BAC Information

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BAC

Clone NameB6Ng01-096N18
Chromosome9 (Build37)
Map Location 21,565,888 - 21,708,607
singlet/doubletdoublet
Overlap geneAnkrd25, Dock6, EG624219
Upstream geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24
Downstream geneRab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096N18.bB6Ng01-096N18.g
ACCDH907389DH907390
length200789
definitionDH907389|Mus musculus domesticus DNA, BAC clone: B6Ng01-096N18, 5' end.DH907390|Mus musculus domesticus DNA, BAC clone: B6Ng01-096N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,565,888 - 21,566,087)(21,707,821 - 21,708,607)
sequence
cagaccagcctgaactacaaagtgaaccctgtctccttaaatacctatac
cccagagctggagagatggctcagcggttaagagcactcactcactgctt
tcccagaggttctgagttcaatttccagcaaccacatggtggctcacaac
catctgtagtgagatccaatgtctttttttttttttttttgggggggggg

gaattctagaaaagtctctaaatgtacaaacccttgcctttgggcttccg
tagttctgcttctggttaactgttcttgttaactgagtatagcaaccaga
atatggtttttatggttaaaagctcaccctgaaaaaggttcgtggctaca
caaggatcctgaacacccagtgtagtccctggccagctagtaaagacttc
cgcctgcttaaacccactttgcagtcttctctggtgggtgccttacaacc
gcagcttcatccttgacagaggccaaagatgccaaatgtgttttgggagc
tcttagcactgatctggttcctaaatgattctagggttaccttttgtgag
gcagaaagctaatagcagttttgtttagagaaaaggccttgttaagaacc
tctggcctgtgtgctgacctaacattccattggggcagggtctcactctt
gtagcccttaaaaattctaaaatccacaccacaaggggctggagaggtgg
ctctgtgattaagagcactggctactcttgcagaggtttgattcccagca
tccacatggtggttcacaaccaccagtaacgccagtcccaggggatctga
tgccctcttctgacttccatgaataccatgcatagacacagtgtacagac
atacattcaggcaaacacccataagcaaagtgaataaataaatccccaaa
cccagaacccactgggcttgtgccccggctcccctcccccccttgcagct
ttgcacttttgtttagttgggcggggggagggatgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21565888_21566087
seq2: B6Ng01-096N18.b_55_254

seq1  CAGACCAGCCTGAACTACAAAGTGAACCCTGTCTCCTTAAATACCTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGCCTGAACTACAAAGTGAACCCTGTCTCCTTAAATACCTATAC  50

seq1  CCCAGAGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTCACTCACTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTCACTCACTGCTT  100

seq1  TCCCAGAGGTTCTGAGTTCAATTTCCAGCAACCACATGGTGGCTCACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGGTTCTGAGTTCAATTTCCAGCAACCACATGGTGGCTCACAAC  150

seq1  CATCTGTAGTGAGATCCAATGTCTTTTTTTTTTTTTTTTTGGGGGGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTAGTGAGATCCAATGTCTTTTTTTTTTTTTTTTTGGGGGGGGGG  200

seq1: chr9_21707821_21708607
seq2: B6Ng01-096N18.g_70_858 (reverse)

seq1  TTCCCATCCCTCCCCCCGCCCAACTAA--CAAAGTGCAAAGCTGCAAGGG  48
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  TTCCCATCCCTCCCCCCGCCCAACTAAACAAAAGTGCAAAGCTGCAAGGG  50

seq1  GGGGAGGGGAGCCGGGGCACAAGCCCAGTGGGTTCTGGGTTTGGGGATTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGAGCCGGGGCACAAGCCCAGTGGGTTCTGGGTTTGGGGATTT  100

seq1  ATTTATTCACTTTGCTTATGGGTGTTTGCCTGAATGTATGTCTGTACACT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCACTTTGCTTATGGGTGTTTGCCTGAATGTATGTCTGTACACT  150

seq1  GTGTCTATGCATGGTATTCATGGAAGTCAGAAGAGGGCATCAGATCCCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATGCATGGTATTCATGGAAGTCAGAAGAGGGCATCAGATCCCCT  200

seq1  GGGACTGGCGTTACTGGTGGTTGTGAACCACCATGTGGATGCTGGGAATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGGCGTTACTGGTGGTTGTGAACCACCATGTGGATGCTGGGAATC  250

seq1  AAACCTCTGCAAGAGTAGCCAGTGCTCTTAATCACAGAGCCACCTCTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCTGCAAGAGTAGCCAGTGCTCTTAATCACAGAGCCACCTCTCCA  300

seq1  GCCCCTTGTGGTGTGGATTTTAGAATTTTTAAGGGCTACAAGAGTGAGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTGTGGTGTGGATTTTAGAATTTTTAAGGGCTACAAGAGTGAGAC  350

seq1  CCTGCCCCAATGGAATGTTAGGTCAGCACACAGGCCAGAGGTTCTTAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCAATGGAATGTTAGGTCAGCACACAGGCCAGAGGTTCTTAACA  400

seq1  AGGCCTTTTCTCTAAACAAAACTGCTATTAGCTTTCTGCCTCACAAAAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTTTCTCTAAACAAAACTGCTATTAGCTTTCTGCCTCACAAAAGG  450

seq1  TAACCCTAGAATCATTTAGGAACCAGATCAGTGCTAAGAGCTCCCAAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTAGAATCATTTAGGAACCAGATCAGTGCTAAGAGCTCCCAAAAC  500

seq1  ACATTTGGCATCTTTGGCCTCTGTCAAGGATGAAGCTGCGGTTGTAAGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGCATCTTTGGCCTCTGTCAAGGATGAAGCTGCGGTTGTAAGGC  550

seq1  ACCCACCAGAGAAGACTGCAAAGTGGGTTTAAGCAGGCGGAAGTCTTTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCAGAGAAGACTGCAAAGTGGGTTTAAGCAGGCGGAAGTCTTTAC  600

seq1  TAGCTGGCCAGGGACTACACTGGGTGTTCAGGATCCTTGTGTAGCCACGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGCCAGGGACTACACTGGGTGTTCAGGATCCTTGTGTAGCCACGA  650

seq1  ACCTTTTTCAGGGTGAGCTTTTAACCATAAAAACCATATTCTGGTTGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTCAGGGTGAGCTTTTAACCATAAAAACCATATTCTGGTTGCTA  700

seq1  TACTCAGTTAACAAGAACAGTTAACCAGAAGCAGAACTACGGAAGCCCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGTTAACAAGAACAGTTAACCAGAAGCAGAACTACGGAAGCCCAA  750

seq1  AGGCAAGGGTTTGTACATTTAGAGACTTTTCTAGAATTC  787
      |||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGGTTTGTACATTTAGAGACTTTTCTAGAATTC  789