BAC Information

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BAC

Clone NameB6Ng01-096H24
Chromosome9 (Build37)
Map Location 92,824,630 - 92,963,863
singlet/doubletdoublet
Overlap geneLOC100040114
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
Downstream geneLOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096H24.bB6Ng01-096H24.g
ACCDH907133DH907134
length1,1751,028
definitionDH907133|Mus musculus domesticus DNA, BAC clone: B6Ng01-096H24, 5' end.DH907134|Mus musculus domesticus DNA, BAC clone: B6Ng01-096H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,962,683 - 92,963,863)(92,824,630 - 92,825,649)
sequence
gaattcattgcatcctcctgccatagcatctcaagtgtgaacaaatatga
cataaggattggctttaaaagcacttgtaaaacaagtttgaaaaaccttt
cccttcttctttgatgcttttagaacagtgtgaaaagcactggcctcact
tactctttaaatactcaatagcatctgcctgtgcacccagctggctgtta
agggaacttgctaggactctactgattatagttcccatctcatctttatc
attttgctcttcgggttttctttttcttttcatgatttgttaacttctac
attatccactttgttcacatatctctttcatgagttattagagttaactt
gtatttctctattgtgatttgtctttcatttgccaatatattgatttatg
ttgggaaaggcttaatcaatttcaacttttcataaaactaactacaagta
gaaatgtctcaagtatttccactgaaatctttatcactagcttctacttc
atcacatggtttcttctgtctaacttcttgagatgtgaattgagatttct
ttagcctctcttgccattgatattattgctatgaagtcacatcttatagt
tgcttttgatatatttatttacaaagtcattttagacatacttgttttta
gtatttttgtcttcaaatgttataccaaaattaaaattgactaaagtact
ttgaacctgattatatattcaccttgacaactttatatttttaatgttaa
tactttgtacccattcattataaccaaataagaattcctgcagtcaattg
gagatgaacttaagattcattttggttgatgtctttatgttgctttcatt
cattaggcttattgtgcacagggcggttgtccagcagctgcttttctttc
aacacttggaagctgctgctctaagttctaagttagggttataagtcatg
gggatgttccttccctgtttgcattctttttttctgattccaaagaagtc
tcagctttcacttctgcatctctacagcaatgtgcctcttagtgagtctc
ggctggtgttcacttgtaattcttggcagttctgtagctaaatattgaaa
gtataacagggggaagtacaaattcatgtgctcttcaattccttctacag
cactacaggtactattggccacacc
gaattctttcagtggagattacaagattaaagacctaagagtgtgtggac
ccggatcccagggacagtggggtcaatggatggaagttttctgagcggtt
ataccagaagggaaactgaccttcccttcttgctccactgggattcttaa
taaaggcaagccaaggaaatgtggtacggctttgtaaatggtgaaagcag
gtgagactcattgtatgtagagaggtattaaatatagatatcagagactc
tggttggtatcatttaaacaggattatttttaaatttttacaatgcaaag
acagcctagcacagttgcaccctggtttagagtaagtactgtttcttttt
ctttacttgggagaatgagttcaggtgtgtgtgactaacccttgttggag
ggaagtgctttgtctacaagtaaaagaaatgttattcctggttgtttata
tgtgaatggcagagtgaaattttcagctttgaagtgtatatgtttttttt
ttctttttttacaaagaatcccaaactccttaaattcccctttattagat
aattcaaaacaaatagttcagtgaaaagaaggcaatagaatgtatttcgt
aagtagcagaagcagacaggactgtttcccctcccccaccaaaccatctg
tgaatacaagaattttttttctgatgaaaaaaataaaatgagaaaaataa
taatgcacaataattatttcatactaatccattttcaagtaaggactgcc
tgaagcaagaattgtgttcctttttagtgggctccctcttggatgggctc
tccctgtgatggtagctttcgctttttcttccccttcctttgccttttgt
tctgccttgaaaaggctcggaaatgagcataatggctgttttccttgggc
agtgagctgagagtgaaagctgggcttcctgtgaactaagcattttgatg
caaatttacccaaaaagaaaacagtgctgcagaaagctgctggactctac
taagtgcaaggggaaagcttgggctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92962683_92963863
seq2: B6Ng01-096H24.b_46_1220 (reverse)

seq1  GGTGTG--CAATAGTA-CTGTAGTGCTGTAGAAGGGGATTGAAGAAGCAC  47
      ||||||  |||||||| |||||||||||||||| || ||||||| |||||
seq2  GGTGTGGCCAATAGTACCTGTAGTGCTGTAGAA-GGAATTGAAG-AGCAC  48

seq1  ATGGAATTTGTACTTCTCCCCTGTAATACTTTCAGATTATTTAGCTAACA  97
      || ||||||||||||| ||||||| ||||||||  | ||||||||| |||
seq2  AT-GAATTTGTACTTC-CCCCTGTTATACTTTC--AATATTTAGCT-ACA  93

seq1  GAACTG-CAAGAATTACAAGTGAACACCAGCCCGAGGACTCACTAGAGGG  146
      |||||| ||||||||||||||||||||||| |||| |||||||||   ||
seq2  GAACTGCCAAGAATTACAAGTGAACACCAG-CCGA-GACTCACTAAGAGG  141

seq1  CACATTGCTGTAGAGATGGCAGAAGTGAAAGCCTGAGACTTCTTTGGAAT  196
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  CACATTGCTGTAGAGAT-GCAGAAGTGAAAG-CTGAGACTTCTTTGGAAT  189

seq1  CAG-AGAAAAGAATGCAAACAGGGAAGGAACATCCCCATGACTTATAACC  245
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAAGAATGCAAACAGGGAAGGAACATCCCCATGACTTATAACC  239

seq1  CTAACTTAGAACTTAGAGCAGCAGCTTCCAAGTGTTGAAAGAAAAGCAGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTAGAACTTAGAGCAGCAGCTTCCAAGTGTTGAAAGAAAAGCAGC  289

seq1  TGCTGGACAACCGCCCTGTGCACAATAAGCCTAATGAATGAAAGCAACAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACAACCGCCCTGTGCACAATAAGCCTAATGAATGAAAGCAACAT  339

seq1  AAAGACATCAACCAAAATGAATCTTAAGTTCATCTCCAATTGACTGCAGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATCAACCAAAATGAATCTTAAGTTCATCTCCAATTGACTGCAGG  389

seq1  AATTCTTATTTGGTTATAATGAATGGGTACAAAGTATTAACATTAAAAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTATTTGGTTATAATGAATGGGTACAAAGTATTAACATTAAAAAT  439

seq1  ATAAAGTTGTCAAGGTGAATATATAATCAGGTTCAAAGTACTTTAGTCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTGTCAAGGTGAATATATAATCAGGTTCAAAGTACTTTAGTCAA  489

seq1  TTTTAATTTTGGTATAACATTTGAAGACAAAAATACTAAAAACAAGTATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTGGTATAACATTTGAAGACAAAAATACTAAAAACAAGTATG  539

seq1  TCTAAAATGACTTTGTAAATAAATATATCAAAAGCAACTATAAGATGTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATGACTTTGTAAATAAATATATCAAAAGCAACTATAAGATGTGA  589

seq1  CTTCATAGCAATAATATCAATGGCAAGAGAGGCTAAAGAAATCTCAATTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGCAATAATATCAATGGCAAGAGAGGCTAAAGAAATCTCAATTC  639

seq1  ACATCTCAAGAAGTTAGACAGAAGAAACCATGTGATGAAGTAGAAGCTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAAGAAGTTAGACAGAAGAAACCATGTGATGAAGTAGAAGCTAG  689

seq1  TGATAAAGATTTCAGTGGAAATACTTGAGACATTTCTACTTGTAGTTAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGATTTCAGTGGAAATACTTGAGACATTTCTACTTGTAGTTAGT  739

seq1  TTTATGAAAAGTTGAAATTGATTAAGCCTTTCCCAACATAAATCAATATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAAAGTTGAAATTGATTAAGCCTTTCCCAACATAAATCAATATA  789

seq1  TTGGCAAATGAAAGACAAATCACAATAGAGAAATACAAGTTAACTCTAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAATGAAAGACAAATCACAATAGAGAAATACAAGTTAACTCTAAT  839

seq1  AACTCATGAAAGAGATATGTGAACAAAGTGGATAATGTAGAAGTTAACAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGAAAGAGATATGTGAACAAAGTGGATAATGTAGAAGTTAACAA  889

seq1  ATCATGAAAAGAAAAAGAAAACCCGAAGAGCAAAATGATAAAGATGAGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAAAAGAAAAAGAAAACCCGAAGAGCAAAATGATAAAGATGAGAT  939

seq1  GGGAACTATAATCAGTAGAGTCCTAGCAAGTTCCCTTAACAGCCAGCTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTATAATCAGTAGAGTCCTAGCAAGTTCCCTTAACAGCCAGCTGG  989

seq1  GTGCACAGGCAGATGCTATTGAGTATTTAAAGAGTAAGTGAGGCCAGTGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGGCAGATGCTATTGAGTATTTAAAGAGTAAGTGAGGCCAGTGC  1039

seq1  TTTTCACACTGTTCTAAAAGCATCAAAGAAGAAGGGAAAGGTTTTTCAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACACTGTTCTAAAAGCATCAAAGAAGAAGGGAAAGGTTTTTCAAA  1089

seq1  CTTGTTTTACAAGTGCTTTTAAAGCCAATCCTTATGTCATATTTGTTCAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTACAAGTGCTTTTAAAGCCAATCCTTATGTCATATTTGTTCAC  1139

seq1  ACTTGAGATGCTATGGCAGGAGGATGCAATGAATTC  1181
      ||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGATGCTATGGCAGGAGGATGCAATGAATTC  1175

seq1: chr9_92824630_92825649
seq2: B6Ng01-096H24.g_66_1093

seq1  GAATTCTTTCAGTGGAGATTACAAGATTAAAGACCTAAGAGTGTGTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTGGAGATTACAAGATTAAAGACCTAAGAGTGTGTGGAC  50

seq1  CCGGATCCCAGGGACAGTGGGGTCAATGGATGGAAGTTTTCTGAGCGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATCCCAGGGACAGTGGGGTCAATGGATGGAAGTTTTCTGAGCGGTT  100

seq1  ATACCAGAAGGGAAACTGACCTTCCCTTCTTGCTCCACTGGGATTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGAAGGGAAACTGACCTTCCCTTCTTGCTCCACTGGGATTCTTAA  150

seq1  TAAAGGCAAGCCAAGGAAATGTGGTACGGCTTTGTAAATGGTGAAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCAAGCCAAGGAAATGTGGTACGGCTTTGTAAATGGTGAAAGCAG  200

seq1  GTGAGACTCATTGTATGTAGAGAGGTATTAAATATAGATATCAGAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTCATTGTATGTAGAGAGGTATTAAATATAGATATCAGAGACTC  250

seq1  TGGTTGGTATCATTTAAACAGGATTATTTTTAAATTTTTACAATGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTATCATTTAAACAGGATTATTTTTAAATTTTTACAATGCAAAG  300

seq1  ACAGCCTAGCACAGTTGCACCCTGGTTTAGAGTAAGTACTGTTTCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTAGCACAGTTGCACCCTGGTTTAGAGTAAGTACTGTTTCTTTTT  350

seq1  CTTTACTTGGGAGAATGAGTTCAGGTGTGTGTGACTAACCCTTGTTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTGGGAGAATGAGTTCAGGTGTGTGTGACTAACCCTTGTTGGAG  400

seq1  GGAAGTGCTTTGTCTACAAGTAAAAGAAATGTTATTCCTGGTTGTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGCTTTGTCTACAAGTAAAAGAAATGTTATTCCTGGTTGTTTATA  450

seq1  TGTGAATGGCAGAGTGAAATTTTCAGCTTTGAAGTGTATATGTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGGCAGAGTGAAATTTTCAGCTTTGAAGTGTATATGTTTTTTTT  500

seq1  TTCTTTTTTTACAAAGAATCCCAAACTCCTTAAATTCCCCTTTATTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTACAAAGAATCCCAAACTCCTTAAATTCCCCTTTATTAGAT  550

seq1  AATTCAAAACAAATAGTTCAGTGAAAAGAAGGCAATAGAATGTATTTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAACAAATAGTTCAGTGAAAAGAAGGCAATAGAATGTATTTCGT  600

seq1  AAGTAGCAGAAGCAGACAGGACTGTTTCCCCTCCCCCACCAAACCATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCAGAAGCAGACAGGACTGTTTCCCCTCCCCCACCAAACCATCTG  650

seq1  TGAATACAAGAATTTTTTTTCTGATGAAAAAAAT-AAATGAGAAAAATAA  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAATACAAGAATTTTTTTTCTGATGAAAAAAATAAAATGAGAAAAATAA  700

seq1  TAATGCACAATAATTATTTCATACTAATCCATTTTCAAGTAAGGACTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCACAATAATTATTTCATACTAATCCATTTTCAAGTAAGGACTGCC  750

seq1  TGAAGCAAGAATTGTGTTCCTTTTTAGTGGGCTCCCTCTTGGATGGGCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAGAATTGTGTTCCTTTTTAGTGGGCTCCCTCTTGGATGGGCTC  800

seq1  TCCCTGTGATGGTAGCTTTCGC-TTTTCTTCCCCTTCCTTTGCCTTTTGT  848
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCCTGTGATGGTAGCTTTCGCTTTTTCTTCCCCTTCCTTTGCCTTTTGT  850

seq1  TCTGCCTTG-AAAGGCTCGGAAATGAGCATAATGGCTGTTTTCCTTGGGC  897
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTGAAAAGGCTCGGAAATGAGCATAATGGCTGTTTTCCTTGGGC  900

seq1  AGTGAGCTGAGAGTGAAAGCTGGGCTCCCTGTGGACTAAGCATTTTGATG  947
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  AGTGAGCTGAGAGTGAAAGCTGGGCTTCCTGTGAACTAAGCATTTTGATG  950

seq1  CAAATTTACCCAGAA--GAAACAGTGCTGCAGACAGCTGCTGGACTC-AC  994
      |||||||||||| ||   ||||||||||||||| ||||||||||||| ||
seq2  CAAATTTACCCAAAAAGAAAACAGTGCTGCAGAAAGCTGCTGGACTCTAC  1000

seq1  CTAGTGCAAGGGG-AAGCTT-GGCTGCT  1020
        ||||||||||| |||||| |||||||
seq2  TAAGTGCAAGGGGAAAGCTTGGGCTGCT  1028