BAC Information

Click to search

BAC

Clone NameB6Ng01-096P17
Chromosome9 (Build37)
Map Location 48,731,371 - 48,923,488
singlet/doubletdoublet
Overlap geneHtr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5
Upstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a
Downstream geneEG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P17.bB6Ng01-096P17.g
ACCDH907476DH907477
length1,0981,068
definitionDH907476|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P17, 5' end.DH907477|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,731,371 - 48,732,466)(48,922,432 - 48,923,488)
sequence
gaattctgtggcttgatcttggggtaagctcagggattggtgggattctg
aggcctgatttagggcttttttttccctctgtaaggcagagcttagccac
ctgcatcttgagaagctggaaacccctggagacacagagggtttagagta
gtctgggggcagaacctggccattcacatgctgtgaggggctacagaaat
gaatagctgaatcaatgacatcaggaagaaaaaaaagtaggagatccatg
caaatctatctgtgtcctggggtcctttctgcctgccctcttagggtggc
cgatcaactgagacaggaaggatgctgatggcattgaagctgggattgtt
gactgcctcctctgggcctgagaaggaattgggacgatacctctgttgga
tggcttttctaggagagatagaaacaaatatctatttacccaccaacaac
agaccaaacaaatattttcatccaagtctatcttaatgaaccaatgagtt
tattggggttgtttataggcacatgggtggctcacaggcagctacattgc
caaaaggcccacatgggagatgaacctttctcccacttccagaagaggaa
gttttaatttgaaggaattagctacacaatacccaacccatatgtctctg
atattcttcctgcttctttcttgatatcccctgagttttagagaaagatg
cttgattattttctttcatttgtggccccatgtcagaataagagtcattt
atttcttagcagcttgactggttatgagtctacaccaaaactactaccag
ctggggaaaaaaaaggttttctccaagataaagatgacaccaataagcca
tgggtgtaaacacaaaatgtttaggaggcaactagacaggcactccatgt
tttttttttagacagatgtctagtccaaactccatcccatctcagcattc
aagcattatgatgtcccagcaaaaggtcattcagacttcatcttcagggc
aagctggagtcctcttcatgacagcccttttttgtttcctcagaactact
ctcatccctctgtatcggctccctcggcctctctctgatttgtctctt
gaattctcctggaggagaaggaggctcctgcttcttcacattatacctgc
agacttcaccttccataacactgtagtatgaaatccctgggtagtctggc
ttccccagtccatgtgcactcaccaggggaccaaactgcctcgagtctcc
tgccccctccttccaccaccagcaagtcccctgttcctccctctaccacc
agccacacctggcatgcgtctgcccttccatccaggtagccagcacacaa
catgcggtgtgtaagtgccccactgtacatgcatgagctgttgcagaggt
aggtgctgagcaggggtaccattgtgtcctgcagtgtatctgagctatga
gctgtaggagacacagagaaaagctgcagggtaccaagccaggccaaaaa
ggcagaagatcaaggaagagaagagtcatagctcctcaggacacaaagac
ccaaagagggaagattgggcagggctatggacctgggccaaaggacaaga
gtcttccagactcccggctgggaatgaggaggccaaggggaagatggagt
ctaccaaattctgaggctgtggtgctcctggggccaaaagcaggagagtg
aaagggcctgagctgagggaagtgttcagtgattgctctccataggaata
cccaggcaggggaatactcaagagtcaccaaggggggaaaaaggcgccat
tgtcagaagaccaggggagggggaagtgctgcagcttagaagatgcctct
ccctccccactttatactgagggccctgggagctcactcactatggctgg
ggtcggtgtggccccagccagacacccagcactgcgacccccattggaaa
gttctgctcctttggccggcaagcacacagcgcccacggtgtcttgttga
gaaacacatagttctggtcctggctcagctaggcttctctcctgcagagc
ctggagtgaagactcctcctcctccgctctcaaccgtccctgggacctat
cctctaccaccaagtcttactagaactaaagaggttgaacaattgtacca
ccttgggggaaagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_48731371_48732466
seq2: B6Ng01-096P17.b_49_1146

seq1  GAATTCTGTGGCTTGATCTTGGGGTAAGCTCAGGGATTGGTGGGATTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCTTGATCTTGGGGTAAGCTCAGGGATTGGTGGGATTCTG  50

seq1  AGGCCTGATTTAGGGCTTTTTTTTCCCTCTGTAAGGCAGAGCTTAGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGATTTAGGGCTTTTTTTTCCCTCTGTAAGGCAGAGCTTAGCCAC  100

seq1  CTGCATCTTGAGAAGCTGGAAACCCCTGGAGACACAGAGGGTTTAGAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTTGAGAAGCTGGAAACCCCTGGAGACACAGAGGGTTTAGAGTA  150

seq1  GTCTGGGGGCAGAACCTGGCCATTCACATGCTGTGAGGGGCTACAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGGCAGAACCTGGCCATTCACATGCTGTGAGGGGCTACAGAAAT  200

seq1  GAATAGCTGAATCAATGACATCAGGAAGAAAAAAAAGTAGGAGATCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCTGAATCAATGACATCAGGAAGAAAAAAAAGTAGGAGATCCATG  250

seq1  CAAATCTATCTGTGTCCTGGGGTCCTTTCTGCCTGCCCTCTTAGGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTATCTGTGTCCTGGGGTCCTTTCTGCCTGCCCTCTTAGGGTGGC  300

seq1  CGATCAACTGAGACAGGAAGGATGCTGATGGCATTGAAGCTGGGATTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCAACTGAGACAGGAAGGATGCTGATGGCATTGAAGCTGGGATTGTT  350

seq1  GACTGCCTCCTCTGGGCCTGAGAAGGAATTGGGACGATACCTCTGTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTCCTCTGGGCCTGAGAAGGAATTGGGACGATACCTCTGTTGGA  400

seq1  TGGCTTTTCTAGGAGAGATAGAAACAAATATCTATTTACCCACCAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTCTAGGAGAGATAGAAACAAATATCTATTTACCCACCAACAAC  450

seq1  AGACCAAACAAATATTTTCATCCAAGTCTATCTTAATGAACCAATGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAACAAATATTTTCATCCAAGTCTATCTTAATGAACCAATGAGTT  500

seq1  TATTGGGGTTGTTTATAGGCACATGGGTGGCTCACAGGCAGCTACATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGGTTGTTTATAGGCACATGGGTGGCTCACAGGCAGCTACATTGC  550

seq1  CAAAAGGCCCACATGGGAGATGAACCTTTCTCCCACTTCCAGAAGAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCCCACATGGGAGATGAACCTTTCTCCCACTTCCAGAAGAGGAA  600

seq1  GTTTTAATTTGAAGGAATTAGCTACACAATACCCAACCCATATGTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATTTGAAGGAATTAGCTACACAATACCCAACCCATATGTCTCTG  650

seq1  ATATTCTTCCTGCTTCTTTCTTGATATCCCCTGAGTTTTAGAGAAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTCCTGCTTCTTTCTTGATATCCCCTGAGTTTTAGAGAAAGATG  700

seq1  CTTGATTATTTTCTTTCATTTGTGGCCCCATGTCAGAATAAGAGTCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTATTTTCTTTCATTTGTGGCCCCATGTCAGAATAAGAGTCATTT  750

seq1  ATTTCTTAGCAGCTTGACTGGTTATGAGTCTACACCAAAACTACTACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAGCAGCTTGACTGGTTATGAGTCTACACCAAAACTACTACCAG  800

seq1  CTGGGGAAAAAAAAGGTTTTCTCCAAGATAAAGATGACACCAATAAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAAAAAAAGGTTTTCTCCAAGATAAAGATGACACCAATAAGCCA  850

seq1  TGGGTGTAAACAC-AAATGTTTAGGAGGCAACTAGACAGGCACTCCATG-  898
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  TGGGTGTAAACACAAAATGTTTAGGAGGCAACTAGACAGGCACTCCATGT  900

seq1  TTTTTTTTTAGACAGATGTCTAGTCCAAACTCCATCCCATCTCAGCATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAGACAGATGTCTAGTCCAAACTCCATCCCATCTCAGCATTC  950

seq1  AAGCAATATGATGTCCCAGCAAAAGGTCATTCAGACTTCATCTTCAAGGC  998
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGCATTATGATGTCCCAGCAAAAGGTCATTCAGACTTCATCTTCAGGGC  1000

seq1  AAGCT-GAGTCCTC-TCATGACAGCCC-CTTTTGTTTCCTCAGAACTTAC  1045
      ||||| |||||||| ||||||||||||  ||||||||||||||||| |||
seq2  AAGCTGGAGTCCTCTTCATGACAGCCCTTTTTTGTTTCCTCAGAAC-TAC  1049

seq1  TCTCATCTCTCTGTTTCTGCTTCTCTCTGTCTCTCTCTGTTTTTGTCTCT  1095
      ||||||| |||||| || || || ||| | |||||||||  |||||||||
seq2  TCTCATCCCTCTGTATCGGC-TCCCTCGGCCTCTCTCTG-ATTTGTCTCT  1097

seq1  T  1096
      |
seq2  T  1098

seq1: chr9_48922432_48923488
seq2: B6Ng01-096P17.g_67_1134 (reverse)

seq1  CCCCCCT---CCCCAAGGTGGTAC-ATTGTTCAACCTCTTT--GTCTAGT  44
      |||||||   |||||||||||||| ||||||||||||||||   ||||||
seq2  CCCCCCTTTCCCCCAAGGTGGTACAATTGTTCAACCTCTTTAGTTCTAGT  50

seq1  AAG-CTTGGTGGTAGAGGCTAGGTCCCA-GGACGGTTGAGAAGCGGAGGA  92
      ||| |||||||||||||| ||||||||| ||||||||||| |||||||||
seq2  AAGACTTGGTGGTAGAGGATAGGTCCCAGGGACGGTTGAG-AGCGGAGGA  99

seq1  GGA-GAGTCTTCACT-CAGGCTCTGCAGGAGAGAAGCCTAGCCTGAGCCA  140
      ||| ||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  GGAGGAGTCTTCACTCCAGGCTCTGCAGGAGAGAAGCCTAG-CTGAGCCA  148

seq1  GGACCAGAACTATGTGTTTCTCCAC-AGACACCGTGGGCGCTGTGTGCTT  189
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  GGACCAGAACTATGTGTTTCTCAACAAGACACCGTGGGCGCTGTGTGCTT  198

seq1  GCCGGCC-AAGGAGCAGCACTTTCC-ATGGGGGTCGCAGTGCTGGGTGTC  237
      ||||||| ||||||||| ||||||| ||||||||||||||||||||||||
seq2  GCCGGCCAAAGGAGCAGAACTTTCCAATGGGGGTCGCAGTGCTGGGTGTC  248

seq1  TGGCTGGGGCCACACCGACCCCAGCCATAGTGAGTGAGCTCCCAGGGCCC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGGCCACACCGACCCCAGCCATAGTGAGTGAGCTCCCAGGGCCC  298

seq1  TCAGTATAAAGTGGGGAGGGAGAGGCATCTTCTAAGCTGCAGCACTTCCC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATAAAGTGGGGAGGGAGAGGCATCTTCTAAGCTGCAGCACTTCCC  348

seq1  CCTCCCCTGGTCTTCTGACAATGGCGCCTTTTTCCCCCCTTGGTGACTCT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTGGTCTTCTGACAATGGCGCCTTTTTCCCCCCTTGGTGACTCT  398

seq1  TGAGTATTCCCCTGCCTGGGTATTCCTATGGAGAGCAATCACTGAACACT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTCCCCTGCCTGGGTATTCCTATGGAGAGCAATCACTGAACACT  448

seq1  TCCCTCAGCTCAGGCCCTTTCACTCTCCTGCTTTTGGCCCCAGGAGCACC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGCTCAGGCCCTTTCACTCTCCTGCTTTTGGCCCCAGGAGCACC  498

seq1  ACAGCCTCAGAATTTGGTAGACTCCATCTTCCCCTTGGCCTCCTCATTCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCAGAATTTGGTAGACTCCATCTTCCCCTTGGCCTCCTCATTCC  548

seq1  CAGCCGGGAGTCTGGAAGACTCTTGTCCTTTGGCCCAGGTCCATAGCCCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGGGAGTCTGGAAGACTCTTGTCCTTTGGCCCAGGTCCATAGCCCT  598

seq1  GCCCAATCTTCCCTCTTTGGGTCTTTGTGTCCTGAGGAGCTATGACTCTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATCTTCCCTCTTTGGGTCTTTGTGTCCTGAGGAGCTATGACTCTT  648

seq1  CTCTTCCTTGATCTTCTGCCTTTTTGGCCTGGCTTGGTACCCTGCAGCTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTGATCTTCTGCCTTTTTGGCCTGGCTTGGTACCCTGCAGCTT  698

seq1  TTCTCTGTGTCTCCTACAGCTCATAGCTCAGATACACTGCAGGACACAAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTCTCCTACAGCTCATAGCTCAGATACACTGCAGGACACAAT  748

seq1  GGTACCCCTGCTCAGCACCTACCTCTGCAACAGCTCATGCATGTACAGTG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCCTGCTCAGCACCTACCTCTGCAACAGCTCATGCATGTACAGTG  798

seq1  GGGCACTTACACACCGCATGTTGTGTGCTGGCTACCTGGATGGAAGGGCA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTTACACACCGCATGTTGTGTGCTGGCTACCTGGATGGAAGGGCA  848

seq1  GACGCATGCCAGGTGTGGCTGGTGGTAGAGGGAGGAACAGGGGACTTGCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCATGCCAGGTGTGGCTGGTGGTAGAGGGAGGAACAGGGGACTTGCT  898

seq1  GGTGGTGGAAGGAGGGGGCAGGAGACTCGAGGCAGTTTGGTCCCCTGGTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGAAGGAGGGGGCAGGAGACTCGAGGCAGTTTGGTCCCCTGGTG  948

seq1  AGTGCACATGGACTGGGGAAGCCAGACTACCCAGGGATTTCATACTACAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACATGGACTGGGGAAGCCAGACTACCCAGGGATTTCATACTACAG  998

seq1  TGTTATGGAAGGTGAAGTCTGCAGGTATAATGTGAAGAAGCAGGAGCCTC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGAAGGTGAAGTCTGCAGGTATAATGTGAAGAAGCAGGAGCCTC  1048

seq1  CTTCTCCTCCAGGAGAATTC  1057
      ||||||||||||||||||||
seq2  CTTCTCCTCCAGGAGAATTC  1068