BAC Information

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BAC

Clone NameB6Ng01-098D24
Chromosome9 (Build37)
Map Location 122,418,908 - 122,611,189
singlet/doubletdoublet
Overlap geneLOC100040204, 9530059O14Rik
Upstream geneLyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193
Downstream geneLOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098D24.bB6Ng01-098D24.g
ACCDH908392DH908393
length1,180366
definitionDH908392|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D24, 5' end.DH908393|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,418,908 - 122,420,073)(122,610,818 - 122,611,189)
sequence
gaattcacctaacgattccctgtgtctggagggctgagggcgtggccagg
ggccgtgtctgttttcttcaagcctgcccgaccatcactaaggctaagac
ttctgggtttaaggatctgttctttcctgagttgttccagaagcctctga
tcctgcatatgaacggctgtgacagctctcctccaacccttagtctaacc
tgcaactgtcatggctgtacccacctgcaatcaaatctcagtctccaaga
ttgccgcaagagacctgagaatcagaggtcctttgaaaagacctcactgc
cccatcgatttctcacccaatgtgggtgctaagcaaatgataacctcctg
aaagagcggttcttacacaggggtcacctaagatcattggaaaacataga
tgtttaccttacaattcatagcagtagcaaaatcgcaattatgaattgtg
tactaattatgaagtagtaatgaaggtggtactgtggttagggacaccac
agcacgagggactgtattaaagggtcccagcactgggaaggttgggaacc
actgagctagagttccccagggttgttaatgcacagctggccaccaagct
tcacggtacttgagtgagacgggttttaaccctggtgaaggaggagctga
aggtggacaggagacagagaggaaaccagagatcagcagtgacatgaagc
tgtccctccctcaggctggggtgatcaaagggaaagaaggtgaaatttcc
tgatccctgggagaatggaattcacagcatgcctgatcaataaataagac
ctgggccagaaccaggcttcaggagacccagactgcagcaaagggaagag
agcaacggtgtgttctgaatctagtaggcagccagctatccctcagagac
ttcttaccagtgagcccgtgctttgagagcttagaagacaggctgaggga
atacagaattatgtagttgtacagaaatatggaagtgaagcagaagaaca
attggtgcctagggcaacaaaactccaggaaggacacagaggcttcctgg
cctttcatggtacttaactaacactccctcatcagggatgtaactggggc
gacgtagagccttccttaaacacgagacatgctgtatttcctctctgtgt
cctactgtgggggccctccacacacccaca
acagatccacacaatagtcacccaatcacagagggagaacacaggtacat
tgtgtctgcattgtgtttttttcggtacagtttctgatttcagcaccacg
gtgttggacagttccaagccagcttgcttgtcagtttcagcgcttagaag
tatgctaaaacagaactagatgagagagggatttattcagggaaagctgt
gaaggataaaggggaggaagcaggagttggtagagagagcctttgatgac
aacgtggatctacctcttgtgaaagaaaatgggcagagaatcacgttggg
aaagccttagacctctaaatggtccacctgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122418908_122420073
seq2: B6Ng01-098D24.b_48_1227

seq1  GAATTCACCTAACGATTCCCTGTGTCTGGAGGGCTGAGGGCGTGGCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAACGATTCCCTGTGTCTGGAGGGCTGAGGGCGTGGCCAGG  50

seq1  GGCCGTGTCTGTTTTCTTCAAGCCTGCCCGACCATCACTAAGGCTAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTGTCTGTTTTCTTCAAGCCTGCCCGACCATCACTAAGGCTAAGAC  100

seq1  TTCTGGGTTTAAGGATCTGTTCTTTCCTGAGTTGTTCCAGAAGCCTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTTTAAGGATCTGTTCTTTCCTGAGTTGTTCCAGAAGCCTCTGA  150

seq1  TCCTGCATATGAACGGCTGTGACAGCTCTCCTCCAACCCTTAGTCTAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATATGAACGGCTGTGACAGCTCTCCTCCAACCCTTAGTCTAACC  200

seq1  TGCAACTGTCATGGCTGTACCCACCTGCAATCAAATCTCAGTCTCCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGTCATGGCTGTACCCACCTGCAATCAAATCTCAGTCTCCAAGA  250

seq1  TTGCCGCAAGAGACCTGAGAATCAGAGGTCCTTTGAAAAGACCTCACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGCAAGAGACCTGAGAATCAGAGGTCCTTTGAAAAGACCTCACTGC  300

seq1  CCCATCGATTTCTCACCCAATGTGGGTGCTAAGCAAATGATAACCTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCGATTTCTCACCCAATGTGGGTGCTAAGCAAATGATAACCTCCTG  350

seq1  AAAGAGCGGTTCTTACACAGGGGTCACCTAAGATCATTGGAAAACATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCGGTTCTTACACAGGGGTCACCTAAGATCATTGGAAAACATAGA  400

seq1  TGTTTACCTTACAATTCATAGCAGTAGCAAAATCGCAATTATGAATTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCTTACAATTCATAGCAGTAGCAAAATCGCAATTATGAATTGTG  450

seq1  TACTAATTATGAAGTAGTAATGAAGGTGGTACTGTGGTTAGGGACACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTATGAAGTAGTAATGAAGGTGGTACTGTGGTTAGGGACACCAC  500

seq1  AGCACGAGGGACTGTATTAAAGGGTCCCAGCACTGGGAAGGTTGGGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGAGGGACTGTATTAAAGGGTCCCAGCACTGGGAAGGTTGGGAACC  550

seq1  ACTGAGCTAGAGTTCCCCAGGGTTGTTAATGCACAGCTGGCCACCAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTAGAGTTCCCCAGGGTTGTTAATGCACAGCTGGCCACCAAGCT  600

seq1  TCACGGTACTTGAGTGAGACGGGTTTTAACCCTGGTGAAGGAGGAGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGTACTTGAGTGAGACGGGTTTTAACCCTGGTGAAGGAGGAGCTGA  650

seq1  AGGTGGACAGGAGACAGAGAGGAAACCAGAGATCAGCAGTGACATGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGACAGGAGACAGAGAGGAAACCAGAGATCAGCAGTGACATGAAGC  700

seq1  TGTCCCTCCCTCAGGCTGGGGTGATCAAAGGGAAAGAAGGTGAAATTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTCCCTCCCTCAGGCTGGGGTGATCAAAGGGAAAGAAGGTGAAATTTCC  750

seq1  TGATCCCTGGGAGAATGGAATTCACAGCATGCCTGATCAATAAATAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTGGGAGAATGGAATTCACAGCATGCCTGATCAATAAATAAGAC  800

seq1  CTGGGCCAGAACCAGGCTTCAGGAGACCCAGACTGCAGCAAAGGGAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCAGAACCAGGCTTCAGGAGACCCAGACTGCAGCAAAGGGAAGAG  850

seq1  AGCAACGGTGTGTTCTGAATCTAGTAGGCAGCCAGCTATCCCTCAGAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACGGTGTGTTCTGAATCTAGTAGGCAGCCAGCTATCCCTCAGAGAC  900

seq1  -TCTTACCAGTGAGCCCGTGCCTTGAGAGCTTAGAAGACAGGCTGAGGGA  949
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCTTACCAGTGAGCCCGTGCTTTGAGAGCTTAGAAGACAGGCTGAGGGA  950

seq1  ATACAGAA-TATGGAGTTGTACAGAAATAT-GAAGTGGAGCAG-AGACCA  996
      |||||||| |||| |||||||||||||||| |||||| ||||| ||| ||
seq2  ATACAGAATTATGTAGTTGTACAGAAATATGGAAGTGAAGCAGAAGAACA  1000

seq1  A-TGGAGCCTAGGGCAACAAAACTCCAGGAAGGACACAGAAGCCTCCTG-  1044
      | ||| |||||||||||||||||||||||||||||||||| || ||||| 
seq2  ATTGGTGCCTAGGGCAACAAAACTCCAGGAAGGACACAGAGGCTTCCTGG  1050

seq1  -CCTTCATGGCACCTTACTAACACCCCCTCATCA-GGATGTACCTGGGGC  1092
       | ||||||| || | |||||||| ||||||||| ||||||| |||||||
seq2  CCTTTCATGGTACTTAACTAACACTCCCTCATCAGGGATGTAACTGGGGC  1100

seq1  AGACGAAGAAGCCTTCCAT-AACTCAGCACTTGCTGT-TTTCCTCTCCTG  1140
       |||| || |||||||| | ||| |   || |||||| |||||||| |||
seq2  -GACGTAG-AGCCTTCCTTAAACACGAGACATGCTGTATTTCCTCT-CTG  1147

seq1  TCTCCT------GTGGCCCTCCACAC-CCCACA  1166
      | ||||      | |||||||||||| ||||||
seq2  TGTCCTACTGTGGGGGCCCTCCACACACCCACA  1180

seq1: chr9_122610818_122611189
seq2: B6Ng01-098D24.g_66_437 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACAGGTGGACCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACAGGTGGACCATTT  50

seq1  AGAGGTCTAAGGCTTTCCCAACGTGATTCTCTGCCCATTTTCTTTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTAAGGCTTTCCCAACGTGATTCTCTGCCCATTTTCTTTCACAA  100

seq1  GAGGTAGATCCACGTTGTCATCAAAGGCTCTCTCTACCAACTCCTGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGATCCACGTTGTCATCAAAGGCTCTCTCTACCAACTCCTGCTTC  150

seq1  CTCCCCTTTATCCTTCACAGCTTTCCCTGAATAAATCCCTCTCTCATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTTATCCTTCACAGCTTTCCCTGAATAAATCCCTCTCTCATCTA  200

seq1  GTTCTGTTTTAGCATACTTCTAAGCGCTGAAACTGACAAGCAAGCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTTTAGCATACTTCTAAGCGCTGAAACTGACAAGCAAGCTGGCT  250

seq1  TGGAACTGTCCAACACCGTGGTGCTGAAATCAGAAACTGTACCGAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGTCCAACACCGTGGTGCTGAAATCAGAAACTGTACCGAAAAAA  300

seq1  ACACAATGCAGACACAATGTACCTGTGTTCTCCCTCTGTGATTGGGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGCAGACACAATGTACCTGTGTTCTCCCTCTGTGATTGGGTGAC  350

seq1  TATTGTGTGGATCTGTGAATTC  372
      ||||||||||||||||||||||
seq2  TATTGTGTGGATCTGTGAATTC  372