BAC Information

Click to search

BAC

Clone NameB6Ng01-096O22
Chromosome9 (Build37)
Map Location 71,381,229 - 71,520,588
singlet/doubletdoublet
Overlap geneAA407270, LOC547043, LOC100040537, Cgnl1
Upstream geneSltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a
Downstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096O22.bB6Ng01-096O22.g
ACCDH907438DH907439
length1,1421,139
definitionDH907438|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O22, 5' end.DH907439|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,519,450 - 71,520,588)(71,381,229 - 71,382,342)
sequence
gaattcatttgatgtgtaggagtgtttgcttgcatgtgtgtatgtgcacc
ccatgcatgcagttgcccatggaggccagaagagggcatcagattccctg
gaactgatggggagctgtgagctgccatgcggatgctggaaaacggaacc
tgggtcctctggaagtgtagcaaagtagcaagtgctccgaaacactgagc
cctgactgactcctctcttgctctaagtattgcccatagcatctatggtc
tgtgaatcagtcctggggaaatcggttataactcctaggtgctttccaca
gagggtactactaagatctgcagctgaagtgagcccagttcaccacatag
ataggctgcatttgatacggggtttgaactgaagacttgggcgaggttag
agtgaatatgtagactagagacaatttaggaaggtaatagaggccaaact
agctgatgttttgattctacttgatatattctaagagcgaccgtgggttc
agagctaagctttgtcatggtggatgttttgttctgcaagatcattctga
aagaccagtgccaagatgtgtgttagatttggggcgttgagcttttagaa
gtgagaaggtagggagccgaacttgacaatgtgtgtgtgtgtgtgtgtgt
gcatgcgcttctttcaggctgagaaggaagcattatgtgtttgtctttca
cacccattcccattggtgagcagcctctgcagccagggtgtagctcagtt
tggtagaatgcttgccctagtatgcatgaagccctgggtttaattcctag
cactacataaactaggcatgggtagaaacacacctgtaatcccatcactg
aggagatagaggcaggagagtcagaagtgcagggtttttcctgggctaca
tagcgagttcagggctaacctggactacatgtaaccttgtttcaaaatca
aaacaacacaacaaaaacaagtgaaggggcctgatgagctgagctcaggt
tctcagccagagatgtagagaaggactttgttaccagaagggttcaagga
gcagggacgggttccccccccacctccaattcagaatcatctgagtgcag
aattcagtttggaagtagcctttaagatctcattgagcttaa
gaattccatccaagcgtccacctctcttttgcttcctcttgtcctgagaa
ggccttgttttcgacccaatctcttgctcttgatctggcagagttgttac
ctatacccttggcaaatcaggaatcatgtttgctcccttctaccacacga
tgaaaataattagcatattctgcccttcacctgaagggcttggtttggta
gcaatccccaggactctggtctagaagttttgtcatgttgtcagcttact
gtcatattttggagctatgtttggcttagtttacttgctatgatgcggat
ggaacccaggccctttggagcagtcattctgccactgagctacatctcta
tccttttacattataagtttaaattcccttctccttggtaaaggaagaga
caacatagaaaatgcaaaaataaaaataataaagcttagcctccttttga
aaatagcaatgcacagggcagtttggtgagatcagactgtgtgtgcgcta
acacagcctgccagaacagcttcaggaggatgaagaagagggtgcattac
ctcatgggaggggatgaatcaaggccccgaccaaatgaaactgaaaaatt
gctaaatgaagctctgagtggagaaaatgaaaaatcaatgaaggcccaga
ggagaaaggcccattcttcatctccatgggctgcagcaggcagtggaatc
cactttcaattaatgtgtcttgtggcattcagccaggctggatatgaacg
gggtgcatattttaatcaatttttttctattaagtttgaagtaatatata
ataatagaactatgctagtcagaaggatcagttggaaatgggctttctga
gctaagataatcttatttgggtttgattttccatcctagattgatgggaa
ctcaactttctcaggagtagaccagcatgcagtttcctcctggggtgcct
aagaacgacttaagctatcgagattgtcagaaaggatgaacaggagtggc
tttcccagcgtctgttgcatccactggggaagggaaggaagacacgttac
tgggttatcagcctttggacagctttagcttctgaatactcaacaaacaa
cccttacatggttaattcacgtctaacaagaaaaccaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_71519450_71520588
seq2: B6Ng01-096O22.b_48_1189 (reverse)

seq1  TTAAGCTACAGTGAGATCTTAAAGGCCTTACCTCC-AACTGAATTCTTGC  49
      ||||||| || |||||||||||||||  ||| ||| |||||||||| |||
seq2  TTAAGCT-CAATGAGATCTTAAAGGC--TACTTCCAAACTGAATTC-TGC  46

seq1  ACCAGGAAGGATCTGAATTGGGGGT-GGGGGGGAACCCGT-CCTGCTCCC  97
      ||   || |  |||||||||| ||| |||||||||||||| |||||||| 
seq2  ACTCAGATGATTCTGAATTGGAGGTGGGGGGGGAACCCGTCCCTGCTCCT  96

seq1  TGA--CCCTCTGGT-ACAAGTTCCTTCTCTACCATCTCTGGCTGAGAACC  144
      |||  || |||||| ||||  |||||||||| ||||||||||||||||||
seq2  TGAACCCTTCTGGTAACAAAGTCCTTCTCTA-CATCTCTGGCTGAGAACC  145

seq1  TGGGCTCAGCTCATCAGGCCCCTTCACTTTGTTTTTTGTTGTTGTTGTTT  194
      || ||||||||||||||||||||||||||   ||||||||| ||||||||
seq2  TGAGCTCAGCTCATCAGGCCCCTTCACTT--GTTTTTGTTG-TGTTGTTT  192

seq1  TGATTTTGAAACAAGGTTACATGTAGTCCAGGTTAGCCTTGAACTCGCTA  244
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGATTTTGAAACAAGGTTACATGTAGTCCAGGTTAGCCCTGAACTCGCTA  242

seq1  TGTAGCCCAGG-ATAACCCTGCACTTCTGACTCTCCTGCCTCTATCTCCT  293
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCAGGAAAAACCCTGCACTTCTGACTCTCCTGCCTCTATCTCCT  292

seq1  CAGTGATGGGATTACAGGTGTG-TTCTA-CCATGCCTAGTTTATGTAGTG  341
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  CAGTGATGGGATTACAGGTGTGTTTCTACCCATGCCTAGTTTATGTAGTG  342

seq1  CTAGGAATTAAACCCAGGGCTTCATGCATACTAGGGCAAGCATTCTACC-  390
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTAGGAATTAAACCCAGGGCTTCATGCATACTAGGGCAAGCATTCTACCA  392

seq1  AACTGAGCTACACCCTGGCTGCAGAGGCTGCTCACCAATGGGAATGGGTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCTACACCCTGGCTGCAGAGGCTGCTCACCAATGGGAATGGGTG  442

seq1  TG-AAGACAAACACATAATGCTTCCTTCTCAGCCTGAAAGAAGCGCATGC  489
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACAAACACATAATGCTTCCTTCTCAGCCTGAAAGAAGCGCATGC  492

seq1  ACACACACACACACACACACATTGTCAAGTTCGGCTCCCTACCTTCTCAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACATTGTCAAGTTCGGCTCCCTACCTTCTCAC  542

seq1  TTCTAAAAGCTCAACGCCCCAAATCTAACACACATCTTGGCACTGGTCTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAGCTCAACGCCCCAAATCTAACACACATCTTGGCACTGGTCTT  592

seq1  TCAGAATGATCTTGCAGAACAAAACATCCACCATGACAAAGCTTAGCTCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGATCTTGCAGAACAAAACATCCACCATGACAAAGCTTAGCTCT  642

seq1  GAACCCACGGTCGCTCTTAGAATATATCAAGTAGAATCAAAACATCAGCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACGGTCGCTCTTAGAATATATCAAGTAGAATCAAAACATCAGCT  692

seq1  AGTTTGGCCTCTATTACCTTCCTAAATTGTCTCTAGTCTACATATTCACT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGCCTCTATTACCTTCCTAAATTGTCTCTAGTCTACATATTCACT  742

seq1  CTAACCTCGCCCAAGTCTTCAGTTCAAACCCCGTATCAAATGCAGCCTAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCGCCCAAGTCTTCAGTTCAAACCCCGTATCAAATGCAGCCTAT  792

seq1  CTATGTGGTGAACTGGGCTCACTTCAGCTGCAGATCTTAGTAGTACCCTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGTGAACTGGGCTCACTTCAGCTGCAGATCTTAGTAGTACCCTC  842

seq1  TGTGGAAAGCACCTAGGAGTTATAACCGATTTCCCCAGGACTGATTCACA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAGCACCTAGGAGTTATAACCGATTTCCCCAGGACTGATTCACA  892

seq1  GACCATAGATGCTATGGGCAATACTTAGAGCAAGAGAGGAGTCAGTCAGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAGATGCTATGGGCAATACTTAGAGCAAGAGAGGAGTCAGTCAGG  942

seq1  GCTCAGTGTTTCGGAGCACTTGCTACTTTGCTACACTTCCAGAGGACCCA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGTTTCGGAGCACTTGCTACTTTGCTACACTTCCAGAGGACCCA  992

seq1  GGTTCCGTTTTCCAGCATCCGCATGGCAGCTCACAGCTCCCCATCAGTTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCGTTTTCCAGCATCCGCATGGCAGCTCACAGCTCCCCATCAGTTC  1042

seq1  CAGGGAATCTGATGCCCTCTTCTGGCCTCCATGGGCAACTGCATGCATGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATCTGATGCCCTCTTCTGGCCTCCATGGGCAACTGCATGCATGG  1092

seq1  GGTGCACATACACACATGCAAGCAAACACTCCTACACATCAAATGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACATACACACATGCAAGCAAACACTCCTACACATCAAATGAATTC  1142

seq1: chr9_71381229_71382342
seq2: B6Ng01-096O22.g_69_1207

seq1  GAATTCCATCCAAGCGTCCACCTCTCTTTTGCTTCCTCTTGTCCTGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCAAGCGTCCACCTCTCTTTTGCTTCCTCTTGTCCTGAGAA  50

seq1  GGCCTTGTTTTCGACCCAATCTCTTGCTCTTGATCTGGCAGAGTTGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGTTTTCGACCCAATCTCTTGCTCTTGATCTGGCAGAGTTGTTAC  100

seq1  CTATACCCTTGGCAAATCAGGAATCATGTTTGCTCCCTTCTACCACACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCCTTGGCAAATCAGGAATCATGTTTGCTCCCTTCTACCACACGA  150

seq1  TGAAAATAATTAGCATATTCTGCCCTTCACCTGAAGGGCTTGGTTTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAATTAGCATATTCTGCCCTTCACCTGAAGGGCTTGGTTTGGTA  200

seq1  GCAATCCCCAGGACTCTGGTCTAGAAGTTTTGTCATGTTGTCAGCTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCCAGGACTCTGGTCTAGAAGTTTTGTCATGTTGTCAGCTTACT  250

seq1  GTCATATTTTGGAGCTATGTTTGGCTTAGTTTACTTGCTATGATGCGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTTTGGAGCTATGTTTGGCTTAGTTTACTTGCTATGATGCGGAT  300

seq1  GGAACCCAGGCCCTTTGGAGCAGTCATTCTGCCACTGAGCTACATCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCAGGCCCTTTGGAGCAGTCATTCTGCCACTGAGCTACATCTCTA  350

seq1  TCCTTTTACATTATAAGTTTAAATTCCCTTCTCCTTGGTAAAGGAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTACATTATAAGTTTAAATTCCCTTCTCCTTGGTAAAGGAAGAGA  400

seq1  CAACATAGAAAATGCAAAAATAAAAATAATAAAGCTTAGCCTCCTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAGAAAATGCAAAAATAAAAATAATAAAGCTTAGCCTCCTTTTGA  450

seq1  AAATAGCAATGCACAGGGCAGTTTGGTGAGATCAGACTGTGTGTGCGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAATGCACAGGGCAGTTTGGTGAGATCAGACTGTGTGTGCGCTA  500

seq1  ACACAGCCTGCCAGAACAGCTTCAGGAGGATGAAGAAGAGGGTGCATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCTGCCAGAACAGCTTCAGGAGGATGAAGAAGAGGGTGCATTAC  550

seq1  CTCATGGGAGGGGATGAATCAAGGCCCCGACCAAATGAAACTGAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGGAGGGGATGAATCAAGGCCCCGACCAAATGAAACTGAAAAATT  600

seq1  GCTAAATGAAGCTCTGAGTGGAGAAAATGAAAAATCAATGAAGGCCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGAAGCTCTGAGTGGAGAAAATGAAAAATCAATGAAGGCCCAGA  650

seq1  GGAGAAAGGCCCATTCTTCATCTCCATGGGCTGCAGCAGGCAGTGGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGGCCCATTCTTCATCTCCATGGGCTGCAGCAGGCAGTGGAATC  700

seq1  CACTTTCAATTAATGTGTCTTGTGGCATTCAGCCAGGCTGGATATGAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAATTAATGTGTCTTGTGGCATTCAGCCAGGCTGGATATGAACG  750

seq1  GGGTGCATATTTTAATCAA-TTTTTTCTATTAAGTTTGAAGTAATATATA  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGTGCATATTTTAATCAATTTTTTTCTATTAAGTTTGAAGTAATATATA  800

seq1  ATAATAGAACTATGCTAGTCAGAAGGATCAGTTGG-AATGGGC-TTCTGA  847
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  ATAATAGAACTATGCTAGTCAGAAGGATCAGTTGGAAATGGGCTTTCTGA  850

seq1  GCTAAGATAATCTTATTT-GGTTTGA-TTTCCATCCTAGATTGATGGGAA  895
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  GCTAAGATAATCTTATTTGGGTTTGATTTTCCATCCTAGATTGATGGGAA  900

seq1  CTCAAC-TTCTCA-GAGTAGACCAGCATGCAG-TTCCTCCT-GGGTGCCT  941
      |||||| |||||| |||||||||||||||||| |||||||| ||||||||
seq2  CTCAACTTTCTCAGGAGTAGACCAGCATGCAGTTTCCTCCTGGGGTGCCT  950

seq1  AAGAACGACTT-AGCTATCGAGA-TGTCAGGAAAGGATGAACA-GAGTGG  988
      ||||||||||| ||||||||||| ||||| ||||||||||||| ||||||
seq2  AAGAACGACTTAAGCTATCGAGATTGTCA-GAAAGGATGAACAGGAGTGG  999

seq1  C-TTCCCAGCGCCTG-TGCATCCACTGGG--AAGGAAGGAAGACACG-TA  1033
      | ||||||||| ||| |||||||||||||  | |||||||||||||| ||
seq2  CTTTCCCAGCGTCTGTTGCATCCACTGGGGAAGGGAAGGAAGACACGTTA  1049

seq1  CTGGG-TATCAGCC-TTGGACAGC-TTAGCTCCTG-ATACTC-ACAAACA  1078
      ||||| |||||||| ||||||||| |||||| ||| |||||| |||||||
seq2  CTGGGTTATCAGCCTTTGGACAGCTTTAGCTTCTGAATACTCAACAAACA  1099

seq1  ACCC-TACATGGTTA--TCACCGCCAACAAG-AAACCAAG  1114
      |||| ||||||||||  ||||  | |||||| ||||||||
seq2  ACCCTTACATGGTTAATTCACGTCTAACAAGAAAACCAAG  1139