BAC Information

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BAC

Clone NameB6Ng01-098O16
Chromosome9 (Build37)
Map Location 49,000,943 - 49,163,109
singlet/doubletdoublet
Overlap geneEG235327, Drd2
Upstream geneD930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5
Downstream geneAnkk1, Ttc12, Ncam1, EG667975, LOC100042806, LOC100043346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098O16.bB6Ng01-098O16.g
ACCDH908859DH908860
length1,1051,085
definitionDH908859|Mus musculus domesticus DNA, BAC clone: B6Ng01-098O16, 5' end.DH908860|Mus musculus domesticus DNA, BAC clone: B6Ng01-098O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,162,019 - 49,163,109)(49,000,943 - 49,002,023)
sequence
gaattcccagcctgccttaagtgcttgaagaatttcagaagcaactgtag
agcttaagtggtcttctaagaccattgctctcttaggattgaacatgtgc
tgtggggaaagaccactatcccagtatggtcacttgcattaggatgaatg
cctcatcttgagtgataagaatccctttaccaccttcaaggaatttaacc
atcaagtgaggtgaacaggccagccagtagacaatttacagtgcagtagc
gctcagtcctaactgcatgctgagaaacatgtaggaagagaccccaggcc
aggctggccaggcaatgtagaaaggaaaccctgagaaggcttcctagaag
agttgatgcatgggttcagttaaaaagattgagcagggatcggccttcaa
agtcagtggggcagggatcggccttcaaggtcaatggagcaagaattcaa
ggtcaatggagcaagcaaggtcaatggagagatatggtgttgatttacta
gttttgatatactgggtgcagagatgcaatggacacaactgatccagtct
ctttcccactcttctagcctccatttctcccatctctcatccctgtcttt
tctaccaactcatcacctctctcctctttctcttgtactctgcacatggg
agaggaatgaggtctagtaaacccataatctattgaggatgcaggaaacg
atggtaagaaatgacccagggcagaggtatggaccatgcctcagagcaag
ccaatctctttcagctttatccaagggcatcacttcctctgtccccattt
ccaatccctgtgccgcctcacagttttgtaaagaccctggtcctcaaagg
tccatgccacccaacatggcatctccacccccctttgtgtcacagctgtt
caatggatactttggtctgatcccctgcctcacagaaagcttgttgacac
accagccttacttgtttttcacccaacttctaagttccttccattggatc
tgggtgtaatatcttgataccgcttgaatgctattagcttgtggaccttc
agacttccaatttcgtgactgtcttccatggactgcacccttgagccctg
gatca
gaattcccatccagccgcacattctcatgacatagtcatctgtgaaattt
gtgatccattcacagaaaatgtggtgggaagatgagagaactcaatctac
cagaaatggactttgaaacctctctgggcctgtccctggacgttgtcagc
ttctccagcagttgcaaggcctgtcaagaggcaaggtggttattaatggt
taagcaagcttggctaactactggtttaagaaggagctgagacactgaga
caggtgtttcaggagaagagacttcccgactaatgcaaataaatctgctg
agcagttgaagtgtaattaaaattactgcaatatttatagagatctttta
ttccttggtagagttccacttatgtgcaaatgatttcaaaggaaaagttg
ggggagtattaaatgttccaactaattaaataatgcaatgggttctgatt
atgccattgacatccactgagctggagaagacggctcttatagaaataaa
acccaaacgatcgatgcagtgggctctgttgccatttcatatttgaacat
aaagaagacgagatgaccccatgacaaatggccttcttactcgtgagaaa
actaggtctaaaaaattgtcgaaatctgtggtcaccagtatatccaggag
ctatcgatttgtttccattaagagctggagtttcagtgctcagataggac
atcaagaaatgaaaaagtcagaactaggaggtgtagctcaatgggtaaaa
gtttttcccacatgaatgaggctctgggttctaccctcagcacagtaagc
atacacaagtgcacatatgcacgtgcacatctaaaagatgcttgtgttag
ttcttcgagaatgtcacacaatgtattttgttcacattcatcctcccaca
accctcccccaactcctcccaggtctactccacttccttcgctcttccaa
ctttgtgtccttttaacaacaacttagtgactcaatttgtggtgccacat
atttctggggtgtggccatccaccgaagcatggtcaacctaccagggagc
cccaccctggaaagaaaatgattctttgttctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_49162019_49163109
seq2: B6Ng01-098O16.b_44_1148 (reverse)

seq1  TGATCCAGGGCCCAAGGGTGCAGT-CATGGGAAACACTGTCCGAATTGGA  49
      ||||||||||| |||||||||||| ||||| | ||| |  |  |||||||
seq2  TGATCCAGGGCTCAAGGGTGCAGTCCATGGAAGACAGTCACGAAATTGGA  50

seq1  AGGTCTGAAGGT-CACAGAGCTAAT-GCA-TCAAGCCGTTTCAAGATAAT  96
      | |||||||||| |||| ||||||| ||| |||||| || ||||||| ||
seq2  A-GTCTGAAGGTCCACA-AGCTAATAGCATTCAAGCGGTATCAAGAT-AT  97

seq1  TACACCCAGAT-CAATGGAAGG-ACTT-GGAGTTGGGTG-AAAACCAGT-  141
      ||||||||||| |||||||||| |||| | ||||||||| ||||| ||| 
seq2  TACACCCAGATCCAATGGAAGGAACTTAGAAGTTGGGTGAAAAACAAGTA  147

seq1  AGGCT-GTGTGTCAAC-AGC-TTCTGTGAGGCAGGGGATCAGACC-AGGT  187
      ||||| |||||||||| ||| |||||||||||||||||||||||| | ||
seq2  AGGCTGGTGTGTCAACAAGCTTTCTGTGAGGCAGGGGATCAGACCAAAGT  197

seq1  ATCCA-TGGACAGCTGTGACACAGA-GGGGGTGGAGATGCCATGTTGGGT  235
      ||||| || |||||||||||||| | ||||||||||||||||||||||||
seq2  ATCCATTGAACAGCTGTGACACAAAGGGGGGTGGAGATGCCATGTTGGGT  247

seq1  GGCATGGACCTTTGAGGACCAGGGTCTTTACAAAACTGTGAGGCGGCACA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGACCTTTGAGGACCAGGGTCTTTACAAAACTGTGAGGCGGCACA  297

seq1  GGGATTGG-AATGGGGACAGAGGAAGTGATGCCCTTGGATAAAGCTGAAA  334
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGAAATGGGGACAGAGGAAGTGATGCCCTTGGATAAAGCTGAAA  347

seq1  GAGATTGGCTTGCTCTGAGGCATGGTCCATACCTCTGCCCTGGGTCATTT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGCTTGCTCTGAGGCATGGTCCATACCTCTGCCCTGGGTCATTT  397

seq1  CTTACCATCGTTTCCTGCATCCTCAATAGATTATGGGTTTACTAGACCTC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATCGTTTCCTGCATCCTCAATAGATTATGGGTTTACTAGACCTC  447

seq1  ATTCCTCTCCCATGTGCAGAGTACAAGAGAAAGAGGAGAGAGGTGATGAG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTCCCATGTGCAGAGTACAAGAGAAAGAGGAGAGAGGTGATGAG  497

seq1  TTGGTAG-AAAGACAGGGATGAGAGATGGGAGAAATGGAGGCTAGAAGAG  533
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGAAAAGACAGGGATGAGAGATGGGAGAAATGGAGGCTAGAAGAG  547

seq1  TGGGAAAGAGACTGGATCAGTTGTGTCCATTGCATCTCTGCACCCAGTAT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGAGACTGGATCAGTTGTGTCCATTGCATCTCTGCACCCAGTAT  597

seq1  ATCAAAACTAGTAAATCAACACCATATCTCTCCATTGACCTTGCTTGCTC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACTAGTAAATCAACACCATATCTCTCCATTGACCTTGCTTGCTC  647

seq1  CATTGACCTTGAATTCTTGCTCCATTGACCTTGAAGGCCGATCCCTGCCC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACCTTGAATTCTTGCTCCATTGACCTTGAAGGCCGATCCCTGCCC  697

seq1  CACTGACTTTGAAGGCCGATCCCTGCTCAATCTTTTTAACTGAACCCATG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTTTGAAGGCCGATCCCTGCTCAATCTTTTTAACTGAACCCATG  747

seq1  CATCAACTCTTCTAGGAAGCCTTCTCAGGGTTTCCTTTCTACATTGCCTG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTCTTCTAGGAAGCCTTCTCAGGGTTTCCTTTCTACATTGCCTG  797

seq1  GCCAGCCTGGCCTGGGGTCTCTTCCTACATGTTTCTCAGCATGCAGTTAG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGCCTGGGGTCTCTTCCTACATGTTTCTCAGCATGCAGTTAG  847

seq1  GACTGAGCGCTACTGCACTGTAAATTGTCTACTGGCTGGCCTGTTCACCT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGCGCTACTGCACTGTAAATTGTCTACTGGCTGGCCTGTTCACCT  897

seq1  CACTTGATGGTTAAATTCCTTGAAGGTGGTAAAGGGATTCTTATCACTCA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGATGGTTAAATTCCTTGAAGGTGGTAAAGGGATTCTTATCACTCA  947

seq1  AGATGAGGCATTCATCCTAATGCAAGTGACCATACTGGGATAGTGGTCTT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGCATTCATCCTAATGCAAGTGACCATACTGGGATAGTGGTCTT  997

seq1  TCCCCACAGCACATGTTCAATCCTAAGAGAGCAATGGTCTTAGAAGACCA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACAGCACATGTTCAATCCTAAGAGAGCAATGGTCTTAGAAGACCA  1047

seq1  CTTAAGCTCTACAGTTGCTTCTGAAATTCTTCAAGCACTTAAGGCAGGCT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCTCTACAGTTGCTTCTGAAATTCTTCAAGCACTTAAGGCAGGCT  1097

seq1  GGGAATTC  1091
      ||||||||
seq2  GGGAATTC  1105

seq1: chr9_49000943_49002023
seq2: B6Ng01-098O16.g_68_1152

seq1  GAATTCCCATCCAGCCGCACATTCTCATGACATAGTCATCTGTGAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCCAGCCGCACATTCTCATGACATAGTCATCTGTGAAATTT  50

seq1  GTGATCCATTCACAGAAAATGTGGTGGGAAGATGAGAGAACTCAATCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCATTCACAGAAAATGTGGTGGGAAGATGAGAGAACTCAATCTAC  100

seq1  CAGAAATGGACTTTGAAACCTCTCTGGGCCTGTCCCTGGACGTTGTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGGACTTTGAAACCTCTCTGGGCCTGTCCCTGGACGTTGTCAGC  150

seq1  TTCTCCAGCAGTTGCAAGGCCTGTCAAGAGGCAAGGTGGTTATTAATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGCAGTTGCAAGGCCTGTCAAGAGGCAAGGTGGTTATTAATGGT  200

seq1  TAAGCAAGCTTGGCTAACTACTGGTTTAAGAAGGAGCTGAGACACTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGCTTGGCTAACTACTGGTTTAAGAAGGAGCTGAGACACTGAGA  250

seq1  CAGGTGTTTCAGGAGAAGAGACTTCCCGACTAATGCAAATAAATCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTTCAGGAGAAGAGACTTCCCGACTAATGCAAATAAATCTGCTG  300

seq1  AGCAGTTGAAGTGTAATTAAAATTACTGCAATATTTATAGAGATCTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGAAGTGTAATTAAAATTACTGCAATATTTATAGAGATCTTTTA  350

seq1  TTCCTTGGTAGAGTTCCACTTATGTGCAAATGATTTCAAAGGAAAAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGTAGAGTTCCACTTATGTGCAAATGATTTCAAAGGAAAAGTTG  400

seq1  GGGGAGTATTAAATGTTCCAACTAATTAAATAATGCAATGGGTTCTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTATTAAATGTTCCAACTAATTAAATAATGCAATGGGTTCTGATT  450

seq1  ATGCCATTGACATCCACTGAGCTGGAGAAGACGGCTCTTATAGAAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTGACATCCACTGAGCTGGAGAAGACGGCTCTTATAGAAATAAA  500

seq1  ACCCAAACGATCGATGCAGTGGGCTCTGTTGCCATTTCATATTTGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACGATCGATGCAGTGGGCTCTGTTGCCATTTCATATTTGAACAT  550

seq1  AAAGAAGACGAGATGACCCCATGACAAATGGCCTTCTTACTCGTGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGACGAGATGACCCCATGACAAATGGCCTTCTTACTCGTGAGAAA  600

seq1  ACTAGGTCTAAAAAATTGTCGAAATCTGTGGTCACCAGTATATCCAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTCTAAAAAATTGTCGAAATCTGTGGTCACCAGTATATCCAGGAG  650

seq1  CTATCGATTTGTTTCCATTAAGAGCTGGAGTTTCAGTGCTCAGATAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGATTTGTTTCCATTAAGAGCTGGAGTTTCAGTGCTCAGATAGGAC  700

seq1  ATCAAG-AATGAAAAAGTCAGAACTAGGAGGTGTAGCTCAATGGGTAAAA  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAATGAAAAAGTCAGAACTAGGAGGTGTAGCTCAATGGGTAAAA  750

seq1  GTTTTTCCCACATGAATGAGGCTCTGGGTTCTACCCTCAGCACAGTAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCCACATGAATGAGGCTCTGGGTTCTACCCTCAGCACAGTAAGC  800

seq1  ATACACAAGTGCACATATGCACGTGCACATCTAAAAGATGCTTGTGTTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAGTGCACATATGCACGTGCACATCTAAAAGATGCTTGTGTTAG  850

seq1  TTCTTCGAGAATGTCACACAATGTATTTTGTTCACATTCATCCTCCCAC-  898
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTTCGAGAATGTCACACAATGTATTTTGTTCACATTCATCCTCCCACA  900

seq1  ACCCTCCCCCAACTCCTCCCAGGTCTACTCCACTTCCTTCGCTC-TCCAA  947
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCCTCCCCCAACTCCTCCCAGGTCTACTCCACTTCCTTCGCTCTTCCAA  950

seq1  CTTTGTGTCCTTTTAACAACAACTTAGTGACTCCAATTTGTGGTGCCCAC  997
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  CTTTGTGTCCTTTTAACAACAACTTAGTGACT-CAATTTGTGGTG-CCAC  998

seq1  ATATTCCT-GGGTGTGGCCATCCACCGAAGCATGGTCAACCTACCA-GGA  1045
      ||||| || ||||||||||||||||||||||||||||||||||||| |||
seq2  ATATTTCTGGGGTGTGGCCATCCACCGAAGCATGGTCAACCTACCAGGGA  1048

seq1  GCCACACCCT-GAAAGAAAATTGATTC-TTGTTCTCTC  1081
      ||| |||||| ||||||||| |||||| ||||||||||
seq2  GCCCCACCCTGGAAAGAAAA-TGATTCTTTGTTCTCTC  1085