttcagcagaggcaggcagtcttggctgctatgtgggagctttgtct
gaccttgggttggctttacctgactcactggcctatgacttgttctgctt
ctgaggcttggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_120000856_120002028
seq2: B6Ng01-095K12.b_48_1194 (reverse)

seq1  TCTACAGAATGAGTTCTAAGACAGCCACTGTTCTGCAGAGAAACCCTGTT  50
      |||||||||||||||  | |||||||| |||   ||||||||  ||||||
seq2  TCTACAGAATGAGTTTCAGGACAGCCA-TGT--CGCAGAGAA--CCTGTT  45

seq1  TTGAACAACAAAACAAACAAACAAGCAAACAAACAAACAGGAACTAAGAG  100
      |      ||| ||| | |  ||||||||||  || |||||  ||||||||
seq2  T-----GACACAACCACC--ACAAGCAAAC-CACCAACAG--ACTAAGAG  85

seq1  TAGATGGACAGATTCCCTCCCATACCACCATCCAGAGGAAAGGTGATGCC  150
      ||||| |||||| ||||||||||||   ||| |||| ||||||||||| |
seq2  TAGAT-GACAGA-TCCCTCCCATAC--ACAT-CAGA-GAAAGGTGATG-C  128

seq1  CCCTGCTTATCTCTGCCCCAGATCTGAGGTGAAAAG-ACAGGAAGAAGGT  199
      |||||| |||||||||||||||||||| |||||||| ||||| |||||||
seq2  CCCTGC-TATCTCTGCCCCAGATCTGA-GTGAAAAGAACAGG-AGAAGGT  175

seq1  ACTGAGAGTCAAGGAGCCCTGGTTGCATAGCACGCTGTTCCATTGCTCTG  249
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  ACTGAGAGTCAAGGAG-CCTGGTTGCAAAGCACGCTGTTCCATTGCTCTG  224

seq1  GAGACAGGGTGGGTCTGTCCCAAACAGCAGAGGGGTTGGGGCTGTAAGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTGGGTCTGTCCCAAACAGCAGAGGGGTTGGGGCTGTAAGTC  274

seq1  AGAGGTAGCTCTTACTGTTCCAACCTTTGGATTGGCTGAGGCATGGCATA  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAGGTAGCTCTTACTGTTCCAA-CTTTGGATTGGCTGAGGCATGGCATA  323

seq1  TAGCTGAAGTGCTCAGGAGGAGGAGTCAGCACAGCAAGCAGACATGTGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAGTGCTCAGGAGGAGGAGTCAGCACAGCAAGCAGACATGTGGC  373

seq1  AGAGGAGTGGGCAGCTCTGAAACCTCAGAAGAAAGGCTCGCTCAGATAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTGGGCAGCTCTGAAACCTCAGAAGAAAGGCTCGCTCAGATAAT  423

seq1  TGGTAAGAATCATCCTTGGGGTTAGGGCTCAGAGGCAGTGCGGGCACCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGAATCATCCTTGGGGTTAGGGCTCAGAGGCAGTGCGGGCACCGT  473

seq1  TTTCATCTCCTTACAGAGAGATCAGGAGAAGGCTGATATTTCGGGATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCCTTACAGAGAGATCAGGAGAAGGCTGATATTTCGGGATCAT  523

seq1  AAGAGTTTTGAGTGTCTCCAAAGCCTGAGCCCACAAGCGCGTGTGTCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTTGAGTGTCTCCAAAGCCTGAGCCCACAAGCGCGTGTGTCTCT  573

seq1  TGGTGGCTGATAGGAGCATGTCCCTTGTTCTCCAGGACACAGAAAGGGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTGATAGGAGCATGTCCCTTGTTCTCCAGGACACAGAAAGGGCT  623

seq1  GAAAGCTCTCACAGGAGTAAAAAAATTAGACAAGACAGCATTTTCTGGCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCTCACAGGAGTAAAAAAATTAGACAAGACAGCATTTTCTGGCG  673

seq1  ATCATCCTTTCTCCACAGAAAACTTCCATTCAATCCCACCTCCTTGTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTTTCTCCACAGAAAACTTCCATTCAATCCCACCTCCTTGTATG  723

seq1  TCTGTCAATGGAGTCTTAGACTCTGCATTGTGTGGGGTGTGGGGAACGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAATGGAGTCTTAGACTCTGCATTGTGTGGGGTGTGGGGAACGGG  773

seq1  ACCTAGGACCTGGCTCGGGTCCTAAGCATGTGCTGTGCCCCCAGGCCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGACCTGGCTCGGGTCCTAAGCATGTGCTGTGCCCCCAGGCCCTG  823

seq1  TAATGTTTTATTTCGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTATTTCGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  873

seq1  TGAGAATATGTGAGTGTGCGCATGTACAGGAGGTCAGAGGCCAGCCTTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATATGTGAGTGTGCGCATGTACAGGAGGTCAGAGGCCAGCCTTGG  923

seq1  TGCTATGTTTCAGGCGCTCTCCCCTCGCTTTGTGCTCACCAAGCAGGCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGTTTCAGGCGCTCTCCCCTCGCTTTGTGCTCACCAAGCAGGCCA  973

seq1  GGCTGGCCAGGGCCACGGAGCTCTGCCTGTCTCTGCCTCCCCTGCGTGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCAGGGCCACGGAGCTCTGCCTGTCTCTGCCTCCCCTGCGTGGG  1023

seq1  CATTGCGAGCACACACTGCCACGCATGGGTTTAGGGGTTTGAACTGAGGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCGAGCACACACTGCCACGCATGGGTTTAGGGGTTTGAACTGAGGT  1073

seq1  CTCCATGGTTGCTTAGCAAGCACCTCGCTTACGGAGATATCCCCTCAGCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGTTGCTTAGCAAGCACCTCGCTTACGGAGATATCCCCTCAGCC  1123

seq1  CCAGTGTTTGACACGACTGAATTC  1173
      ||||||||||||||||||||||||
seq2  CCAGTGTTTGACACGACTGAATTC  1147

seq1: chr9_119923768_119924887
seq2: B6Ng01-095K12.g_68_1180

seq1  GAATTCCAGAACATTCTTTGGCTGCCCTGTGAGCACAGCGCCCTCGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACATTCTTTGGCTGCCCTGTGAGCACAGCGCCCTCGATGC  50

seq1  ACATCTCCTTTGTCCCAGCCTGATCCTGGATATCTCTCTGGTAGAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCCTTTGTCCCAGCCTGATCCTGGATATCTCTCTGGTAGAGCAGG  100

seq1  GCTTGACCTATGTCCTGACCTAGGTGTGTATTTTTCCCTGAGATATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACCTATGTCCTGACCTAGGTGTGTATTTTTCCCTGAGATATAATG  150

seq1  GCTTCCCTGAGGGCTAGAAGCTTCCGGAAGCTTCTTTGTAGCTGATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTGAGGGCTAGAAGCTTCCGGAAGCTTCTTTGTAGCTGATTGGA  200

seq1  CTGAGATGAAAGTTGGAGAGGAGGATCCTGTGCAGGGAGGAGAGACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGAAAGTTGGAGAGGAGGATCCTGTGCAGGGAGGAGAGACTTGT  250

seq1  AGGAGGCCAGGCTCGGCTCCTCTCAGTGTCTCCAGCCTCCTGGAGGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCAGGCTCGGCTCCTCTCAGTGTCTCCAGCCTCCTGGAGGGCAG  300

seq1  GACGTTCACTGCTGCCTGGCCTCTGGCCTCTGCGTGATTTCTCATCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTCACTGCTGCCTGGCCTCTGGCCTCTGCGTGATTTCTCATCTTGT  350

seq1  CCTCAGGATGGCTCTCGGCCTTTTCTTGGGTTTTGACGAGGGGTGGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGATGGCTCTCGGCCTTTTCTTGGGTTTTGACGAGGGGTGGATCT  400

seq1  CTGACCTGGCTGGAGCTTGTCTGTATGGCTCTGCTACTGACTGAGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGGCTGGAGCTTGTCTGTATGGCTCTGCTACTGACTGAGACCTT  450

seq1  GTTCACACTGGGATCTTTTGTAGTTCCCTGTGGATGGCTGCTTGTGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACACTGGGATCTTTTGTAGTTCCCTGTGGATGGCTGCTTGTGGGAG  500

seq1  CCTCAGACTGGAGGCTAGACATGGAGCTAAGAGCCTTGTGCACTGCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACTGGAGGCTAGACATGGAGCTAAGAGCCTTGTGCACTGCTTCT  550

seq1  TCGATGTCCAGCAGCCTGGCTAGGGTCTGTTCTTTCAGCTGGGCAACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGTCCAGCAGCCTGGCTAGGGTCTGTTCTTTCAGCTGGGCAACCTC  600

seq1  TGTACTCACCCGAGTCAGTTCCCCAAAGGCCTGCTCCATGGAGGCCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCACCCGAGTCAGTTCCCCAAAGGCCTGCTCCATGGAGGCCTCAG  650

seq1  TCATGTGGGGGGCAGTGGGAGCCTGAGGGACTCCCCCTCCCAGCTGGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGGGGGCAGTGGGAGCCTGAGGGACTCCCCCTCCCAGCTGGGGT  700

seq1  ACGCCCTCGAAGAGCTTCCGCAGGGCCTGCACATCCACGCTGCGAGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTCGAAGAGCTTCCGCAGGGCCTGCACATCCACGCTGCGAGATGC  750

seq1  TTCCTTCTCCAGGGTTTGCACTTGGCTCAGGAGGCCCTGGAGCTCCTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCCAGGGTTTGCACTTGGCTCAGGAGGCCCTGGAGCTCCTGAT  800

seq1  GGCTGCCCTGTGGACTCTCAGGGGTCCCCTGCTTTT-GGGGGGAGCTATT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCTGCCCTGTGGACTCTCAGGGGTCCCCTGCTTTTGGGGGGGAGCTATT  850

seq1  GTGCTTTTGTGGTGGGCTGGAGTCATTGTTGAGAACGTTCAACTTAGGAG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGCTTTTGTGGTGGGCTGGAGTCATTGTTGAGAACGTTCAACTTA-GAG  899

seq1  ACTCGGGGCTCTGGCTGTTGCTGCTGGTTATCTGACCCCTGCTAGGCCTG  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTCGGGGCTCTGGCTGTTGCTGCTGGTTATCTGA-CCCTGCTAGGCCTG  948

seq1  GAAGCCATAGAGCTGAGTGGACGCTGATGA-GCAGGTTGCTTCTGGCCCT  998
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GAAGCCATAGAGCTGAGTGGACGCTGATGAGGCAGGTTGCTTCTGG-CCT  997

seq1  TGGAGCTTTCAGCCAGAGGCAGGCAGTCCTGGCCTGCTATTGTGGGAGCT  1048
      | |||||||||| ||||||||||||||| ||| |||||| ||||||||||
seq2  TTGAGCTTTCAG-CAGAGGCAGGCAGTCTTGG-CTGCTA-TGTGGGAGCT  1044

seq1  TTGTCTGACCCTGGGTTGGCTATACCTGGCTCACCTGGCTTATGGTCTTG  1098
      |||||||||| |||||||||| |||||| |||| ||||| ||| | ||||
seq2  TTGTCTGACCTTGGGTTGGCTTTACCTGACTCA-CTGGCCTAT-GACTTG  1092

seq1  TCCTGCTTCTGAGGCTCTGGCA  1120
      | |||||||||||||| |||||
seq2  TTCTGCTTCTGAGGCT-TGGCA  1113