BAC Information

Click to search

BAC

Clone NameB6Ng01-097O23
Chromosome9 (Build37)
Map Location 119,370,366 - 119,524,847
singlet/doubletdoublet
Overlap geneEndogl1, Scn5a, Scn10a
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b
Downstream geneScn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097O23.bB6Ng01-097O23.g
ACCDH908170DH908171
length9851,069
definitionDH908170|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O23, 5' end.DH908171|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,523,882 - 119,524,847)(119,370,366 - 119,371,428)
sequence
gaattccaggcaacatggtctgtgttctggccagcatttgtaacctgata
ccacctgcacagctacataagcctgatcctccctaatgcctggaaccaaa
aaggaaacgcaagggggatttttcctaccttatctgatattactggaaat
tttagggtacaagcctggctctggcagacctaacaagtgggactctaact
cccatcctcaaagtgctaagtagagagacaagtaagactggaaaccagag
agaggagattattcaacatggccacaaataaagagaaagaaataaagaga
tcacagatgcccaagtctatcctctaagtcctgatttgagttttaggttg
aaatagacagtgggagatatgcataggaagccctggtcaagtatggtcct
gcctgtcactgaccggtcactaacttacttccagtctatcctgcagcctg
accggttgccaaaactgcaaaaaatctcttcctgggagacaagctcccct
ctggctggcacaggactttgctcttctattccttcacccagcatgagact
cctagggaaattcagttgctcagggtctgtgtaccagtagtctgatggtc
aaacggaggggcacaaaggcctccactcctcccaggaccagctttctttc
catccagcatctgtctctggaatgttccaccgatgtgtttgggagcccga
gcagagcattggctgagacgctgtgtgtgggtgtttgctcagggcagagc
taacacagtaccacaaaatgatttcccaaagcatgcaggcaccgcacccc
ttgtctctggtaaagcccacaattctgaatcctgtcttcattgttgggaa
agctaaaggcttttacgaagaacttggttgattttatttctggtagtgct
cttctccttacagaaatcacagaaggtaggtttcaacatacttccacatt
atgtagaaaatgataagactccggggctattcctg
gaattctgggctatgtgcaatgcagataggagtttgtaaaaatcagggaa
aacctcttttttggcttgcatctcgctgccttatttgggcttctgacagg
gaatctcatctacagctagaactgtctgacaggagagtaaccgactgacg
gcagcaaaggcctgctctgggcacttcgagcatgcccagttgggtcttgt
cattttatcgggggccattaagcaaatggacatcccgcttttgtttttta
gacaacagatggaggcttttaagcatattggaaggacatttgaagaggct
tcttaatcctgttatttcattaatacggccaacctacagagcggcttgtt
tctctgcctctgccttcctcattgtgtggctactttcctaaagtgtctga
tttgacggcataatttagaagttcaatgtttggtaatccaggagcatttg
gaactaaacaaaagcagttgcatgtgagcgacgatcgaggtcatctagaa
agttctgttgctactgtgtctggctgcagcttcaagggctgtctgttgtt
tcttggggcgtttgggctgtttttactgtaagagctgggagtgctgaagc
cagcagttctgacttctatgtttagagcgttaggagttctgattagccaa
tgaggaggaaatgacagtcccctttcccactggaagttcagtgcttgctt
gtggcacccctttgtcctccgtcctgtggacatactgtgacccctgccct
ttgggggtaacattatggttttttgtcgttattttgctccttttgagacg
gagtttcttttgtgtagccctggctatcctgggccacccttgtagaccag
gctggccttgaactcagagatccacctgctttttcctccagggtcctggg
attaaagcctggagccaccgcttacagaggtaacagtattttaaagactg
gttagaactggttcagtactacgagttgctttgatgtcttttcttttact
tggcagtgggtgaatgctacactgagcctttcacaggccgttttcctgta
tggccattcttacagaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119523882_119524847
seq2: B6Ng01-097O23.b_45_1029 (reverse)

seq1  CAGG-ATAG-CCCGGAGTC-TATCATTTTCT-CATAATGTGG-AGTATG-  44
      |||| |||| ||||||||| ||||||||||| |||||||||| |||||| 
seq2  CAGGAATAGCCCCGGAGTCTTATCATTTTCTACATAATGTGGAAGTATGT  50

seq1  TGAAACCTAC--TCTGTGATTTCTGTAA-GAG-AGAGCACTA-CAG-AAT  88
      ||||||||||  |||||||||||||||| ||| ||||||||| ||| |||
seq2  TGAAACCTACCTTCTGTGATTTCTGTAAGGAGAAGAGCACTACCAGAAAT  100

seq1  AAAATC-ACCCAGT--CTCGT-AGAGCCTTTAGCTTTCCCAACAATGAAG  134
      |||||| ||| |||   |||| | ||||||||||||||||||||||||||
seq2  AAAATCAACCAAGTTCTTCGTAAAAGCCTTTAGCTTTCCCAACAATGAAG  150

seq1  ACAAGATTCAGAA-TGTGGGCTTTACCAGAGGCAAGGGGTGCGGTGCCTG  183
      ||| ||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  ACAGGATTCAGAATTGTGGGCTTTACCAGAGACAAGGGGTGCGGTGCCTG  200

seq1  CATGCTTTGGGAAATCATTTTGTGGTACTGTGTTAGCTCTGCCCTGAGC-  232
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATGCTTTGGGAAATCATTTTGTGGTACTGTGTTAGCTCTGCCCTGAGCA  250

seq1  AACACCCACACACAGCGTCTCAGCCAATGCTCTGCTC-GGCTCCCAAACA  281
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACACCCACACACAGCGTCTCAGCCAATGCTCTGCTCGGGCTCCCAAACA  300

seq1  CATCGGTGGAACATTCCAGAGACAGATGCTGGATGGAAAGAAAGCTGGTC  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGTGGAACATTCCAGAGACAGATGCTGGATGGAAAGAAAGCTGGTC  350

seq1  CTGGGAGGAGTGGAGGCCTTTGTGCCCCTCCGTTTGACCATCAGACTACT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGAGTGGAGGCCTTTGTGCCCCTCCGTTTGACCATCAGACTACT  400

seq1  GGTACACAGACCCTGAGCAACTGAATTTCCCTAGGAGTCTCATGCTGGGT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACAGACCCTGAGCAACTGAATTTCCCTAGGAGTCTCATGCTGGGT  450

seq1  GAAGGAATAGAAGAGCAAAGTCCTGTGCCAGCCAGAGGGGAGCTTGTCTC  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATAGAAGAGCAAAGTCCTGTGCCAGCCAGAGGGGAGCTTGTCTC  500

seq1  CCAGGAAGAGATTTTTTGCAGTTTTGGCAACCGGTCAGGCTGCAGGATAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGAGATTTTTTGCAGTTTTGGCAACCGGTCAGGCTGCAGGATAG  550

seq1  ACTGGAAGTAAGTTAGTGACCGGTCAGTGACAGGCAGGACCATACTTGAC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGTAAGTTAGTGACCGGTCAGTGACAGGCAGGACCATACTTGAC  600

seq1  CAGGGCTTCCTATGCATATCTCCCACTGTCTATTTCAACCTAAAACTCAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTCCTATGCATATCTCCCACTGTCTATTTCAACCTAAAACTCAA  650

seq1  ATCAGGACTTAGAGGATAGACTTGGGCATCTGTGATCTCTTTATTTCTTT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGACTTAGAGGATAGACTTGGGCATCTGTGATCTCTTTATTTCTTT  700

seq1  CTCTTTATTTGTGGCCATGTTGAATAATCTCCTCTCTCTGGTTTCCAGTC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATTTGTGGCCATGTTGAATAATCTCCTCTCTCTGGTTTCCAGTC  750

seq1  TTACTTGTCTCTCTACTTAGCACTTTGAGGATGGGAGTTAGAGTCCCACT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTCTCTCTACTTAGCACTTTGAGGATGGGAGTTAGAGTCCCACT  800

seq1  TGTTAGGTCTGCCAGAGCCAGGCTTGTACCCTAAAATTTCCAGTAATATC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTCTGCCAGAGCCAGGCTTGTACCCTAAAATTTCCAGTAATATC  850

seq1  AGATAAGGTAGGAAAAATCCCCCTTGCGTTTCCTTTTTGGTTCCAGGCAT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGTAGGAAAAATCCCCCTTGCGTTTCCTTTTTGGTTCCAGGCAT  900

seq1  TAGGGAGGATCAGGCTTATGTAGCTGTGCAGGTGGTATCAGGTTACAAAT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGGATCAGGCTTATGTAGCTGTGCAGGTGGTATCAGGTTACAAAT  950

seq1  GCTGGCCAGAACACAGACCATGTTGCCTGGAATTC  966
      |||||||||||||||||||||||||||||||||||
seq2  GCTGGCCAGAACACAGACCATGTTGCCTGGAATTC  985

seq1: chr9_119370366_119371428
seq2: B6Ng01-097O23.g_71_1139

seq1  GAATTCTGGGCTATGTGCAATGCAGATAGGAGTTTGTAAAAATCAGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCTATGTGCAATGCAGATAGGAGTTTGTAAAAATCAGGGAA  50

seq1  AACCTCTTTTTTGGCTTGCATCTCGCTGCCTTATTTGGGCTTCTGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTTTTTGGCTTGCATCTCGCTGCCTTATTTGGGCTTCTGACAGG  100

seq1  GAATCTCATCTACAGCTAGAACTGTCTGACAGGAGAGTAACCGACTGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCATCTACAGCTAGAACTGTCTGACAGGAGAGTAACCGACTGACG  150

seq1  GCAGCAAAGGCCTGCTCTGGGCACTTCGAGCATGCCCAGTTGGGTCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAAGGCCTGCTCTGGGCACTTCGAGCATGCCCAGTTGGGTCTTGT  200

seq1  CATTTTATCGGGGGCCATTAAGCAAATGGACATCCCGCTTTTGTTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATCGGGGGCCATTAAGCAAATGGACATCCCGCTTTTGTTTTTTA  250

seq1  GACAACAGATGGAGGCTTTTAAGCATATTGGAAGGACATTTGAAGAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGATGGAGGCTTTTAAGCATATTGGAAGGACATTTGAAGAGGCT  300

seq1  TCTTAATCCTGTTATTTCATTAATACGGCCAACCTACAGAGCGGCTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCCTGTTATTTCATTAATACGGCCAACCTACAGAGCGGCTTGTT  350

seq1  TCTCTGCCTCTGCCTTCCTCATTGTGTGGCTACTTTCCTAAAGTGTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCTGCCTTCCTCATTGTGTGGCTACTTTCCTAAAGTGTCTGA  400

seq1  TTTGACGGCATAATTTAGAAGTTCAATGTTTGGTAATCCAGGAGCATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACGGCATAATTTAGAAGTTCAATGTTTGGTAATCCAGGAGCATTTG  450

seq1  GAACTAAACAAAAGCAGTTGCATGTGAGCGACGATCGAGGTCATCTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAACAAAAGCAGTTGCATGTGAGCGACGATCGAGGTCATCTAGAA  500

seq1  AGTTCTGTTGCTACTGTGTCTGGCTGCAGCTTCAAGGGCTGTCTGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTTGCTACTGTGTCTGGCTGCAGCTTCAAGGGCTGTCTGTTGTT  550

seq1  TCTTGGGGCGTTTGGGCTGTTTTTACTGTAAGAGCTGGGAGTGCTGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGCGTTTGGGCTGTTTTTACTGTAAGAGCTGGGAGTGCTGAAGC  600

seq1  CAGCAGTTCTGACTTCTATGTTTAGAGCGTTAGGAGTTCTGATTAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTCTGACTTCTATGTTTAGAGCGTTAGGAGTTCTGATTAGCCAA  650

seq1  TGAGGAGGAAATGACAGTCCCCTTTCCCACTGGAAGTTCAGTGCTTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGAAATGACAGTCCCCTTTCCCACTGGAAGTTCAGTGCTTGCTT  700

seq1  GTGGCACCCCTTTGTCCTCCGTCCTGTGGACATACTGTGACCCCTGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACCCCTTTGTCCTCCGTCCTGTGGACATACTGTGACCCCTGCCCT  750

seq1  TT-GGGGTAACATTATGGTTTTTTGTCGTTATTTTGCTCCTTTTGAGACG  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTAACATTATGGTTTTTTGTCGTTATTTTGCTCCTTTTGAGACG  800

seq1  GAGTTTC-TTTGTGTAGCCCTGGCTATCCT-GGCCACCC-TGTAGACCAG  846
      ||||||| |||||||||||||||||||||| |||||||| ||||||||||
seq2  GAGTTTCTTTTGTGTAGCCCTGGCTATCCTGGGCCACCCTTGTAGACCAG  850

seq1  GCTGGCCTTGAACTCAGAGATCCACCTGCTTTTTCCTCCAGGGTCCTGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTGAACTCAGAGATCCACCTGCTTTTTCCTCCAGGGTCCTGGG  900

seq1  ATTAAAGCCTGGAGCCACCGCTTACAGAGGTAACAGTATTTTAAAGACTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCCTGGAGCCACCGCTTACAGAGGTAACAGTATTTTAAAGACTG  950

seq1  GTTAGAACTGG-TCAGTACTTACGAGTTGTTTGAATGTCTTTCCTTTTCC  995
      ||||||||||| ||||||| ||||||||| ||  |||||||| ||||| |
seq2  GTTAGAACTGGTTCAGTAC-TACGAGTTGCTTTGATGTCTTTTCTTTTAC  999

seq1  TTGGCAGTTGGTTGAATGCTACACTGAGGCCTTTCACAGGCCG-TTTCCT  1044
      ||||||| ||| ||||||||||||||| ||||||||||||||| ||||||
seq2  TTGGCAG-TGGGTGAATGCTACACTGA-GCCTTTCACAGGCCGTTTTCCT  1047

seq1  GTATGG-CAT--CTACAGAGGT  1063
      |||||| |||   |||||||||
seq2  GTATGGCCATTCTTACAGAGGT  1069