BAC Information

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BAC

Clone NameB6Ng01-098L22
Chromosome9 (Build37)
Map Location 88,775,379 - 88,954,501
singlet/doubletdoublet
Overlap geneLOC100039741, Bcl2a1a, LOC100039689
Upstream geneLOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731
Downstream geneEG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098L22.bB6Ng01-098L22.g
ACCDH908745DH908746
length921655
definitionDH908745|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L22, 5' end.DH908746|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,775,379 - 88,776,201)(88,953,847 - 88,954,501)
sequence
gaattccacagagaaaaccaattttcaaaaagcaacacaattggaataca
atcagacctgcatttctatagaagactaacaaaggcattcttacggtttc
tcgggattctggaacattgataccatctgggaaatataggataaaacaga
gtatctgtcaggttgttaataactagtgattataaaaacctcagggaaca
ttctcaatttgcacatgagtatatggagatagcctggactgctttgagtc
cgttctccagtgtacaaggatgtttaaaagaggggaaaaccagaacaaaa
agatacgtaggatcctggttccttaactaaaacccttttattttatttta
tttttttgcatatttcttttttttaattaggtatttagctcatttacatt
tccaatgctataccaaaagtcccccatacccacccacccccactccccta
cccgcccactctcccgttttggccctggcgttcccctgttctggggcata
taaagtttgcgtgtccaatgggcctctctttccagtgatggccgactagg
ccatcttttgatacatatgcagctagagtcaagagctccggggtactgct
tagttcataatgttgatccacctataggggttgcagatcccttttagctc
cttgggtacttttctctagctcctccattgggagccctgtgatccatcca
ttagctgactgtgagcatccacttctgtgtttgctaggccccggcatggt
ctcacaagagacagctacatctgggttcttttcgataaaatcttgctagt
gtatgcaatggtgtcagcgttttggatgctgattattggggtggatcctc
tggatgtggcagtcttctacatgggtcatcctttcatctcagctccaaac
tttgtcttctgttactccttc
gaattcagtgtggggcggggtgggggaatttccctaggaactgctatctt
gttatggttatttttctgagaacagctcatttggttttggcagccgtaga
tttagtcattttgctgagagtcacttcagaggggaaggcgctaggtggtc
ttcaacttattttggatattacagcttccctttgctttttgggggatgtc
agaatgccagaagctagtgggacctcaaagagttgatagtggggggtggg
gactgggatcaagatctttaatggttaaggtagcctgattgaggaggagc
cacaggtatatattgtggaggctgaaaagtggtcctgggctgcactctgc
agctgttggatagtcctccattgacaaatggattggttgactgaggctgg
agaattactctgtttgaggggcctgaggtaggtccctcaagcagtttccc
tggtttgctaaaattcctgtatcactagagattacagtagcacctgatga
gaggttgaggtgcattatatggttcacatcctattagcctgtgtcttcct
attggggaattgagtccattgatagggagagatgttaatgaccagtcatt
gttttttccatattttgatgttgattatgttaatgcttttgtgtgtgtgt
gtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88775379_88776201
seq2: B6Ng01-098L22.b_49_876

seq1  GAATTCCACAGAGAAAACCAATTTTCAAAAAGCAACACAATTGGAATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAGAAAACCAATTTTCAAAAAGCAACACAATTGGAATACA  50

seq1  ATCAGACCTGCATTTCTATAGAAGACTAACAAAGGCATTCTTACGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACCTGCATTTCTATAGAAGACTAACAAAGGCATTCTTACGGTTTC  100

seq1  TCGGGATTCTGGAACATTGATACCATCTGGGAAATATAGGATAAAACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGATTCTGGAACATTGATACCATCTGGGAAATATAGGATAAAACAGA  150

seq1  GTATCTGTCAGGTTGTTAATAACTAGTGATTATAAAAACCTCAGGGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTCAGGTTGTTAATAACTAGTGATTATAAAAACCTCAGGGAACA  200

seq1  TTCTCAATTTGCACATGAGTATATGGAGATAGCCTGGACTGCTTTGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATTTGCACATGAGTATATGGAGATAGCCTGGACTGCTTTGAGTC  250

seq1  CGTTCTCCAGTGTACAAGGATGTTTAAAAGAGGGGAAAACCAGAACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCCAGTGTACAAGGATGTTTAAAAGAGGGGAAAACCAGAACAAAA  300

seq1  AGATACGTAGGATCCTGGTTCCTTAACTAAAACCCTTTTATTTTATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACGTAGGATCCTGGTTCCTTAACTAAAACCCTTTTATTTTATTTTA  350

seq1  TTTTTTTGCATATTTCTTTTTTTTAATTAGGTATTTAGCTCATTTACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCATATTTCTTTTTTTTAATTAGGTATTTAGCTCATTTACATT  400

seq1  TCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTA  450

seq1  CCCGCCCACTCTCCCGTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCACTCTCCCGTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATA  500

seq1  TAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGG  550

seq1  CCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGCT  600

seq1  TAGTTCATAATGTTGATCCACCTATA-GGGTTGCAGATCCC-TTTAGCTC  648
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TAGTTCATAATGTTGATCCACCTATAGGGGTTGCAGATCCCTTTTAGCTC  650

seq1  CTTGGGTAC-TTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCA  697
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTACTTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCA  700

seq1  TTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATGGT  750

seq1  CTCACAAGAGACAGCTACATCTGGGTTC-TTTCGATAAAATCTTGCTAGT  796
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCACAAGAGACAGCTACATCTGGGTTCTTTTCGATAAAATCTTGCTAGT  800

seq1  GTATGCAATGGTGTCAGCG-TTTGGATG  823
      ||||||||||||||||||| ||||||||
seq2  GTATGCAATGGTGTCAGCGTTTTGGATG  828

seq1: chr9_88953847_88954501
seq2: B6Ng01-098L22.g_68_722 (reverse)

seq1  ATCACACACACACACAAAAGCATTAACATAATCAACATCAAAATATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACACACACACAAAAGCATTAACATAATCAACATCAAAATATGGAA  50

seq1  AAAACAATGACTGGTCATTAACATCTCTCCCTATCAATGGACTCAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATGACTGGTCATTAACATCTCTCCCTATCAATGGACTCAATTCC  100

seq1  CCAATAGGAAGACACAGGCTAATAGGATGTGAACCATATAATGCACCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGGAAGACACAGGCTAATAGGATGTGAACCATATAATGCACCTCA  150

seq1  ACCTCTCATCAGGTGCTACTGTAATCTCTAGTGATACAGGAATTTTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCATCAGGTGCTACTGTAATCTCTAGTGATACAGGAATTTTAGCA  200

seq1  AACCAGGGAAACTGCTTGAGGGACCTACCTCAGGCCCCTCAAACAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGAAACTGCTTGAGGGACCTACCTCAGGCCCCTCAAACAGAGTA  250

seq1  ATTCTCCAGCCTCAGTCAACCAATCCATTTGTCAATGGAGGACTATCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCAGCCTCAGTCAACCAATCCATTTGTCAATGGAGGACTATCCAA  300

seq1  CAGCTGCAGAGTGCAGCCCAGGACCACTTTTCAGCCTCCACAATATATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGAGTGCAGCCCAGGACCACTTTTCAGCCTCCACAATATATAC  350

seq1  CTGTGGCTCCTCCTCAATCAGGCTACCTTAACCATTAAAGATCTTGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTCCTCCTCAATCAGGCTACCTTAACCATTAAAGATCTTGATCC  400

seq1  CAGTCCCCACCCCCCACTATCAACTCTTTGAGGTCCCACTAGCTTCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCCACCCCCCACTATCAACTCTTTGAGGTCCCACTAGCTTCTGGC  450

seq1  ATTCTGACATCCCCCAAAAAGCAAAGGGAAGCTGTAATATCCAAAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACATCCCCCAAAAAGCAAAGGGAAGCTGTAATATCCAAAATAAG  500

seq1  TTGAAGACCACCTAGCGCCTTCCCCTCTGAAGTGACTCTCAGCAAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACCACCTAGCGCCTTCCCCTCTGAAGTGACTCTCAGCAAAATGA  550

seq1  CTAAATCTACGGCTGCCAAAACCAAATGAGCTGTTCTCAGAAAAATAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTACGGCTGCCAAAACCAAATGAGCTGTTCTCAGAAAAATAACC  600

seq1  ATAACAAGATAGCAGTTCCTAGGGAAATTCCCCCACCCCGCCCCACACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGATAGCAGTTCCTAGGGAAATTCCCCCACCCCGCCCCACACTG  650

seq1  AATTC  655
      |||||
seq2  AATTC  655