BAC Information

Click to search

BAC

Clone NameB6Ng01-097F14
Chromosome9 (Build37)
Map Location 75,675,923 - 75,911,220
singlet/doubletdoublet
Overlap geneBmp5, EG620071, Hmgcll1
Upstream geneOnecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107
Downstream geneGfral, Hcrtr2, C530008M07Rik, Tinag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097F14.bB6Ng01-097F14.g
ACCDH907749DH907750
length6011,177
definitionDH907749|Mus musculus domesticus DNA, BAC clone: B6Ng01-097F14, 5' end.DH907750|Mus musculus domesticus DNA, BAC clone: B6Ng01-097F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,910,620 - 75,911,220)(75,675,923 - 75,677,110)
sequence
gaattcacatagcaaaatttcttccatttaatttcaataaccatgtagta
tcatttaccttatatcaattatcattcactcctacccagaggacaaatac
tgacaacatggatgtatctaacatgtatgaaaacaaatacattcctgtaa
attaataagcaaaaccaatatcatcatttagaccatgcttctaaggacaa
tataccatttgatctcttcatatcaatctttttacagaggatcattaatg
tgttacagcagtaatgccagtttagaagagaaaaaattaagactatttca
atatggttattcttggcataacaccagaaaataagaaatatggccttagt
taatttggccaggatcccttttgtgaaatgacacaggttatgtaaggtaa
accataagcaaagtggacatactttgattggactcatcctgagatacttt
ctgttgtctggacacataatgatgtctcttaagccaacaatttgaaagtg
ccccaccccctctccctttctgtccttctccttctccgtctccttctcct
tctctttctttctctctctctctctctctctctctctctctctctctctc
t
gaattccggatttataaggacaagggaaaccatcgatttgaaaatgaaac
aattaagatcagcatatatcagatcatcaaggaatacacaaacaggtatc
aactttatattgactatcctaacaaggactgacttttagtaaaaaagcca
ttcatagcttatgtaatttgcaatacattttcttgaatgaaaggagattc
tgagccaggtaaagaacactaaacagtaagaataaggagctggtgaaatg
gttcagcagttgagagctctcagtcttgtagaggaccatagtttggctcc
tagcacctatttcaggcagcccacaaccacctttaaccctaactgaattt
ctcttctgactgatatcctttaacacctgatatgcatgcacacacatata
tactgaataaaaatgtcaaaatatgtctaaaaatgaaaagaaatgaataa
gtaaatattaagaatccctctagccgggcatggtgtcgcacaccttcatc
ccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcc
tggtctacaaagtgagatccaggacagccagggctatacagagaaaccct
gtctcgaaaaaaatatccctccaacattttacagaattttctactattga
ccaatccatgtatgaaatggcatcatgtctctctctctctctgttctttc
ttcatctttgtctcattttgtcaatttgcctttcagtcaagaaaatttgt
gttttattatacctacacaaaatttcatataatattatttaaatagatca
gagttctgtaaaccagaaaggacttgtttgctaggcaaagggtgggatat
tatacaattagttatgtgtatttttgaataaagatagttctacttatatt
gattctgacagataaccagtgcaaatccttttctaaagatatttggaaac
tgtatgatatagatgatagatcaaaaataagtgcctgaaaaatcactgat
aatggatgatgcaaatgaagaagcaagtatgaacttattggtcattaact
tgtttcctgactttattctacaccgagaatgttttagtaagtctctttgt
ggtagattagctatcttttttattagaattttctcggtgcattcaatgct
atccccttcctagttcctctcggaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_75910620_75911220
seq2: B6Ng01-097F14.b_46_646 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAG  50

seq1  AAGGAGAAGGAGACGGAGAAGGAGAAGGACAGAAAGGGAGAGGGGGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGGAGACGGAGAAGGAGAAGGACAGAAAGGGAGAGGGGGTGGG  100

seq1  GCACTTTCAAATTGTTGGCTTAAGAGACATCATTATGTGTCCAGACAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTCAAATTGTTGGCTTAAGAGACATCATTATGTGTCCAGACAACA  150

seq1  GAAAGTATCTCAGGATGAGTCCAATCAAAGTATGTCCACTTTGCTTATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATCTCAGGATGAGTCCAATCAAAGTATGTCCACTTTGCTTATGG  200

seq1  TTTACCTTACATAACCTGTGTCATTTCACAAAAGGGATCCTGGCCAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTACATAACCTGTGTCATTTCACAAAAGGGATCCTGGCCAAATT  250

seq1  AACTAAGGCCATATTTCTTATTTTCTGGTGTTATGCCAAGAATAACCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGGCCATATTTCTTATTTTCTGGTGTTATGCCAAGAATAACCATA  300

seq1  TTGAAATAGTCTTAATTTTTTCTCTTCTAAACTGGCATTACTGCTGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAGTCTTAATTTTTTCTCTTCTAAACTGGCATTACTGCTGTAAC  350

seq1  ACATTAATGATCCTCTGTAAAAAGATTGATATGAAGAGATCAAATGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATGATCCTCTGTAAAAAGATTGATATGAAGAGATCAAATGGTAT  400

seq1  ATTGTCCTTAGAAGCATGGTCTAAATGATGATATTGGTTTTGCTTATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTTAGAAGCATGGTCTAAATGATGATATTGGTTTTGCTTATTAA  450

seq1  TTTACAGGAATGTATTTGTTTTCATACATGTTAGATACATCCATGTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGAATGTATTTGTTTTCATACATGTTAGATACATCCATGTTGTC  500

seq1  AGTATTTGTCCTCTGGGTAGGAGTGAATGATAATTGATATAAGGTAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGTCCTCTGGGTAGGAGTGAATGATAATTGATATAAGGTAAATG  550

seq1  ATACTACATGGTTATTGAAATTAAATGGAAGAAATTTTGCTATGTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACATGGTTATTGAAATTAAATGGAAGAAATTTTGCTATGTGAATT  600

seq1  C  601
      |
seq2  C  601

seq1: chr9_75675923_75677110
seq2: B6Ng01-097F14.g_69_1245

seq1  GAATTCCGGATTTATAAGGACAAGGGAAACCATCGATTTGAAAATGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGATTTATAAGGACAAGGGAAACCATCGATTTGAAAATGAAAC  50

seq1  AATTAAGATCAGCATATATCAGATCATCAAGGAATACACAAACAGGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATCAGCATATATCAGATCATCAAGGAATACACAAACAGGTATC  100

seq1  AACTTTATATTGACTATCCTAACAAGGACTGACTTTTAGTAAAAAAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATATTGACTATCCTAACAAGGACTGACTTTTAGTAAAAAAGCCA  150

seq1  TTCATAGCTTATGTAATTTGCAATACATTTTCTTGAATGAAAGGAGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCTTATGTAATTTGCAATACATTTTCTTGAATGAAAGGAGATTC  200

seq1  TGAGCCAGGTAAAGAACACTAAACAGTAAGAATAAGGAGCTGGTGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGGTAAAGAACACTAAACAGTAAGAATAAGGAGCTGGTGAAATG  250

seq1  GTTCAGCAGTTGAGAGCTCTCAGTCTTGTAGAGGACCATAGTTTGGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCAGTTGAGAGCTCTCAGTCTTGTAGAGGACCATAGTTTGGCTCC  300

seq1  TAGCACCTATTTCAGGCAGCCCACAACCACCTTTAACCCTAACTGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCTATTTCAGGCAGCCCACAACCACCTTTAACCCTAACTGAATTT  350

seq1  CTCTTCTGACTGATATCCTTTAACACCTGATATGCATGCACACACATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGACTGATATCCTTTAACACCTGATATGCATGCACACACATATA  400

seq1  TACTGAATAAAAATGTCAAAATATGTCTAAAAATGAAAAGAAATGAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATAAAAATGTCAAAATATGTCTAAAAATGAAAAGAAATGAATAA  450

seq1  GTAAATATTAAGAATCCCTCTAGCCGGGCATGGTGTCGCACACCTTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATTAAGAATCCCTCTAGCCGGGCATGGTGTCGCACACCTTCATC  500

seq1  CCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCC  550

seq1  TGGTCTACAAAGTGAGATCCAGGACAGCCAGGGCTATACAGAGAAACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAAAGTGAGATCCAGGACAGCCAGGGCTATACAGAGAAACCCT  600

seq1  GTCTCGAAAAAAATATCCCTCCAACATTTTACAGAATTTTCTACTATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAAAAAAATATCCCTCCAACATTTTACAGAATTTTCTACTATTGA  650

seq1  CCAATCCATGTATGAAATGGCATCATGTCTCTCTCTCTCTCTGTTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCATGTATGAAATGGCATCATGTCTCTCTCTCTCTCTGTTCTTTC  700

seq1  TTCATCTTTGTCTCATTTTGTCAATTTGCCTTTCAGTCAAGAAAATTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTTGTCTCATTTTGTCAATTTGCCTTTCAGTCAAGAAAATTTGT  750

seq1  GTTTTATTATACCTACACAAAATTTCATATAATATTATTTAAATAGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTATACCTACACAAAATTTCATATAATATTATTTAAATAGATCA  800

seq1  GAGTTCTGTAAACCAGAAAGGACTTGTTTGCTAGGCAAAGGGTGGGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGTAAACCAGAAAGGACTTGTTTGCTAGGCAAAGGGTGGGATAT  850

seq1  TATACAATTAGTTATGTGTA-TTTTGAATAAAGATAGTTCTACTTATATT  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TATACAATTAGTTATGTGTATTTTTGAATAAAGATAGTTCTACTTATATT  900

seq1  GATTCTGACAGATAACCAGTGCACATCC-TTTCTAAAGATATTTGGAAAC  948
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  GATTCTGACAGATAACCAGTGCAAATCCTTTTCTAAAGATATTTGGAAAC  950

seq1  TGTATGATAATAGATGATAGATCAAAATATTAAGTGCCTGAAAATATCAC  998
      |||||||| |||||||||||||||||  | |||||||||||||| |||||
seq2  TGTATGAT-ATAGATGATAGATCAAA--AATAAGTGCCTGAAAA-ATCAC  996

seq1  TGATAATGGATTGATGCAAATGAAGAAGCAAGTATGAAC-TATAGTTCAT  1047
      |||||||||| |||||||||||||||||||||||||||| ||| | ||||
seq2  TGATAATGGA-TGATGCAAATGAAGAAGCAAGTATGAACTTATTGGTCAT  1045

seq1  AAACATGTTCTCTGACCTTTAATCTAACACAGA-AATGTTTTAGTTAGTC  1096
       ||| ||||  |||| ||||| ||| |||| || ||||||||||| ||||
seq2  TAACTTGTTTCCTGA-CTTTATTCT-ACACCGAGAATGTTTTAGTAAGTC  1093

seq1  ATCTTTGTGAT-GATTAGCTATCTTTTTTTATTAGATATTTTCTTCGTTT  1145
       |||||||| | ||||||||||| |||||||||||| |||||||  |  |
seq2  -TCTTTGTGGTAGATTAGCTATC-TTTTTTATTAGA-ATTTTCTCGG--T  1138

seq1  GCATTTCAAATGCTATCCCCTTTCCTAGTTTCCTCTCTGAAAG  1188
      |||||   |||||||||||| ||||||| |||||||| |||||
seq2  GCATT--CAATGCTATCCCC-TTCCTAG-TTCCTCTCGGAAAG  1177