BAC Information

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BAC

Clone NameB6Ng01-097A12
Chromosome9 (Build37)
Map Location 20,333,906 - 20,497,461
singlet/doubletdoublet
Overlap gene7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Upstream geneOlfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik
Downstream geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097A12.bB6Ng01-097A12.g
ACCDH907512DH907513
length5281,024
definitionDH907512|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A12, 5' end.DH907513|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,496,928 - 20,497,461)(20,333,906 - 20,334,911)
sequence
agttagtagtgacggtggctcagttgtgatcagtgtgctggggttatgta
agacattaacaattcaagaaagggagcagggaccaggcgggtgctccctg
gtctgtcttgtggaattttcctgtaaacctaaacttacttcaaagaagac
gtttattagaaaagaatcagcagggcgctcacaagcattctggaagctgt
tgggttttgtgtgtgataagagcctggggcccagtggaccgcatgctcag
cactgtgattggctcagagtggatagtaattgatgacgtgcccgaagcac
atctgtgacacccacattagttcagatgtggtacaaggcagccatctccc
aagttcacacactagtgaggtggtggagccggcatatgtgctaatagtgt
gcgtggaagtcagaggtcaacgacaacgccaaggatcttctctgtttatc
cactgcctttgttttttttttcattttatttatttgtgtctgtgtatata
tatgtgtgtgagtgtgtgtatgtatgtg
gaattcacatgctgaaccacaagcacaaaactaactcaaaatggctaaaa
tctttcaacttttaaatcctgcctccagtgacacacttcctccctctatc
agggcacacctcctaaatgtccccaaacagcatcaccaacagggaccaag
taagtattcaaatatgggactttctcattcataagtgactttctcattca
actcccctacaatatattaaaaggagatttttattatgttggcttacagg
atccagtttgggtagtccaacaatgtgttgtgctagaacggccaagaatc
ctgtggttaatctgtccacaaggctggatatttcagctgtctcgattcag
cactggagtcctgaaagatgcctggggagctgctaatcttcaatctgtta
gaatcccaaagaaattgactctaacactggttacaaaatgccttggtaac
agaactagcaagagtgagtgcaagcaggcaaaaagcagttcccgccttcc
atatcctggtatctgggctgccatggtcagcctaagactgctaaagactc
tgaaacagaatcctcctaggaagcgactggcctcctaatcctgggacccc
tgggtcctccaggccctccagctgcaccaccatttggtgtctttccccca
cccaggctccagcccaggttgtttgttttgttttttttttttcctttaat
ttctaaattatacatttatttggaggtgggtagagggaagaggtgtgtag
acctactgaggcctgggtgtgaaggtcagagaacgacttcaggaatcagg
tctctccttctttatttaggtccgagggactgaactcatattctgagatt
ttgtggcaagaatcctttaccatctactttggttcttctggggctcgaac
ccaggatcttctaaaagttggtggcaagccttctttaccagctgagcaat
ttcactgtctttgtatctgttcagaggactattactatcatgaaccccaa
atgaatttgattaactttgagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20496928_20497461
seq2: B6Ng01-097A12.b_48_581 (reverse)

seq1  CACATACATACACACACTCACACACATATATATACACAGACACAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATACACACACTCACACACATATATATACACAGACACAAATAAA  50

seq1  TAAAATGAAAAAAAAAACAAAGGCAGTGGATAAACAGAGAAGATCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAAAAAAAAAACAAAGGCAGTGGATAAACAGAGAAGATCCTTGG  100

seq1  CGTTGTCGTTGACCTCTGACTTCCACGCACACTATTAGCACATATGCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTCGTTGACCTCTGACTTCCACGCACACTATTAGCACATATGCCGG  150

seq1  CTCCACCACCTCACTAGTGTGTGAACTTGGGAGATGGCTGCCTTGTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCACCTCACTAGTGTGTGAACTTGGGAGATGGCTGCCTTGTACCA  200

seq1  CATCTGAACTAATGTGGGTGTCACAGATGTGCTTCGGGCACGTCATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAACTAATGTGGGTGTCACAGATGTGCTTCGGGCACGTCATCAAT  250

seq1  TACTATCCACTCTGAGCCAATCACAGTGCTGAGCATGCGGTCCACTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCCACTCTGAGCCAATCACAGTGCTGAGCATGCGGTCCACTGGGC  300

seq1  CCCAGGCTCTTATCACACACAAAACCCAACAGCTTCCAGAATGCTTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCTTATCACACACAAAACCCAACAGCTTCCAGAATGCTTGTGA  350

seq1  GCGCCCTGCTGATTCTTTTCTAATAAACGTCTTCTTTGAAGTAAGTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCTGCTGATTCTTTTCTAATAAACGTCTTCTTTGAAGTAAGTTTAG  400

seq1  GTTTACAGGAAAATTCCACAAGACAGACCAGGGAGCACCCGCCTGGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGGAAAATTCCACAAGACAGACCAGGGAGCACCCGCCTGGTCCC  450

seq1  TGCTCCCTTTCTTGAATTGTTAATGTCTTACATAACCCCAGCACACTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTTTCTTGAATTGTTAATGTCTTACATAACCCCAGCACACTGAT  500

seq1  CACAACTGAGCCACCGTCACTACTAACTGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  CACAACTGAGCCACCGTCACTACTAACTGAATTC  534

seq1: chr9_20333906_20334911
seq2: B6Ng01-097A12.g_93_1091

seq1  ACAAAACTAACTCAAAATGGCTAAAATCTTTCAACTTTTAAATCCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTAACTCAAAATGGCTAAAATCTTTCAACTTTTAAATCCTGCCT  50

seq1  CCAGTGACACACTTCCTCCCTCTATCAGGGCACACCTCCTAAATGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACACACTTCCTCCCTCTATCAGGGCACACCTCCTAAATGTCCCC  100

seq1  AAACAGCATCACCAACAGGGACCAAGTAAGTATTCAAATATGGGACTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCATCACCAACAGGGACCAAGTAAGTATTCAAATATGGGACTTTC  150

seq1  TCATTCATAAGTGACTTTCTCATTCAACTCCCCTACAATATATTAAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATAAGTGACTTTCTCATTCAACTCCCCTACAATATATTAAAAGG  200

seq1  AGATTTTTATTATGTTGGCTTACAGGATCCAGTTTGGGTAGTCCAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTATTATGTTGGCTTACAGGATCCAGTTTGGGTAGTCCAACAAT  250

seq1  GTGTTGTGCTAGAACGGCCAAGAATCCTGTGGTTAATCTGTCCACAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGCTAGAACGGCCAAGAATCCTGTGGTTAATCTGTCCACAAGGC  300

seq1  TGGATATTTCAGCTGTCTCGATTCAGCACTGGAGTCCTGAAAGATGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTTCAGCTGTCTCGATTCAGCACTGGAGTCCTGAAAGATGCCTG  350

seq1  GGGAGCTGCTAATCTTCAATCTGTTAGAATCCCAAAGAAATTGACTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGCTAATCTTCAATCTGTTAGAATCCCAAAGAAATTGACTCTAA  400

seq1  CACTGGTTACAAAATGCCTTGGTAACAGAACTAGCAAGAGTGAGTGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTACAAAATGCCTTGGTAACAGAACTAGCAAGAGTGAGTGCAAG  450

seq1  CAGGCAAAAAGCAGTTCCCGCCTTCCATATCCTGGTATCTGGGCTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAAAGCAGTTCCCGCCTTCCATATCCTGGTATCTGGGCTGCCAT  500

seq1  GGTCAGCCTAAGACTGCTAAAGACTCTGAAACAGAATCCTCCTAGGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCCTAAGACTGCTAAAGACTCTGAAACAGAATCCTCCTAGGAAGC  550

seq1  GACTGGCCTCCTAATCCTGGGACCCCTGGGTCCTCCAGGCCCTCCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCCTCCTAATCCTGGGACCCCTGGGTCCTCCAGGCCCTCCAGCTG  600

seq1  CACCACCATTTGGTGTCTTTCCCCCACCCAGGCTCCAGCCCAGGTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCATTTGGTGTCTTTCCCCCACCCAGGCTCCAGCCCAGGTTGTTT  650

seq1  GTTTTGTTTTTTTTTTTTCCTTTAATTTCTAAATTATACATTTATTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTTTTTTTCCTTTAATTTCTAAATTATACATTTATTTGGA  700

seq1  GGTGGGTAGAGGGAAGAGGTGTGTAGACCTACTGAGGCCTGGGTGTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTAGAGGGAAGAGGTGTGTAGACCTACTGAGGCCTGGGTGTGAAG  750

seq1  GTCAGAGAACGACTTTCAGGAATCAGGTCTCTCCTTCTTTATTTAGGTCC  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAACGAC-TTCAGGAATCAGGTCTCTCCTTCTTTATTTAGGTCC  799

seq1  GAGGGACTGAACTCATATTCTGAGATTTTGTGGCAAGAATCCTTTTACCA  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGGGACTGAACTCATATTCTGAGATTTTGTGGCAAGAATCC-TTTACCA  848

seq1  TCTACATTGGTTCCTCTGGGGCTCGAACCCAGGATCTTCTAAAAGTTTGT  900
      ||||| ||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TCTACTTTGGTTCTTCTGGGGCTCGAACCCAGGATCTTCTAAAAGTTGGT  898

seq1  GGCAAGCCCTCTTTTACCAGCTGAGCCATTTCACTGGCCTTTGTATCAGT  950
      |||||||| || |||||||||||||| |||||||| | ||||||||| | 
seq2  GGCAAGCCTTC-TTTACCAGCTGAGCAATTTCACT-GTCTTTGTATCTG-  945

seq1  TTCAGAGGACTATAACTATCATGAACACCAAAAGTGAA-TTGATTAAATT  999
      ||||||||||||| |||||||||||| |||||  |||| |||||| || |
seq2  TTCAGAGGACTATTACTATCATGAACCCCAAA--TGAATTTGATT-AACT  992

seq1  TTGAGCT  1006
      |||||||
seq2  TTGAGCT  999