BAC Information

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BAC

Clone NameB6Ng01-097J09
Chromosome9 (Build37)
Map Location 67,066,430 - 67,191,945
singlet/doubletdoublet
Overlap geneTln2
Upstream geneDapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
Downstream geneLOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097J09.bB6Ng01-097J09.g
ACCDH907923DH907924
length931736
definitionDH907923|Mus musculus domesticus DNA, BAC clone: B6Ng01-097J09, 5' end.DH907924|Mus musculus domesticus DNA, BAC clone: B6Ng01-097J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,191,021 - 67,191,945)(67,066,430 - 67,067,164)
sequence
gaattccaagaagctcctggcggccgcaaagctcttggctgactccactg
cccgcatggtggaagctgcgaaggtgggcattggtcctttggcctaaatt
gtgaacactatcggtgttagcatttaaagcttacctatgaaagtgaaaga
tggagtctggatttctcctcgttaagaacttgaatagctttgtgacacct
aaggtacttagggtaggggaggagttgttgaacacaagaaagagatgctg
acttagcgcagacaacaaagctattaactccagcatcatggattcgctca
ttgctacaacaagttgcctaaggaaaggacgagggatttattttggcttg
cagtttgagggcgcagtccttcatggtggcagagcagctgtagctggtca
catccaatccctggtcaggaagcagagaggtccatgctggtacttggctg
tctttccagttttaatttagtctaggaccctgcctgtggaatggggttgc
ccacacttacaggggaactttccacatggacaatcaaaattacgcatcgt
attttgtctcaaggggagaaagtgagcaccttctcccggtattaaccttt
cctgactttagagtcctgtgtatctgagtaaaactgacaagatgctaagg
acaggttcagctgaaaggccagggtatagggccttggacctgcacaaagt
gtttacagctggatgggtaccatgctgttctgccagccaagggcatcagc
ttcgccctttgaagttgggtaccagctgtttgtctcagacggcatttctc
ttcacagccttttagcaaactttccacccttggggtctttcttgtagaaa
cgaccctctgtggcctccccggcccctcccatcgtgctccatccaagggc
ttctttttcccaatggaacccttcactttac
gaattccatgttccaggccttgggccatgggccttgaaactactccaaac
tgcaattcactacatctgcattctttctcccttaggagccagaagacccc
tcagtgcctctggggacacaagcagcagcattaagtaatgcctgtagccc
agcatttccgctggtttatgaaatgaggagagatcagccagccacgagga
cattcacatacatggacacagcatgggctagcaagggacaggtgcgaagt
aggcccacgaccatggaggagagacctgagaacgacctcttcccaagttc
ctagtgcacatcaccccagacaggaggacactgtcccactgtcctgaaac
tcccctcatggccccttgccttcatttgttagaggtcttctcctgtgtcc
acttctgtgaaagttttaaaccaccctggggtagggacagacacttggta
tctgtcctgcccctggaatgtccaatgtggcaggggacaggtaggaggag
gggtgaggggctagctgcctggaagcatatcctacaggaagagggtgagc
cagctgcaggagagcctctttgtcctactgtgtgagatcaccgtcttgat
catgaactttggggtttggcttaatagttttgcatagtacccagcaaagg
cgtgaagtggcgcacacctttaatcccagcgcttgggagtcagaggcagg
cagatttctgagttcgaggccagcctggtctacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67191021_67191945
seq2: B6Ng01-097J09.b_44_974 (reverse)

seq1  GGAAAGTGAA-GGTTCCATTGGG-AAAAGAAGCCCTTGGATGGAGCACGA  48
      | |||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  GTAAAGTGAAGGGTTCCATTGGGAAAAAGAAGCCCTTGGATGGAGCACGA  50

seq1  TGGGAGGGGCCGGGGAGGCCACAG-GGGTCGTTTCTAC-AGAAAGACCCC  96
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  TGGGAGGGGCCGGGGAGGCCACAGAGGGTCGTTTCTACAAGAAAGACCCC  100

seq1  AAGGGTGG-AAGTTTGCT-AAAGGCTGTGAAGAGAAATGCCGTCTGAGAC  144
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  AAGGGTGGAAAGTTTGCTAAAAGGCTGTGAAGAGAAATGCCGTCTGAGAC  150

seq1  AAACAGCTGGTACCCAACTTCAAAGGGCGAAGCTGATGCCCTTGGCTGGC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGGTACCCAACTTCAAAGGGCGAAGCTGATGCCCTTGGCTGGC  200

seq1  AGAACAGCATGGTACCCATCCAGCTGTAAACACTTTGTGCAGGTCCAAGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCATGGTACCCATCCAGCTGTAAACACTTTGTGCAGGTCCAAGG  250

seq1  CCCTATACCCTGGCCTTTCAGCTGAACCTGTCCTTAGCATCTTGTCAGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATACCCTGGCCTTTCAGCTGAACCTGTCCTTAGCATCTTGTCAGTT  300

seq1  TTACTCAGATACACAGGACTCTAAAGTCAGGAAAGGTTAATACCGGGAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGATACACAGGACTCTAAAGTCAGGAAAGGTTAATACCGGGAGA  350

seq1  AGGTGCTCACTTTCTCCCCTTGAGACAAAATACGATGCGTAATTTTGATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCACTTTCTCCCCTTGAGACAAAATACGATGCGTAATTTTGATT  400

seq1  GTCCATGTGGAAAGTTCCCCTGTAAGTGTGGGCAACCCCATTCCACAGGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTGGAAAGTTCCCCTGTAAGTGTGGGCAACCCCATTCCACAGGC  450

seq1  AGGGTCCTAGACTAAATTAAAACTGGAAAGACAGCCAAGTACCAGCATGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTAGACTAAATTAAAACTGGAAAGACAGCCAAGTACCAGCATGG  500

seq1  ACCTCTCTGCTTCCTGACCAGGGATTGGATGTGACCAGCTACAGCTGCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTGCTTCCTGACCAGGGATTGGATGTGACCAGCTACAGCTGCTC  550

seq1  TGCCACCATGAAGGACTGCGCCCTCAAACTGCAAGCCAAAATAAATCCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCATGAAGGACTGCGCCCTCAAACTGCAAGCCAAAATAAATCCCT  600

seq1  CGTCCTTTCCTTAGGCAACTTGTTGTAGCAATGAGCGAATCCATGATGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTTCCTTAGGCAACTTGTTGTAGCAATGAGCGAATCCATGATGCT  650

seq1  GGAGTTAATAGCTTTGTTGTCTGCGCTAAGTCAGCATCTCTTTCTTGTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAATAGCTTTGTTGTCTGCGCTAAGTCAGCATCTCTTTCTTGTGT  700

seq1  TCAACAACTCCTCCCCTACCCTAAGTACCTTAGGTGTCACAAAGCTATTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAACTCCTCCCCTACCCTAAGTACCTTAGGTGTCACAAAGCTATTC  750

seq1  AAGTTCTTAACGAGGAGAAATCCAGACTCCATCTTTCACTTTCATAGGTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTAACGAGGAGAAATCCAGACTCCATCTTTCACTTTCATAGGTA  800

seq1  AGCTTTAAATGCTAACACCGATAGTGTTCACAATTTAGGCCAAAGGACCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAATGCTAACACCGATAGTGTTCACAATTTAGGCCAAAGGACCA  850

seq1  ATGCCCACCTTCGCAGCTTCCACCATGCGGGCAGTGGAGTCAGCCAAGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCACCTTCGCAGCTTCCACCATGCGGGCAGTGGAGTCAGCCAAGAG  900

seq1  CTTTGCGGCCGCCAGGAGCTTCTTGGAATTC  925
      |||||||||||||||||||||||||||||||
seq2  CTTTGCGGCCGCCAGGAGCTTCTTGGAATTC  931

seq1: chr9_67066430_67067164
seq2: B6Ng01-097J09.g_69_804

seq1  GAATTCCATGTTCCAGGCCTTGGGCCATGGGCCTTGAAACTACTCCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTCCAGGCCTTGGGCCATGGGCCTTGAAACTACTCCAAAC  50

seq1  TGCAATTCACTACATCTGCATTCTTTCTCCCTTAGGAGCCAGAAGACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCACTACATCTGCATTCTTTCTCCCTTAGGAGCCAGAAGACCCC  100

seq1  TCAGTGCCTCTGGGGACACAAGCAGCAGCATTAAGTAATGCCTGTAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCTCTGGGGACACAAGCAGCAGCATTAAGTAATGCCTGTAGCCC  150

seq1  AGCATTTCCGCTGGTTTATGAAATGAGGAGAGATCAGCCAGCCACGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCCGCTGGTTTATGAAATGAGGAGAGATCAGCCAGCCACGAGGA  200

seq1  CATTCACATACATGGACACAGCATGGGCTAGCAAGGGACAGGTGCGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACATACATGGACACAGCATGGGCTAGCAAGGGACAGGTGCGAAGT  250

seq1  AGGCCCACGACCATGGAGGAGAGACCTGAGAACGACCTCTTCCCAAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCACGACCATGGAGGAGAGACCTGAGAACGACCTCTTCCCAAGTTC  300

seq1  CTAGTGCACATCACCCCAGACAGGAGGACACTGTCCCACTGTCCTGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCACATCACCCCAGACAGGAGGACACTGTCCCACTGTCCTGAAAC  350

seq1  TCCCCTCATGGCCCCTTGCCTTCATTTGTTAGAGGTCTTCTCCTGTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCATGGCCCCTTGCCTTCATTTGTTAGAGGTCTTCTCCTGTGTCC  400

seq1  ACTTCTGTGAAAGTTTTAAACCACCCTGGGGTAGGGACAGACACTTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGAAAGTTTTAAACCACCCTGGGGTAGGGACAGACACTTGGTA  450

seq1  TCTGTCCTGCCCCTGGAATGTCCAATGTGGCAGGGGACAGGTAGGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTGCCCCTGGAATGTCCAATGTGGCAGGGGACAGGTAGGAGGAG  500

seq1  GGGTGAGGGGCTAGCTGCCTGGAAGCATATCCTACAGGAAGAGGGTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGGGGCTAGCTGCCTGGAAGCATATCCTACAGGAAGAGGGTGAGC  550

seq1  CAGCTGCAGGAGAGCCTC-TTGTCCTACTGTGTGAGATCACCGTCTTGAT  599
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGCTGCAGGAGAGCCTCTTTGTCCTACTGTGTGAGATCACCGTCTTGAT  600

seq1  CATGAACTTTGGGGTTTGGCTTAATAGTTTTGCATAGTACCCAGCAAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTTTGGGGTTTGGCTTAATAGTTTTGCATAGTACCCAGCAAAGG  650

seq1  CGTGAAGTGGCGCACACCTTTAATCCCAGCGCTTGGGAGGCAGAGGCAGG  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CGTGAAGTGGCGCACACCTTTAATCCCAGCGCTTGGGAGTCAGAGGCAGG  700

seq1  CAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGA  735
      ||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGA  736