BAC Information

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BAC

Clone NameB6Ng01-098P21
Chromosome9 (Build37)
Map Location 95,939,713 - 96,042,705
singlet/doubletdoublet
Overlap geneXrn1, Gk5
Upstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik
Downstream geneTfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098P21.bB6Ng01-098P21.g
ACCDH908913DH908914
length904662
definitionDH908913|Mus musculus domesticus DNA, BAC clone: B6Ng01-098P21, 5' end.DH908914|Mus musculus domesticus DNA, BAC clone: B6Ng01-098P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,041,804 - 96,042,705)(95,939,713 - 95,940,371)
sequence
gaattctagagagacagaaaataataatttcctgagacatggcttgcctc
atttgtccttatctgctcagcctgtctttccaccccggctcgacctcatg
ccacggggcactaagggtatctcccacatggctattatctcagtcactgc
atctctcctggacatccacacactcataggcattcacacttattatttat
atttactccgtgtggtatatgcattggtacacacccagtcagtcacctgc
acattgtacacagaggctagaagctaaatatttgtttgcttatttattta
tttatttatttatttttccaagacagagtttctctatgtaatagccttgg
ctatcttggaactccctttgtagaccaggccggccttgaactcacagaga
tgcctctgcctctcaagtgctgggactaaaggtatgcactatcacacctg
gctttcagtaatatcttatttagcattcttttttgttttgttttgttttt
gtttttgtttttcgagacagggtttctctgtgtagccctggctgtcctgg
aactcactttgtaggccaggctggcctcaaactcagaaatccacctgtct
ctgcctcccaagtgctgggagtaaaggcgtgcgccaccatgcccggctta
tttagcattcttgagtcaatttttttttaattctaaaatttgttcaacat
acagtttgaaaggaaaactggggtgctttcctaaattcactgtggaattt
tatgccggggctccctgatcttctccgaccgttccagcgttagtaagcgt
gctgccagagtgagcatacagcaacagcacacaaggtttttcatatgcca
aagatggatttaatcatggggcgtacatcagaaaaatgatcagggtacag
tggt
gaattcagtaagcatcttaatttttttaaaagaattgtttttttatgagt
acactgtagctgtcctcagacacaccagaagagggcattggatcctatca
cagatggttgtgatccatgggaattgaactcaggacttctagaatagctg
cccaagctcttaaccactgagccatctctccagcccaagcatcttaattt
ttaacagcgggaactcttcaaaagaaagagcagaggctggagagagagcc
cagtactagatggagttcttgtctagctgcactaggacaaacctcaaaag
aagagaaaaaaaactcagaaaatcaagaagaaaaatgaataagccaccta
agtctaacgtttgttctcctctcacccctctacctatgaatcatttccta
aaaaagaaaggaacacggatgcttaaagaaattctgaaaattgatagccc
tgacacaagagacagcaagaatgatatgaagaaatctgataatgaagcca
ctgtttcttctagaagagatgagcgtggagtgtcagcacatcctaagcca
agtaagaagctgagtaagttaactcccgttgccaatagtcagggtcatgt
ccaaaaagctcagtttcatatggttcccttgaaaaaatgtttatttgttt
agtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96041804_96042705
seq2: B6Ng01-098P21.b_50_953 (reverse)

seq1  ACCACTGTACCCTGATCATTTTTCTGATGTACGCCCCATGATTTAAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||| ||  ||
seq2  ACCACTGTACCCTGATCATTTTTCTGATGTACGCCCCATGATTAAATCCA  50

seq1  TCTTTGGCATATGAAAAACCTTGTGTGCTGTTGCTGTATGCTCACTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCATATGAAAAACCTTGTGTGCTGTTGCTGTATGCTCACTCTGG  100

seq1  CAGCACGCTTACTAACGCTGGAACGGTCGGAGAAGATCAGGGAGCCCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACGCTTACTAACGCTGGAACGGTCGGAGAAGATCAGGGAGCCCCGG  150

seq1  CAT-AAATTCCACAGTGAATTTAGG-AAGCACCCCAGTTTTCCTTTCAAA  198
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATAAAATTCCACAGTGAATTTAGGAAAGCACCCCAGTTTTCCTTTCAAA  200

seq1  CTGTATGTTGAACAAATTTTAGAATTAAAAAAAAATTGACTCAAGAATGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTTGAACAAATTTTAGAATTAAAAAAAAATTGACTCAAGAATGC  250

seq1  TAAATAAGCCGGGCATGGTGGCGCACGCCTTTACTCCCAGCACTTGGGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGCCGGGCATGGTGGCGCACGCCTTTACTCCCAGCACTTGGGAG  300

seq1  GCAGAGACAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGCCTACAAAGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGCCTACAAAGTG  350

seq1  AGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAA  400

seq1  AAACAAAAACAAAACAAAACAAAAAAGAATGCTAAATAAGATATTACTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACAAAACAAAACAAAAAAGAATGCTAAATAAGATATTACTGA  450

seq1  AAGCCAGGTGTGATAGTGCATACCTTTAGTCCCAGCACTTGAGAGGCAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGTGTGATAGTGCATACCTTTAGTCCCAGCACTTGAGAGGCAGA  500

seq1  GGCATCTCTGTGAGTTCAAGGCCGGCCTGGTCTACAAAGGGAGTTCCAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCTGTGAGTTCAAGGCCGGCCTGGTCTACAAAGGGAGTTCCAAG  550

seq1  ATAGCCAAGGCTATTACATAGAGAAACTCTGTCTTGGAAAAATAAATAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAAGGCTATTACATAGAGAAACTCTGTCTTGGAAAAATAAATAAA  600

seq1  TAAATAAATAAATAAGCAAACAAATATTTAGCTTCTAGCCTCTGTGTACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAGCAAACAAATATTTAGCTTCTAGCCTCTGTGTACA  650

seq1  ATGTGCAGGTGACTGACTGGGTGTGTACCAATGCATATACCACACGGAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGGTGACTGACTGGGTGTGTACCAATGCATATACCACACGGAGT  700

seq1  AAATATAAATAATAAGTGTGAATGCCTATGAGTGTGTGGATGTCCAGGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAATAATAAGTGTGAATGCCTATGAGTGTGTGGATGTCCAGGAG  750

seq1  AGATGCAGTGACTGAGATAATAGCCATGTGGGAGATACCCTTAGTGCCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGTGACTGAGATAATAGCCATGTGGGAGATACCCTTAGTGCCCC  800

seq1  GTGGCATGAGGTCGAGCCGGGGTGGAAAGACAGGCTGAGCAGATAAGGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATGAGGTCGAGCCGGGGTGGAAAGACAGGCTGAGCAGATAAGGAC  850

seq1  AAATGAGGCAAGCCATGTCTCAGGAAATTATTATTTTCTGTCTCTCTAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGCAAGCCATGTCTCAGGAAATTATTATTTTCTGTCTCTCTAGA  900

seq1  ATTC  902
      ||||
seq2  ATTC  904

seq1: chr9_95939713_95940371
seq2: B6Ng01-098P21.g_68_729

seq1  GAATTCAGTAAGCATCTTAATTTTTTTAAAAGAATTGTTTTTTTATGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGCATCTTAATTTTTTTAAAAGAATTGTTTTTTTATGAGT  50

seq1  ACACTGTAGCTGTCCTCAGACACACCAGAAGAGGGCATTGGATCCTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTAGCTGTCCTCAGACACACCAGAAGAGGGCATTGGATCCTATCA  100

seq1  CAGATGGTTGTGATCCATGGGAATTGAACTCAGGACTTCTAGAATAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTTGTGATCCATGGGAATTGAACTCAGGACTTCTAGAATAGCTG  150

seq1  CCCAAGCTCTTAACCACTGAGCCATCTCTCCAGCCCAAGCATCTTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTCTTAACCACTGAGCCATCTCTCCAGCCCAAGCATCTTAATTT  200

seq1  TTAACAGCGGGAACTCTTCAAAAGAAAGAGCAGAGGCTGGAGAGAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCGGGAACTCTTCAAAAGAAAGAGCAGAGGCTGGAGAGAGAGCC  250

seq1  CAGTACTAGATGGAGTTCTTGTCTAGCTGCACTAGGACAAACCTCAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTAGATGGAGTTCTTGTCTAGCTGCACTAGGACAAACCTCAAAAG  300

seq1  AAGAGAAAAAAAACTCAGAAAATCAAGAAGAAAAATGAATAAGCCACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAAAAACTCAGAAAATCAAGAAGAAAAATGAATAAGCCACCTA  350

seq1  AGTCTAACGTTTGTTCTCCTCTCACCCCTCTACCTATGAATCATTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAACGTTTGTTCTCCTCTCACCCCTCTACCTATGAATCATTTCCTA  400

seq1  AAAAAGAAAGGAACACGGATGCTTAAAGAAATTCTGAAAATTGATAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGGAACACGGATGCTTAAAGAAATTCTGAAAATTGATAGCCC  450

seq1  TGACACAAGAGACAGCAAGAATGATATGAAGAAATCTGATAATGAAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAAGAGACAGCAAGAATGATATGAAGAAATCTGATAATGAAGCCA  500

seq1  CTGTTTCTTCTAGAAGAGATGAGCGTGGAGTGTCAGCACATCCTAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTTCTAGAAGAGATGAGCGTGGAGTGTCAGCACATCCTAAGCCA  550

seq1  AGTAAGAAGCTGAGTAAGTTAACTCCCGTTGCCAATAGTCAGGGTCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAGCTGAGTAAGTTAACTCCCGTTGCCAATAGTCAGGGTCATGT  600

seq1  CC-AAAAGCTCAG-TTCATATGGTTCCCTTG-AAAAATGTTTATTTGTTT  647
      || |||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CCAAAAAGCTCAGTTTCATATGGTTCCCTTGAAAAAATGTTTATTTGTTT  650

seq1  AGTGTGTGTGTG  659
      ||||||||||||
seq2  AGTGTGTGTGTG  662