BAC Information

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BAC

Clone NameB6Ng01-097G03
Chromosome9 (Build37)
Map Location 10,276,642 - 10,465,476
singlet/doubletdoublet
Overlap geneLOC665154, LOC100039970
Upstream geneCntn5
Downstream geneLOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097G03.bB6Ng01-097G03.g
ACCDH907773DH907774
length1,2521,167
definitionDH907773|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G03, 5' end.DH907774|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,464,226 - 10,465,476)(10,276,642 - 10,277,802)
sequence
gaattcaaggcccctacctaaacataataaaagaaatatacagcaaacca
gaagccaacattaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagaaaaggctgcccactttctccctatctattcaatatag
tacttgaagtcctagccatagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactgtttgcagatgatat
gatagtatatataagtgaaactaaaatttccacaagagaactcctaaacc
tgataaatagctacagcgcagtagctggatataaaattaactcaaacaaa
tcagtggcttttctctacacaaaggataaacaggatgagaaagaaattag
ggaaacaacacccttcacagtaatttcttttttaagacttctttttacaa
gtgtttggtatgcatgcacatatgtgcaccatgtgcatacagtgcctaca
aaatccagaagagggcagcaggtcctctggaactggagttacagtagatt
gtgagctggaaatcaagcttgtgacctctggaaaagctcttaatggtgga
gcctcctctctagccaacattatagtgattttgaccagcaaatggatcat
ggcatgcagcttctgctcatctaacatggataatgtactttgagcctgac
tgttggtaactcagaacaatatttttatatctgaacatttagctttgttg
taatactttccctcattcctattctagatgtttaaaaacatcaacagcaa
aattatttaaatattctagtcatgatttatttttctcttgccatttaagt
taaatataaatatgttttctattttagacttcaaagtcatgactgaatga
gataatctatttgaatcatttctacataacaactcaaagccaggaaatag
ctcagtcagtgaaatgcctggcttacaatcatgagagtctgggtttcaat
cttcaggattaacataaagaagatctggggtcctcgtgcagttcaaattc
ccagcttctgggggtggcagaaggccgaagatctcctgggagcttgctgg
gtcagaaaagcttgattcctcccagttcttgattgaaactgaaacaaaca
ggaaccacactggaaatcacacccgggaactcaacctacctcccaacttg
gccaaggcacccttaacacacagttacacaattaccattaattcccatcg
ga
gaattcctttcttgaaaaaaaaatcgcattgagcaatttcctgaaaaatc
gtgccatactttaacttttttccctttttattttgaaatatattttcaaa
actttaaagatgtaaaatagattcttttcataccatatactctgattata
ttttctaatccctgagctccacccagctcctcctcatcttccctcccaca
caaatccacattctttctttctctcattagaaaacaaatcagcatctaaa
tattagtgagggaataattgaaaataaaaacaaacaagatggaataggat
gaaacaaacagacagaagcaaaggagccaaataaaaagcacaagaaacat
ataaacacagacacaaaagatgcattgaatactgaatggtattttaggaa
tatgtgtatggttattccaagacaattaaagaactcattttctacagttt
ttaaaaatgatgtgaagggtgtattttaatgaagtaattattatttgtgg
tcttctttggtgaatttcacatatcagaaaattaaacatgaaaatatatc
agatttttttcatcctttaatttctttacaactgagatgtatgaaataca
tttccttgttgcattcccaagctgggaggatgacctcaatgaagcaagga
tgaagtttcttgccattgagaggcagcctatctgtccaggactcagttct
gttcctgccactgacaagtagattggtcatgagtctctttactgtatcaa
tgattgagtttcttcatgaaaaattatcattcattttagatttttcatag
ttgatttgagttgtaattgatttcatatttgtaagtgttcaatgatacca
gagacacagtaagtgctatatacatagctataaagtctattgctctacca
aacaaaacagagaacaaatcatgacatttttcaggaaaaatttcacatac
tgagtatgaaaaatgtcagatcgtgcaataataatagcccatcattctta
ttatattgaaatgcatacactcatggaatcatgcctgtgcctcaatgaac
agggccattttccactaatattgaacattacagcaactctgaagatggtt
ttattaattttaggataaacaaaaaaagaattagtgggaaattaagggga
ttttctcaggaaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_10464226_10465476
seq2: B6Ng01-097G03.b_44_1295 (reverse)

seq1  TCCGATGGGAATATATAATGGTGATATGTGTGTACATGTGTGTGTAAGGG  50
      ||||||||||||   ||||||| ||   ||||||  ||||||| ||||||
seq2  TCCGATGGGAAT---TAATGGTAAT---TGTGTAACTGTGTGT-TAAGGG  43

seq1  TGCATATG-CAAGTGTGGGAGGTTAGTGTGAAGTCCAGGGTGTGATTTCA  99
      ||| |  | ||||| ||||||| |||  |||  ||| |||||||||||| 
seq2  TGCCTTGGCCAAGT-TGGGAGG-TAGGTTGAGTTCCCGGGTGTGATTTCC  91

seq1  AGTGTGGTTCCTTGTTTGTTTCAGTTTC-ATC-AGAACTGAGAGGAATCA  147
      ||||||||||| |||||||||||||||| ||| ||||||| |||||||||
seq2  AGTGTGGTTCC-TGTTTGTTTCAGTTTCAATCAAGAACTGGGAGGAATCA  140

seq1  AGCTGTTCTGA-CCAGCAAGCTCC--AGAGATCTTCCGCC-TCTGCCA-C  192
      |||| |||||| ||||||||||||   ||||||||| ||| ||||||| |
seq2  AGCTTTTCTGACCCAGCAAGCTCCCAGGAGATCTTCGGCCTTCTGCCACC  190

seq1  CCCAG-AGCTGGG-ATTTGAACTGCACGAGGACCCCAGATCTTCTTTATG  240
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCTGGGAATTTGAACTGCACGAGGACCCCAGATCTTCTTTATG  240

seq1  TTAATTCTG-AGATTGAAACCCAGACTCTCATGATTGTAAGCCAGGCATT  289
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTGAAGATTGAAACCCAGACTCTCATGATTGTAAGCCAGGCATT  290

seq1  TCACTGACTGAGCTATTTCCTGGCTTTGAGTTGTTATGTAGAAATGATTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGACTGAGCTATTTCCTGGCTTTGAGTTGTTATGTAGAAATGATTC  340

seq1  AAATAGATTATCTCATTCAGTCATGACTTTGAAGTCTAAAATAGAAAACA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTATCTCATTCAGTCATGACTTTGAAGTCTAAAATAGAAAACA  390

seq1  TATTTATATTTAACTTAAATGGCAAGAGAAAAATAAATCATGACTAGAAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATTTAACTTAAATGGCAAGAGAAAAATAAATCATGACTAGAAT  440

seq1  ATTTAAATAATTTTGCTGTTGATGTTTTTAAACATCTAGAATAGGAATGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATAATTTTGCTGTTGATGTTTTTAAACATCTAGAATAGGAATGA  490

seq1  GGGAAAGTATTACAACAAAGCTAAATGTTCAGATATAAAAATATTGTTCT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTATTACAACAAAGCTAAATGTTCAGATATAAAAATATTGTTCT  540

seq1  GAGTTACCAACAGTCAGGCTCAAAGTACATTATCCATGTTAGATGAGCAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACCAACAGTCAGGCTCAAAGTACATTATCCATGTTAGATGAGCAG  590

seq1  AAGCTGCATGCCATGATCCATTTGCTGGTCAAAATCACTATAATGTTGGC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCATGCCATGATCCATTTGCTGGTCAAAATCACTATAATGTTGGC  640

seq1  TAGAGAGGAGGCTCCACCATTAAGAGCTTTTCCAGAGGTCACAAGCTTGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGAGGCTCCACCATTAAGAGCTTTTCCAGAGGTCACAAGCTTGA  690

seq1  TTTCCAGCTCACAATCTACTGTAACTCCAGTTCCAGAGGACCTGCTGCCC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTCACAATCTACTGTAACTCCAGTTCCAGAGGACCTGCTGCCC  740

seq1  TCTTCTGGATTTTGTAGGCACTGTATGCACATGGTGCACATATGTGCATG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGATTTTGTAGGCACTGTATGCACATGGTGCACATATGTGCATG  790

seq1  CATACCAAACACTTGTAAAAAGAAGTCTTAAAAAAGAAATTACTGTGAAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAAACACTTGTAAAAAGAAGTCTTAAAAAAGAAATTACTGTGAAG  840

seq1  GGTGTTGTTTCCCTAATTTCTTTCTCATCCTGTTTATCCTTTGTGTAGAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGTTTCCCTAATTTCTTTCTCATCCTGTTTATCCTTTGTGTAGAG  890

seq1  AAAAGCCACTGATTTGTTTGAGTTAATTTTATATCCAGCTACTGCGCTGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCACTGATTTGTTTGAGTTAATTTTATATCCAGCTACTGCGCTGT  940

seq1  AGCTATTTATCAGGTTTAGGAGTTCTCTTGTGGAAATTTTAGTTTCACTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTATCAGGTTTAGGAGTTCTCTTGTGGAAATTTTAGTTTCACTT  990

seq1  ATATATACTATCATATCATCTGCAAACAGTGATATTTTGACTTCTTCCTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTATCATATCATCTGCAAACAGTGATATTTTGACTTCTTCCTT  1040

seq1  TCCAATTTGTATCCCCTTGATCTCCTTTTGTTGTCGAATTGCTATGGCTA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTGTATCCCCTTGATCTCCTTTTGTTGTCGAATTGCTATGGCTA  1090

seq1  GGACTTCAAGTACTATATTGAATAGATAGGGAGAAAGTGGGCAGCCTTTT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCAAGTACTATATTGAATAGATAGGGAGAAAGTGGGCAGCCTTTT  1140

seq1  CTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTTCTCTCCATTTACTTT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTTCTCTCCATTTACTTT  1190

seq1  AATGTTGGCTTCTGGTTTGCTGTATATTTCTTTTATTATGTTTAGGTAGG  1239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGCTTCTGGTTTGCTGTATATTTCTTTTATTATGTTTAGGTAGG  1240

seq1  GGCCTTGAATTC  1251
      ||||||||||||
seq2  GGCCTTGAATTC  1252

seq1: chr9_10276642_10277802
seq2: B6Ng01-097G03.g_67_1233

seq1  GAATTCCTTTCTTGAAAAAAAAATCGCATTGAGCAATTTCCTGAAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTTGAAAAAAAAATCGCATTGAGCAATTTCCTGAAAAATC  50

seq1  GTGCCATACTTTAACTTTTTTCCCTTTTTATTTTGAAATATATTTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATACTTTAACTTTTTTCCCTTTTTATTTTGAAATATATTTTCAAA  100

seq1  ACTTTAAAGATGTAAAATAGATTCTTTTCATACCATATACTCTGATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGATGTAAAATAGATTCTTTTCATACCATATACTCTGATTATA  150

seq1  TTTTCTAATCCCTGAGCTCCACCCAGCTCCTCCTCATCTTCCCTCCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATCCCTGAGCTCCACCCAGCTCCTCCTCATCTTCCCTCCCACA  200

seq1  CAAATCCACATTCTTTCTTTCTCTCATTAGAAAACAAATCAGCATCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCACATTCTTTCTTTCTCTCATTAGAAAACAAATCAGCATCTAAA  250

seq1  TATTAGTGAGGGAATAATTGAAAATAAAAACAAACAAGATGGAATAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTGAGGGAATAATTGAAAATAAAAACAAACAAGATGGAATAGGAT  300

seq1  GAAACAAACAGACAGAAGCAAAGGAGCCAAATAAAAAGCACAAGAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACAGACAGAAGCAAAGGAGCCAAATAAAAAGCACAAGAAACAT  350

seq1  ATAAACACAGACACAAAAGATGCATTGAATACTGAATGGTATTTTAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAGACACAAAAGATGCATTGAATACTGAATGGTATTTTAGGAA  400

seq1  TATGTGTATGGTTATTCCAAGACAATTAAAGAACTCATTTTCTACAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATGGTTATTCCAAGACAATTAAAGAACTCATTTTCTACAGTTT  450

seq1  TTAAAAATGATGTGAAGGGTGTATTTTAATGAAGTAATTATTATTTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGATGTGAAGGGTGTATTTTAATGAAGTAATTATTATTTGTGG  500

seq1  TCTTCTTTGGTGAATTTCACATATCAGAAAATTAAACATGAAAATATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGGTGAATTTCACATATCAGAAAATTAAACATGAAAATATATC  550

seq1  AGATTTTTTTCATCCTTTAATTTCTTTACAACTGAGATGTATGAAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTCATCCTTTAATTTCTTTACAACTGAGATGTATGAAATACA  600

seq1  TTTCCTTGTTGCATTCCCAAGCTGGGAGGATGACCTCAATGAAGCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTTGCATTCCCAAGCTGGGAGGATGACCTCAATGAAGCAAGGA  650

seq1  TGAAGTTTCTTGCCATTGAGAGGCAGCCTATCTGTCCAGGACTCAGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTCTTGCCATTGAGAGGCAGCCTATCTGTCCAGGACTCAGTTCT  700

seq1  GTTCCTGCCACTGACAAGTAGATTGGTCATGAGTCTC-TTACTGTATCAA  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTCCTGCCACTGACAAGTAGATTGGTCATGAGTCTCTTTACTGTATCAA  750

seq1  TGATTGAGTTTCTTCATGAAAAATTATCATTCATTTTAGATTTTTCATAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAGTTTCTTCATGAAAAATTATCATTCATTTTAGATTTTTCATAG  800

seq1  TTGATTTGAGTTGTAATTGATTTCATATTTGTAAGTGTTCAATGATACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGAGTTGTAATTGATTTCATATTTGTAAGTGTTCAATGATACCA  850

seq1  GAGACACAGTAAGTGCTATATACATAGCTATAAAGTCTATTGCTCTACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACAGTAAGTGCTATATACATAGCTATAAAGTCTATTGCTCTACCA  900

seq1  AACAAAACAGAGAACAAAATCATGACATTTTTCAGGAAAAA-TTCACATA  948
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  AACAAAACAGAGAAC-AAATCATGACATTTTTCAGGAAAAATTTCACATA  949

seq1  CTGAGTATGATAAATGTCAGATCGTGCAAATAAT-ATAGCCCATCATTCT  997
      |||||||||| |||||||||||||||| |||||| |||||||||||||||
seq2  CTGAGTATGAAAAATGTCAGATCGTGC-AATAATAATAGCCCATCATTCT  998

seq1  TATTATAATGAAATGCATACACTCATGGAATCATG-CTGTGCCTCAATGA  1046
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  TATTATATTGAAATGCATACACTCATGGAATCATGCCTGTGCCTCAATGA  1048

seq1  ACAGGGCCATTTT-CACATAT-TTGAACATTACAGCAACTCTGAAGAT-G  1093
      ||||||||||||| |||  || |||||||||||||||||||||||||| |
seq2  ACAGGGCCATTTTCCACTAATATTGAACATTACAGCAACTCTGAAGATGG  1098

seq1  TTTTATTAAATTTTAGGATAA--CAAAAAAGAGTTAGT-GGAAATAAAGG  1140
      ||||||| |||||||||||||   |||||||| ||||| |||||| ||||
seq2  TTTTATT-AATTTTAGGATAAACAAAAAAAGAATTAGTGGGAAATTAAGG  1147

seq1  GAATTTCTCCAGGAAATAATA  1161
      | ||||   ||||||| ||||
seq2  GGATTTTCTCAGGAAA-AATA  1167