BAC Information

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BAC

Clone NameB6Ng01-100F15
Chromosome9 (Build37)
Map Location 50,003,534 - 50,004,608
singlet/doubletsinglet
Overlap genenone
Upstream geneEG235327, Drd2, Ankk1, Ttc12, Ncam1, EG667975
Downstream geneLOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100F15.bB6Ng01-100F15.g
ACCDH909876DH909877
length1,0621,153
definitionDH909876|Mus musculus domesticus DNA, BAC clone: B6Ng01-100F15, 5' end.DH909877|Mus musculus domesticus DNA, BAC clone: B6Ng01-100F15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctagagatatcaaggtattggagctaaagtgactaaggttcaagt
tcctgataaaagatagatctgaccatcgaccctcactctcctcttcagtg
atctgtagaagccactgctcaggcagttcacaagccaagcaataccagac
cgttagatatataatttgacctcactctaatgagaattccatgagatgtt
atgatcttataccaataaagctttgactgttcagaatgtgaagttccaaa
tagcagtggctaaagcacatgaaggtttattcttccaaaggcaagaagct
cagacagagcaaggcagcccagggctggtgtgaagtaccttcagactcat
cagggccaccatgaccctagcattcattcagacttttttcagcttttatt
attctcctacttctcttctagtccaaagtggcctcacagatctagccagg
acactgaagttctgaactgtgaggaggagctagaaaacaactaatgttct
gatcaaagtagccttttaagtattcttacttggtcatgtacactgtatcg
tactgctggcccccacccctctgtctctgtttctgtctctttctaggtct
ccatctcactctctgtctcggtctctgtcctctttcctctttctcctcct
ggtcctggtagctcaatctctacctctctctattcccctgagtaattggc
tgtcatcagttttacttaaccaaaagttttaaattagaaaggcttacaca
acaaaggcaggcatatgtgaatattagctcctcttggagcaaccagattt
tggggtacagaattaagtagttgaatacaagtagcaccagaccaaccccc
aagtttagtgtagcacattctgttgttccagtgagtttttctaactaagc
cttccctgtgtctttctttgatggctgtgttggtaattggggtgttgaaa
ggatccagttccacactaggaacaacaaggtgctgactctgaacttaagc
cactctctatcaaaatgcacctgactttctacatccgtaagcccacttag
ataatttaatat
gaattctcacctgaggagtaccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggttaagatcaaaaattcaggtgacaac
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgtaagcttgtacaaccactctggaaatcagtctgacggttcctca
gaaaatgggacatagtactaccggaggatcctgcaatacctctcctgggc
atgtatccagaagatgttccaactagtaataaggacacatgttccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatatagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaagtcctaagcaa
atgaatggacatggacggtatcatcccgagtgaggtaacccaatcacaaa
agaactcacatgatatgtactcactgataagtggatattagcccagaaac
ttagaatgcccaagttacaggttgcaaaacacatgaaactcaagaatgaa
gactaaaatgtggtcactttgcccctttttagaattgtgggaagaaaaaa
aaaacacccatggaaggagttacagagacaaagtttggagctgagacgaa
aggatggaccatctagagactgctgcacctgggtacccatcccataatca
gcctccaaacgcagacaccatcgcatacgccagcaagattttgctgaaag
gaccctgatatagctgtctcttgtgaggctttggcaggcctagcaaacac
agaagtggatgctcacagtcagctatggatggaacacagggccccaatgg
aaggagctagagaagtacccaggagctaaagggtctgcaacctttaggtg
gacaacaatatgactaacagaccctaccctgccccagagctgggtctatc
tgctatgtgcgaagatggctactcaaggcatcttgggaagagagtccttt
cgcttgcaactttatatgcctagataggaaatactgtgcccgaatgtgag
tgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50003534_50004608
seq2: B6Ng01-100F15.b_46_1107 (reverse)

seq1  ATATAAAATTATCTAAAGTGGGCTTACGGGATGTAGAAAAGTCAGGTGCA  50
      |||| ||||||||| |||||||||||| |||||||| |||||||||||||
seq2  ATATTAAATTATCT-AAGTGGGCTTAC-GGATGTAG-AAAGTCAGGTGCA  47

seq1  TTTTTGATAGAAGAGTGGCTTAAAGGTTCAGAGTCAAGCACCTTGTTGTT  100
       ||||||||| ||||||||||||  |||||||||| ||||||||||||||
seq2  -TTTTGATAG-AGAGTGGCTTAA--GTTCAGAGTC-AGCACCTTGTTGTT  92

seq1  CCTTAGTGTGGGAACTGGATCCTTTCAACACCCCAAATTACCAACACAGC  150
      || |||||| |||||||||||||||||||||||| |||||||||||||||
seq2  CC-TAGTGT-GGAACTGGATCCTTTCAACACCCC-AATTACCAACACAGC  139

seq1  CATCAAAGAAAGACACAGGGAAGGCTTAGTTAAGAAAAACTCAACTGGAA  200
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  CATCAAAGAAAGACACAGGGAAGGCTTAGTT-AGAAAAACTC-ACTGGAA  187

seq1  CAACAGAATGTGCTACACTAAACTTGGGGGTTGGTCTGGTGCTACTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAATGTGCTACACTAAACTTGGGGGTTGGTCTGGTGCTACTTGTA  237

seq1  TTCAACTACTTAATTCTGTACCCCAAAATCTGGTTGCTCCAAGAGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTACTTAATTCTGTACCCCAAAATCTGGTTGCTCCAAGAGGAGCT  287

seq1  AATATTCACATATGCCTGCCTTTGTTGTGTAAGCCTTTCTAATTTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCACATATGCCTGCCTTTGTTGTGTAAGCCTTTCTAATTTAAAAC  337

seq1  TTTTGGTTAAGTAAAACTGATGACAGCCAATTACTCAGGGGAATAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTAAGTAAAACTGATGACAGCCAATTACTCAGGGGAATAGAGAG  387

seq1  AGGTAGAGATTGAGCTACCAGGACCAGGAGGAGAAAGAGGAAAGAGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGATTGAGCTACCAGGACCAGGAGGAGAAAGAGGAAAGAGGACA  437

seq1  GAGACCGAGACAGAGAGTGAGATGGAGACCTAGAAAGAGACAGAAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCGAGACAGAGAGTGAGATGGAGACCTAGAAAGAGACAGAAACAGA  487

seq1  GACAGAGGGGTGGGGGCCAGCAGTACGATACAGTGTACATGACCAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGGGTGGGGGCCAGCAGTACGATACAGTGTACATGACCAAGTAA  537

seq1  GAATACTTAAAAGGCTACTTTGATCAGAACATTAGTTGTTTTCTAGCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTAAAAGGCTACTTTGATCAGAACATTAGTTGTTTTCTAGCTCC  587

seq1  TCCTCACAGTTCAGAACTTCAGTGTCCTGGCTAGATCTGTGAGGCCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGTTCAGAACTTCAGTGTCCTGGCTAGATCTGTGAGGCCACTT  637

seq1  TGGACTAGAAGAGAAGTAGGAGAATAATAAAAGCTGAAAAAAGTCTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAGAAGAGAAGTAGGAGAATAATAAAAGCTGAAAAAAGTCTGAAT  687

seq1  GAATGCTAGGGTCATGGTGGCCCTGATGAGTCTGAAGGTACTTCACACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTAGGGTCATGGTGGCCCTGATGAGTCTGAAGGTACTTCACACCA  737

seq1  GCCCTGGGCTGCCTTGCTCTGTCTGAGCTTCTTGCCTTTGGAAGAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGCTGCCTTGCTCTGTCTGAGCTTCTTGCCTTTGGAAGAATAAA  787

seq1  CCTTCATGTGCTTTAGCCACTGCTATTTGGAACTTCACATTCTGAACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGTGCTTTAGCCACTGCTATTTGGAACTTCACATTCTGAACAGT  837

seq1  CAAAGCTTTATTGGTATAAGATCATAACATCTCATGGAATTCTCATTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTTATTGGTATAAGATCATAACATCTCATGGAATTCTCATTAGA  887

seq1  GTGAGGTCAAATTATATATCTAACGGTCTGGTATTGCTTGGCTTGTGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTCAAATTATATATCTAACGGTCTGGTATTGCTTGGCTTGTGAAC  937

seq1  TGCCTGAGCAGTGGCTTCTACAGATCACTGAAGAGGAGAGTGAGGGTCGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGCAGTGGCTTCTACAGATCACTGAAGAGGAGAGTGAGGGTCGA  987

seq1  TGGTCAGATCTATCTTTTATCAGGAACTTGAACCTTAGTCACTTTAGCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGATCTATCTTTTATCAGGAACTTGAACCTTAGTCACTTTAGCTC  1037

seq1  CAATACCTTGATATCTCTAGAATTC  1075
      |||||||||||||||||||||||||
seq2  CAATACCTTGATATCTCTAGAATTC  1062