BAC Information

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BAC

Clone NameB6Ng01-100G06
Chromosome9 (Build37)
Map Location 30,149,545 - 30,368,124
singlet/doubletdoublet
Overlap geneSnx19, LOC666478
Upstream geneHnt
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100G06.bB6Ng01-100G06.g
ACCDH909906DH909907
length9311,130
definitionDH909906|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G06, 5' end.DH909907|Mus musculus domesticus DNA, BAC clone: B6Ng01-100G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,367,196 - 30,368,124)(30,149,545 - 30,150,701)
sequence
gaattcaaatgactgctcctatagggcttagtgtagggagaaagcgacta
ctcctatagggcttagtgtaggggaaagcaaagtatgaggaggaggagca
gaaatgaaaggaagggaagcagaacctcacatctcttacttatgagcaaa
ccttcatcttgcacatccatagatttgccaagggttgccacccattgatc
agataagatgggaataatcagaaattgattaagatgaaagaaaagatgaa
agaattgggataagaaaaggaaggaaaatgagaaaaaaattaacccatgt
ctagtttcatgaattttaagtgataagataaacaacatacacagctctgt
gtaggctgaggcaagtgagcagacagccatctcaaggccaggatgccttg
agactgcctaagaaacatttgcaggatagaaatgaagtaaaaaaatgctg
cagttgggatatttctatttcacttctctatgaccaacattatctcgttc
tctagaattatcgactgtggataagcctggtaatttgaattgtaaatatg
ttacagtcacagagtccaaaggtttttccaaggtaccattcaatatttct
agagaaattccaaggaacatgaattggtttccactgatattattcttttc
tacccatcacctctagtatgagaagccattcctgactcagttaaagcaag
atttcccaactgtcccttacacatggaaactgcaaaagactaactggtaa
gtaagaggcttctaaggatgagattcagctatccaaacgtttcttagcag
tcccatgaccaaagtatccagtgtttttacaaataggggtcttaaaacta
agttctgatgggtatatattatatatatatatatatatatatacatatat
atatatttatatatatatattttaggacgtc
gaattcataattctgagaagacagtgaagtaagaagtccagctagtttct
ggaatgaatatggagtccaagccttatatgctatttaagaacaccaacaa
aaaccccaaattgctcttacttttaatcagtaactaatactggaaacttt
tcagagttacagattttatgaacattaatggcaatggcttgtgataggaa
aataaacaagtgtcaagtattagaatcctttatgggaattagatgacagt
agtgtctgaaggaaattcgtaaatacatcacagtggatggagggtgaact
cttatgctgatgtgaaactttattttctaggggatacttcaaataaaagt
tctcccagaaccacttcaagttataaaatgtttatataatatgcttggaa
tgattaattatattattataaaatttaggcacacatagatgttcatgcca
tgggcaaggctaggaaatacactaaaatgctaagagagttttccaataga
tgagactgcatatttttatcaccttaataatgacattttctaaaatttct
ttcagtggataaaagtagtttacaaaaagtatgcctagtataaattcctg
tccacgttatttccaaggccattggcaacccgtattcaatggatttgcct
aaccttgttttccacaaaatccaatataataccgatcacatatttcctta
gcgcccctgagtcatgccctctttctttccaaatcaggttttctcaaatt
tgggttttctatgtgtgctcaaggtagcaaaacctgttgaactatgtcaa
agttggcattctaatgaatttcaacctctgcttgaatacacataaagcaa
gagtagtccataaaacattacattttctctctccaaaaaacaaaaacaaa
caatcaaaaggctttgccatgcaactcttaaagcatatcagtgagatatg
aaaggcagaccactccatctagaaactgactaagtttactgtattaacta
cagcagcactagcacagtttgcagtactcccacaaatctgcacctccagg
ttgcaagctgttcctgatcttcacttcctgacaaccccaatcaggaaaaa
ggagataagtttatggttgtctccagcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_30367196_30368124
seq2: B6Ng01-100G06.b_46_976 (reverse)

seq1  GACTTCCT-AAATATATATATATATATATATATATATGTATATATATATA  49
      ||| |||| ||||||||||||||| |||||||||||||||||||||||||
seq2  GACGTCCTAAAATATATATATATAAATATATATATATGTATATATATATA  50

seq1  TATATATATATAATATATACCCATCAGAACTTAGTTTTAAGA-CCCTATT  98
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATATATATATAATATATACCCATCAGAACTTAGTTTTAAGACCCCTATT  100

seq1  TGTAAAAACACTGGATACTTTGGTCATGGGACTGCTAAGAAACGTTTGGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAACACTGGATACTTTGGTCATGGGACTGCTAAGAAACGTTTGGA  150

seq1  TAGCTGAATCTCATCCTTAGAAGCCTCTTACTTACCAGTTAGTCTTTTGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAATCTCATCCTTAGAAGCCTCTTACTTACCAGTTAGTCTTTTGC  200

seq1  AGTTTCCATGTGTAAGGGACAGTTGGGAAATCTTGCTTTAACTGAGTCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATGTGTAAGGGACAGTTGGGAAATCTTGCTTTAACTGAGTCAG  250

seq1  GAATGGCTTCTCATACTAGAGGTGATGGGTAGAAAAGAATAATATCAGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTTCTCATACTAGAGGTGATGGGTAGAAAAGAATAATATCAGTG  300

seq1  GAAACCAATTCATGTTCCTTGGAATTTCTCTAGAAATATTGAATGGTACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAATTCATGTTCCTTGGAATTTCTCTAGAAATATTGAATGGTACC  350

seq1  TTGGAAAAACCTTTGGACTCTGTGACTGTAACATATTTACAATTCAAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAACCTTTGGACTCTGTGACTGTAACATATTTACAATTCAAATT  400

seq1  ACCAGGCTTATCCACAGTCGATAATTCTAGAGAACGAGATAATGTTGGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTTATCCACAGTCGATAATTCTAGAGAACGAGATAATGTTGGTC  450

seq1  ATAGAGAAGTGAAATAGAAATATCCCAACTGCAGCATTTTTTTACTTCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAGTGAAATAGAAATATCCCAACTGCAGCATTTTTTTACTTCAT  500

seq1  TTCTATCCTGCAAATGTTTCTTAGGCAGTCTCAAGGCATCCTGGCCTTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCTGCAAATGTTTCTTAGGCAGTCTCAAGGCATCCTGGCCTTGA  550

seq1  GATGGCTGTCTGCTCACTTGCCTCAGCCTACACAGAGCTGTGTATGTTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGTCTGCTCACTTGCCTCAGCCTACACAGAGCTGTGTATGTTGT  600

seq1  TTATCTTATCACTTAAAATTCATGAAACTAGACATGGGTTAATTTTTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTATCACTTAAAATTCATGAAACTAGACATGGGTTAATTTTTTTC  650

seq1  TCATTTTCCTTCCTTTTCTTATCCCAATTCTTTCATCTTTTCTTTCATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCCTTCCTTTTCTTATCCCAATTCTTTCATCTTTTCTTTCATCT  700

seq1  TAATCAATTTCTGATTATTCCCATCTTATCTGATCAATGGGTGGCAACCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAATTTCTGATTATTCCCATCTTATCTGATCAATGGGTGGCAACCC  750

seq1  TTGGCAAATCTATGGATGTGCAAGATGAAGGTTTGCTCATAAGTAAGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAATCTATGGATGTGCAAGATGAAGGTTTGCTCATAAGTAAGAGA  800

seq1  TGTGAGGTTCTGCTTCCCTTCCTTTCATTTCTGCTCCTCCTCCTCATACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTTCTGCTTCCCTTCCTTTCATTTCTGCTCCTCCTCCTCATACT  850

seq1  TTGCTTTCCCCTACACTAAGCCCTATAGGAGTAGTCGCTTTCTCCCTACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCCCCTACACTAAGCCCTATAGGAGTAGTCGCTTTCTCCCTACA  900

seq1  CTAAGCCCTATAGGAGCAGTCATTTGAATTC  929
      |||||||||||||||||||||||||||||||
seq2  CTAAGCCCTATAGGAGCAGTCATTTGAATTC  931

seq1: chr9_30149545_30150701
seq2: B6Ng01-100G06.g_68_1197

seq1  GAATTCATAATTCTGAGAAGACAGTGAAGTAAGAAGTCCAGCTAGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTCTGAGAAGACAGTGAAGTAAGAAGTCCAGCTAGTTTCT  50

seq1  GGAATGAATATGGAGTCCAAGCCTTATATGCTATTTAAGAACACCAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAATATGGAGTCCAAGCCTTATATGCTATTTAAGAACACCAACAA  100

seq1  AAACCCCAAATTGCTCTTACTTTTAATCAGTAACTAATACTGGAAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAAATTGCTCTTACTTTTAATCAGTAACTAATACTGGAAACTTT  150

seq1  TCAGAGTTACAGATTTTATGAACATTAATGGCAATGGCTTGTGATAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTACAGATTTTATGAACATTAATGGCAATGGCTTGTGATAGGAA  200

seq1  AATAAACAAGTGTCAAGTATTAGAATCCTTTATGGGAATTAGATGACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAGTGTCAAGTATTAGAATCCTTTATGGGAATTAGATGACAGT  250

seq1  AGTGTCTGAAGGAAATTCGTAAATACATCACAGTGGATGGAGGGTGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGAAGGAAATTCGTAAATACATCACAGTGGATGGAGGGTGAACT  300

seq1  CTTATGCTGATGTGAAACTTTATTTTCTAGGGGATACTTCAAATAAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCTGATGTGAAACTTTATTTTCTAGGGGATACTTCAAATAAAAGT  350

seq1  TCTCCCAGAACCACTTCAAGTTATAAAATGTTTATATAATATGCTTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGAACCACTTCAAGTTATAAAATGTTTATATAATATGCTTGGAA  400

seq1  TGATTAATTATATTATTATAAAATTTAGGCACACATAGATGTTCATGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATTATATTATTATAAAATTTAGGCACACATAGATGTTCATGCCA  450

seq1  TGGGCAAGGCTAGGAAATACACTAAAATGCTAAGAGAGTTTTCCAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAGGCTAGGAAATACACTAAAATGCTAAGAGAGTTTTCCAATAGA  500

seq1  TGAGACTGCATATTTTTATCACCTTAATAATGACATTTTCTAAAATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGCATATTTTTATCACCTTAATAATGACATTTTCTAAAATTTCT  550

seq1  TTCAGTGGATAAAAGTAGTTTACAAAAAGTATGCCTAGTATAAATTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGATAAAAGTAGTTTACAAAAAGTATGCCTAGTATAAATTCCTG  600

seq1  TCCACGTTATTTCCAAGGCCATTGGCAACCCGTATTCAATGGATTTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTTATTTCCAAGGCCATTGGCAACCCGTATTCAATGGATTTGCCT  650

seq1  AACCTTGTTTTCCACAAAATCCAATATAATACCGATCACATATTTCCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTTTTCCACAAAATCCAATATAATACCGATCACATATTTCCTTA  700

seq1  GCGCCCCTGAGTCATGCCCTCTTTCTTTCCAAATCAGGTTTTCTCAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCCTGAGTCATGCCCTCTTTCTTTCCAAATCAGGTTTTCTCAAATT  750

seq1  T-GGTTTTCTATGTGTGCTCAAGGTAGCAAAACCTGTTGAACTATGTCAA  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTCTATGTGTGCTCAAGGTAGCAAAACCTGTTGAACTATGTCAA  800

seq1  AGTTGGCATTCTAATGAA-TTCAACCTCTGCTTGAATACACATAAAGCAA  848
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTTGGCATTCTAATGAATTTCAACCTCTGCTTGAATACACATAAAGCAA  850

seq1  GAGTAGTCCATAAAACATTACATTTTCTCTCTCCAAAAAACAAAAACAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTCCATAAAACATTACATTTTCTCTCTCCAAAAAACAAAAACAAA  900

seq1  CAATCAAAAGGCTTTGCCATGCAACTCTTAAAGCATATCAGTTGAGATAT  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  CAATCAAAAGGCTTTGCCATGCAACTCTTAAAGCATATCAG-TGAGATA-  948

seq1  TGAAAGGCCAGACCAACTCCATCTTAGAAAACCTGACCTAAGGTTTAACT  998
      ||||||| |||||| |||||||| ||||||  |||| |||| |||||   
seq2  TGAAAGG-CAGACC-ACTCCATC-TAGAAA--CTGA-CTAA-GTTTA--C  989

seq1  TGTATTAACTAACAAGCCAGCACCTAGCACCAGTTTGCAGGTTACTTCCC  1048
      |||||||||| |||   ||||| |||||| ||||||||||  ||||  ||
seq2  TGTATTAACT-ACA--GCAGCA-CTAGCA-CAGTTTGCAG--TACT--CC  1030

seq1  AACAAATCTGCACCTCCAGGTTGCAAGCCTGTCCCTGATACTTCACTTCC  1098
       |||||||||||||||||||||||||| |||| |||||| ||||||||||
seq2  CACAAATCTGCACCTCCAGGTTGCAAG-CTGTTCCTGAT-CTTCACTTCC  1078

seq1  TAGCAACCACCAATCAGGAGAAAAGCAGGAGTTAAGTTTATGGTTTGGCT  1148
      |  ||||| |||||||||| ||    ||||| ||||||||||| ||| ||
seq2  TGACAACC-CCAATCAGGAAAA----AGGAGATAAGTTTATGG-TTGTCT  1122

seq1  CCCAGCACC  1157
       ||||||||
seq2  -CCAGCACC  1130