BAC Information

Click to search

BAC

Clone NameB6Ng01-098F22
Chromosome9 (Build37)
Map Location 108,492,629 - 108,493,477
singlet/doubletsinglet
Overlap gene4933406E20Rik
Upstream geneIfrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6
Downstream geneArih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098F22.g
ACCDH908483
length856
definitionDH908483|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagacagccagggctgtgcggagaaaccctgtctcgaaaaacca
aaaccaaaaagaaaaaaaacaaccaagggaaagctgttggtgagacaatc
tcagtgggcaaagcactcgtcacaaaaccccgagctcaatgctcaatccg
tgacgtaggagagaactgactccagaaagccatcttctgtcctccacagg
caagttctgcatgtgtgcctggatccatgtccacacccatgtataataat
aataaaaaataaaaaccgacattcggagttgacctgtagcctctgtacat
atatgcatacacatgtacgtgcacacacatacatgttagacgtggtggct
catacctagcattccagccttgggaaggggaaagcaagaggattttcatg
agttcatagtgagttctgaggcagcctgagcttcagtgtgagggactatg
ttaattagaaagaaatcctgctcccccacccccaccccccgaaaaagtca
catcatgtcataggtctgtgattctccagacctgatactggacgggagga
tgatcagttataaacccgtagctatcgagtagctagggctacccagtaag
accctacctcaaaaagtacagggggaggggccggttaagagaaaacagag
ccactgtaggaaagtgattgttctcagcatggtgtggtggtgcatgctgt
tttgttttgtttttttttaagatgtatttacttaattttatgtatatgag
tgcttctatctgcatgtacaccaccatgccagaaagaggcatcagaaccc
actacagattggctgtgagtcacctacgtggttgctgggaatccgaactc
agcaat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108492629_108493477
seq2: B6Ng01-098F22.g_68_922

seq1  GAATTCCAGACAGCCAGGGCTGTGCGGAGAAACCCTGTCTCGAAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAGCCAGGGCTGTGCGGAGAAACCCTGTCTCGAAAAACCA  50

seq1  AAACCAAAAAGAAAAAAAACAACCAAGGGAAAGCTGTTGGTGAGACAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAGAAAAAAAACAACCAAGGGAAAGCTGTTGGTGAGACAATC  100

seq1  TCAGTGGGCAAAGCACTCGTCACAAAACCCCGAGCTCAATGCTCAATCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGCAAAGCACTCGTCACAAAACCCCGAGCTCAATGCTCAATCCG  150

seq1  TGACGTAGGAGAGAACTGACTCCAGAAAGCCATCTTCTGTCCTCCACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTAGGAGAGAACTGACTCCAGAAAGCCATCTTCTGTCCTCCACAGG  200

seq1  CAAGTTCTGCATGTGTGCCTGGATCCATGTCCACACCCATGTATAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTGCATGTGTGCCTGGATCCATGTCCACACCCATGTATAATAAT  250

seq1  AATAAAAAATAAAAACCGACATTCGGAGTTGACCTGTAGCCTCTGTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATAAAAACCGACATTCGGAGTTGACCTGTAGCCTCTGTACAT  300

seq1  ATATGCATACACATGTACGTGCACACACATACATGTTAGACGTGGTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATACACATGTACGTGCACACACATACATGTTAGACGTGGTGGCT  350

seq1  CATACCTAGCATTCCAGCCTTGGGAAGGGGAAAGCAAGAGGATTTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTAGCATTCCAGCCTTGGGAAGGGGAAAGCAAGAGGATTTTCATG  400

seq1  AGTTCATAGTGAGTTCTGAGGCAGCCTGAGCTTCAGTGTGAGGGACTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATAGTGAGTTCTGAGGCAGCCTGAGCTTCAGTGTGAGGGACTATG  450

seq1  TTAATTAGAAAGAAATCCTGCTCCCCCACCCCCACCCCCCGAAAAAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGAAAGAAATCCTGCTCCCCCACCCCCACCCCCCGAAAAAGTCA  500

seq1  CATCATGTCATAGGTCTGTGATTCTCCAGACCTGATACTGGACGGGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTCATAGGTCTGTGATTCTCCAGACCTGATACTGGACGGGAGGA  550

seq1  TGATCAGTTATAAACCCGTAGCTATCGAGTAGCTAGGGCTACCCAGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGTTATAAACCCGTAGCTATCGAGTAGCTAGGGCTACCCAGTAAG  600

seq1  ACCCTACCTCAAAAAGTACAGGGGGAGGGGCCGGTTAAGAGAAAACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACCTCAAAAAGTACAGGGGGAGGGGCCGGTTAAGAGAAAACAGAG  650

seq1  CCACTGTAGGAAAGTGATTGTTCTCAGCATGGTGTGGTGGTGCATGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTAGGAAAGTGATTGTTCTCAGCATGGTGTGGTGGTGCATGCTGT  700

seq1  TTTGTTTTGTTTTTTTTTAAGATGTATTTACTT-ATTTTATGTATATGAG  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTGTTTTGTTTTTTTTTAAGATGTATTTACTTAATTTTATGTATATGAG  750

seq1  TGC-TCTATCTGCATGTACACCACCATGCCAG-AAGAGGCATCAGAACCC  797
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCTTCTATCTGCATGTACACCACCATGCCAGAAAGAGGCATCAGAACCC  800

seq1  ACTACAGA-TGGCTGTGAGTCACC-ACGTGGTTGCTGGGAAT-CGAACTC  844
      |||||||| ||||||||||||||| ||||||||||||||||| |||||||
seq2  ACTACAGATTGGCTGTGAGTCACCTACGTGGTTGCTGGGAATCCGAACTC  850

seq1  AGCAA  849
      |||||
seq2  AGCAA  855