BAC Information

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BAC

Clone NameB6Ng01-099B24
Chromosome9 (Build37)
Map Location 39,454,337 - 39,616,198
singlet/doubletdoublet
Overlap geneOlfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969
Upstream geneOlfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960
Downstream geneOlfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099B24.bB6Ng01-099B24.g
ACCDH909005DH909006
length1,113463
definitionDH909005|Mus musculus domesticus DNA, BAC clone: B6Ng01-099B24, 5' end.DH909006|Mus musculus domesticus DNA, BAC clone: B6Ng01-099B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,454,337 - 39,455,449)(39,615,730 - 39,616,198)
sequence
gaattcaccttgctgggcatccctgagacagagggcctggaaaatgccct
gctttttctgttttcaacaatgtatgcctgtgccctgctgggaaactttc
tcattcttactgcaatcactacctccccaagactacacacacccatgtac
tttttcttgggaaacctctccatctttgacttaggtttctgttccactac
agctccaaagatgttgtcatatctctcaggatggggtggagggatctctt
ttcagggatgtgttgtacaacacttcttctatcattgtctgggttgcaca
ttgtgtttcttgtacacagtgatggcctatgaccgctttgttgccatatg
cttccctttgagatacacaatcatcatgaaccacagagtatgctgtgtct
tggccacagggacctggatgagtggctgtgtgcatgccaccatcctaact
tccctcactttccagttgccctactgtggccccagtgaggtgagttatta
cttctgtgacatgcctgcagtgttactgctagcctgtgaagattcctctc
tagcacagagggtaggtttcacaaatgttggtcttttatctctcatttgt
ttctttctcattattgtatcctacactcgaattgggatctccatctcaaa
aatccgctcaacagaaggcaggcagagagcgttctccacctgcagtgccc
acctcacagccatcatgtgtgtctatggacctgtcatcgtcatctaccta
cagcccaaccctagtccattgcttagtgcgattattcagattttgcacaa
tctttgtgacacccaccatcaacccattgatctacagcctgaggaacaag
gatgtgaaagcagccctgaggcatgtatttctttaagaggtgtcttagcc
tggaagtaatgaaaacagctaagtgtttgctgaagagtgtctgattcagt
ttactttgagtctatgacttactttcacagggacacatgtatctatattt
ccagggcaatatttaaatttgaaatgtacatatatcattgcccacttcct
tcaacattggaagatacatgtttatttaaatttctctgtttatgaaggac
ggttgatgaaatg
tcgtggcatgattgtaagatgactctatgcaacttcccatctgaagataa
tctctgaagtatatgaggccattttcactgctcgtcttctgcccctgttt
aatttacttctctgaaataaataataatttgttatcattataaaatattt
tcttttatatgttcctatattatttcaagagtaatatgaatttcatagaa
gagaatggagacaaacatatttttaaccttagtaaatttgacagtaaata
ttgtttgcagaaatagagacaaaattagtattgtagttgctttatttaat
gtatttttgatgaaaataatttcaataaaagtttaggggaaaaattcagg
gagtactgtagcaaggagaggaaatggaccagttaatatatagggattgc
ataatggtgacacctttctttcttttcttctcttctcttctcttctcttc
tcttctcttatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_39454337_39455449
seq2: B6Ng01-099B24.b_46_1158

seq1  GAATTCACCTTGCTGGGCATCCCTGAGACAGAGGGCCTGGAAAATGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTGCTGGGCATCCCTGAGACAGAGGGCCTGGAAAATGCCCT  50

seq1  GCTTTTTCTGTTTTCAACAATGTATGCCTGTGCCCTGCTGGGAAACTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCTGTTTTCAACAATGTATGCCTGTGCCCTGCTGGGAAACTTTC  100

seq1  TCATTCTTACTGCAATCACTACCTCCCCAAGACTACACACACCCATGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTACTGCAATCACTACCTCCCCAAGACTACACACACCCATGTAC  150

seq1  TTTTTCTTGGGAAACCTCTCCATCTTTGACTTAGGTTTCTGTTCCACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGGGAAACCTCTCCATCTTTGACTTAGGTTTCTGTTCCACTAC  200

seq1  AGCTCCAAAGATGTTGTCATATCTCTCAGGATGGGGTGGAGGGATCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAAGATGTTGTCATATCTCTCAGGATGGGGTGGAGGGATCTCTT  250

seq1  TTCAGGGATGTGTTGTACAACACTTCTTCTATCATTGTCTGGGTTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGATGTGTTGTACAACACTTCTTCTATCATTGTCTGGGTTGCACA  300

seq1  TTGTGTTTCTTGTACACAGTGATGGCCTATGACCGCTTTGTTGCCATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTCTTGTACACAGTGATGGCCTATGACCGCTTTGTTGCCATATG  350

seq1  CTTCCCTTTGAGATACACAATCATCATGAACCACAGAGTATGCTGTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTTGAGATACACAATCATCATGAACCACAGAGTATGCTGTGTCT  400

seq1  TGGCCACAGGGACCTGGATGAGTGGCTGTGTGCATGCCACCATCCTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACAGGGACCTGGATGAGTGGCTGTGTGCATGCCACCATCCTAACT  450

seq1  TCCCTCACTTTCCAGTTGCCCTACTGTGGCCCCAGTGAGGTGAGTTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCACTTTCCAGTTGCCCTACTGTGGCCCCAGTGAGGTGAGTTATTA  500

seq1  CTTCTGTGACATGCCTGCAGTGTTACTGCTAGCCTGTGAAGATTCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGACATGCCTGCAGTGTTACTGCTAGCCTGTGAAGATTCCTCTC  550

seq1  TAGCACAGAGGGTAGGTTTCACAAATGTTGGTCTTTTATCTCTCATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGAGGGTAGGTTTCACAAATGTTGGTCTTTTATCTCTCATTTGT  600

seq1  TTCTTTCTCATTATTGTATCCTACACTCGAATTGGGATCTCCATCTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCATTATTGTATCCTACACTCGAATTGGGATCTCCATCTCAAA  650

seq1  AATCCGCTCAACAGAAGGCAGGCAGAGAGCGTTCTCCACCTGCAGTGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGCTCAACAGAAGGCAGGCAGAGAGCGTTCTCCACCTGCAGTGCCC  700

seq1  ACCTCACAGCCATCATGTGTGTCTATGGACCTGTCATCGTCATCTACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACAGCCATCATGTGTGTCTATGGACCTGTCATCGTCATCTACCTA  750

seq1  CAGCCCAACCCTAGTCCATTGCTTAGTGCGATTATTCAGATTTTGCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAACCCTAGTCCATTGCTTAGTGCGATTATTCAGATTTTGCACAA  800

seq1  TC-TTGTGACACCCACCATCAACCCATTGATCTACAGCCTGAGGAACAAG  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGACACCCACCATCAACCCATTGATCTACAGCCTGAGGAACAAG  850

seq1  GATGTGAAAGCAGCCCTGAGGCATGTATTTC-TTAAGAGGTGTCTTAGCC  898
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GATGTGAAAGCAGCCCTGAGGCATGTATTTCTTTAAGAGGTGTCTTAGCC  900

seq1  TGGAAGTAAATGAAAACAGCTAAGTGTTTGCTGAAGAGTGTCTGATTCAG  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGT-AATGAAAACAGCTAAGTGTTTGCTGAAGAGTGTCTGATTCAG  949

seq1  TTTACTTTGAGTCTATGACTTAC-TTCACA-GGACACATGTTATCTATAA  996
      ||||||||||||||||||||||| |||||| ||||||||| |||||||| 
seq2  TTTACTTTGAGTCTATGACTTACTTTCACAGGGACACATG-TATCTATAT  998

seq1  TTCCAGGGC-ATATT--AAATTGAAATGTACATTATATCAATTTGCCACT  1043
      ||||||||| |||||  || |||||||||||| |||||| |||  |||||
seq2  TTCCAGGGCAATATTTAAATTTGAAATGTACA-TATATC-ATTGCCCACT  1046

seq1  TCCTTCACCATTTGAAGATACATGTTTATTTTATATTTCTCTGTTTTATG  1093
      ||||||| |||| ||||||||||||||| |||| ||||||||| ||||||
seq2  TCCTTCAACATTGGAAGATACATGTTTA-TTTAAATTTCTCTG-TTTATG  1094

seq1  ATGTAACGTGTGATGAAATG  1113
      | |  |||  ||||||||||
seq2  AAG-GACGGTTGATGAAATG  1113

seq1: chr9_39615730_39616198
seq2: B6Ng01-099B24.g_70_538 (reverse)

seq1  AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAAAAGAAAGAAAG  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAAAAGAAAGAAAG  50

seq1  GTGTCACCATTATGCAATCCCTATATATTAACTGGTCCATTTCCTCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACCATTATGCAATCCCTATATATTAACTGGTCCATTTCCTCTCCT  100

seq1  TGCTACAGTACTCCCTGAATTTTTCCCCTAAACTTTTATTGAAATTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGTACTCCCTGAATTTTTCCCCTAAACTTTTATTGAAATTATTT  150

seq1  TCATCAAAAATACATTAAATAAAGCAACTACAATACTAATTTTGTCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAAAATACATTAAATAAAGCAACTACAATACTAATTTTGTCTCTA  200

seq1  TTTCTGCAAACAATATTTACTGTCAAATTTACTAAGGTTAAAAATATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAAACAATATTTACTGTCAAATTTACTAAGGTTAAAAATATGTT  250

seq1  TGTCTCCATTCTCTTCTATGAAATTCATATTACTCTTGAAATAATATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCATTCTCTTCTATGAAATTCATATTACTCTTGAAATAATATAGG  300

seq1  AACATATAAAAGAAAATATTTTATAATGATAACAAATTATTATTTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATAAAAGAAAATATTTTATAATGATAACAAATTATTATTTATTTC  350

seq1  AGAGAAGTAAATTAAACAGGGGCAGAAGACGAGCAGTGAAAATGGCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTAAATTAAACAGGGGCAGAAGACGAGCAGTGAAAATGGCCTCA  400

seq1  TATACTTCAGAGATTATCTTCAGATGGGAAGTTGCATAGAGTCATCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCAGAGATTATCTTCAGATGGGAAGTTGCATAGAGTCATCTTAC  450

seq1  AATCATGCCACGAGAATTC  469
      |||||||||||||||||||
seq2  AATCATGCCACGAGAATTC  469