BAC Information

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BAC

Clone NameB6Ng01-100H17
Chromosome9 (Build37)
Map Location 24,616,252 - 24,617,375
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20
Downstream geneLOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100H17.bB6Ng01-100H17.g
ACCDH909968DH909969
length1,0341,117
definitionDH909968|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H17, 5' end.DH909969|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtatcccatttttaatagagttactttgttt
tctggagtccaacttcttaattcttaagttctttatatatattggaaatt
aggcccctatcagatttagaattggtaaaactcttttcccaatctttggt
tgccatcttattgacagtgtcctttgccttacagaagctttgcaatttta
tgaggtcccatttgttaattcttggttttacagtacaaggcattggtatt
ctgttagagaattttctcctgtgcccatatgttcgaggctcttctcgact
ttctcctctataagttgcagtgtctctggttttatgtggagttccttgat
ccacttagacttgagctttgtacaaggaggtaagaatggatcaatgtgca
ttcttctacatgataaccaccagttgagacagcaccatttgttgaaaatg
ctgtcttctttccactggatggttttagttcctttgtcaaagatcaagtg
accataggtgtgtgggttcatttctgtgtcttctattctatttcattgat
ctacacgtttgtcgctgtactagtaccatgcagtttgtttgtttgtttgt
tttttatcacaattgctctgtagtacagcttgaggtcaggcatggtgatt
ccaccagaggctctttttattgttgagaatagtttttgctatcctaggtt
tttttgttattccagatgaatttgaaaattgcctttttctaactcagtga
agaattgagttggaattttgatggagattgcattgaaacctgtagattgc
ttttggcaacatagccatttttactaaattagtcttgcctatccatgatc
atgggagatctctccatcttctgagatcttcttcaattctttcttcagaa
acttgaagttcttatcatacagatctttcatttcttagagtcacgccaca
gtaatttaatatatttgtgactatgtaaggtgtgttccctaatttcttct
cagccggtttatcctttgatagaaggaaaccact
gaattcatattgccaggcgagctgctcgtttgaaataagctcagaactct
gccttagagcagctcttgagggagaatgtgatgaagcatcttaaaactga
tgctgttgaaagctggcttttctggacagcgagaacaaaagcctgccaga
gattgaatatttgcaacggaaggaaaggtcccatctgtgtcgcttgctct
tgattctagggataggacccaagattctttcatctgggtggctgtgccca
gagcctgtggcaccattccagtggtcagcctggaagcaaggcaaatcgat
gcatggtgccaggtcagggcttgatggcagtcagtgtgccaagaagatgt
gagtaggcatccctggagggccaaggatgttcaagaccccaggagctcat
ctctatcctttagagcctgactagggaaaggcagcgaagaagagatgaag
ggcgactttatcctcacacataattttatgacctatccaaaatatttttt
cttttggaaattgaaaataaggataaatccagattacggaagaacaatat
aagattgggaagggcatctaatgccttgtagaagtggagagcaggcaaga
aagactgaaaggtgctctgtcgctttcatagttccatttctgccatcaaa
agggatcagacagaaaatgggatttgggtatgggagtgaagagctgctgg
agagggagccagggattgcagtccccctgagtacagcaagcaggcttcca
cgtctgactcttgaattttgattttattcaaaaattttacatgttttggt
gcatcgaactaaaaatagtcagaacttggctttctcaataataatgtaaa
aacatgctgaagctttccgtggtccaacctcaacacacataggcagagac
ttccttgaggccggctgcacatctgcctgtcccccaggactaggttcaaa
cgctcctaggcccacatattggggagtttcaatccaaccttgaaggaagg
ttaaatcctctccagtctttggatgcaattaccattaaggttgaaaacga
gggtgatgtgcagtattgccagcctttccaggtttgtattaacaccttcc
tcagaggatggctggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24616252_24617375
seq2: B6Ng01-100H17.g_69_1185 (reverse)

seq1  GTCCAGCCATCCCTCTGAAGGCAGTGTTTATACAAACTTGAAAAAGCCTG  50
      |||||||||| ||||||| |   ||||| |||||||| ||  |||| |||
seq2  GTCCAGCCAT-CCTCTGAGGAAGGTGTTAATACAAACCTG-GAAAGGCTG  48

seq1  CCACTACTGCTCATCACCCTCGTTTTTCAACCTTAATGGTAATTGCATTC  100
       || |||||| ||||||||||| |||||||||||||||||||||||| ||
seq2  GCAATACTGCACATCACCCTCG-TTTTCAACCTTAATGGTAATTGCA-TC  96

seq1  CAAAGACTGGGAGA-GATTTAACCTTCCCTTCAGGGTTGGATTGAAAACT  149
      |||||||| ||||| ||||||||||| |||||| |||||||||||||   
seq2  CAAAGACT-GGAGAGGATTTAACCTT-CCTTCAAGGTTGGATTGAAACTC  144

seq1  CCCATTATTGTGGGCCTAGGAGCGTTTGGACCTAGTCCTGGGGGACACGG  199
      |||| || |||||||||||||||||||| |||||||||||||||||| ||
seq2  CCCAATA-TGTGGGCCTAGGAGCGTTTGAACCTAGTCCTGGGGGACA-GG  192

seq1  CAGATGTGCAGCCGGCCTCAGGGAAGTCTCTGCCTATGTGTGTTGAGGTT  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAGATGTGCAGCCGGCCTCAAGGAAGTCTCTGCCTATGTGTGTTGAGGTT  242

seq1  GGACCACGGAAAGCTTCAGCATGTTTTTACATTATTATTGAGAAAGCCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACGGAAAGCTTCAGCATGTTTTTACATTATTATTGAGAAAGCCAA  292

seq1  GTTCTGACTATTTTTAGTTCGATGCACCAAAACATGTAAAATTTTTGAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGACTATTTTTAGTTCGATGCACCAAAACATGTAAAATTTTTGAAT  342

seq1  AAAATCAAAATTCAAGAGTCAGACGTGGAAGCCTGCTTGCTGTACTCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAATTCAAGAGTCAGACGTGGAAGCCTGCTTGCTGTACTCAGG  392

seq1  GGGACTGCAATCCCTGGCTCCCTCTCCAGCAGCTCTTCACTCCCATACCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGCAATCCCTGGCTCCCTCTCCAGCAGCTCTTCACTCCCATACCC  442

seq1  AAATCCCATTTTCTGTCTGATCCCTTTTGATGGCAGAAATGGAACTATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCATTTTCTGTCTGATCCCTTTTGATGGCAGAAATGGAACTATGA  492

seq1  AAGCGACAGAGCACCTTTCAGTCTTTCTTGCCTGCTCTCCACTTCTACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGACAGAGCACCTTTCAGTCTTTCTTGCCTGCTCTCCACTTCTACAA  542

seq1  GGCATTAGATGCCCTTCCCAATCTTATATTGTTCTTCCGTAATCTGGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGATGCCCTTCCCAATCTTATATTGTTCTTCCGTAATCTGGATT  592

seq1  TATCCTTATTTTCAATTTCCAAAAGAAAAAATATTTTGGATAGGTCATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTATTTTCAATTTCCAAAAGAAAAAATATTTTGGATAGGTCATAA  642

seq1  AATTATGTGTGAGGATAAAGTCGCCCTTCATCTCTTCTTCGCTGCCTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTGTGAGGATAAAGTCGCCCTTCATCTCTTCTTCGCTGCCTTTC  692

seq1  CCTAGTCAGGCTCTAAAGGATAGAGATGAGCTCCTGGGGTCTTGAACATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCAGGCTCTAAAGGATAGAGATGAGCTCCTGGGGTCTTGAACATC  742

seq1  CTTGGCCCTCCAGGGATGCCTACTCACATCTTCTTGGCACACTGACTGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCCTCCAGGGATGCCTACTCACATCTTCTTGGCACACTGACTGCC  792

seq1  ATCAAGCCCTGACCTGGCACCATGCATCGATTTGCCTTGCTTCCAGGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCCCTGACCTGGCACCATGCATCGATTTGCCTTGCTTCCAGGCTG  842

seq1  ACCACTGGAATGGTGCCACAGGCTCTGGGCACAGCCACCCAGATGAAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGAATGGTGCCACAGGCTCTGGGCACAGCCACCCAGATGAAAGA  892

seq1  ATCTTGGGTCCTATCCCTAGAATCAAGAGCAAGCGACACAGATGGGACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGGTCCTATCCCTAGAATCAAGAGCAAGCGACACAGATGGGACCT  942

seq1  TTCCTTCCGTTGCAAATATTCAATCTCTGGCAGGCTTTTGTTCTCGCTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCGTTGCAAATATTCAATCTCTGGCAGGCTTTTGTTCTCGCTGT  992

seq1  CCAGAAAAGCCAGCTTTCAACAGCATCAGTTTTAAGATGCTTCATCACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAGCCAGCTTTCAACAGCATCAGTTTTAAGATGCTTCATCACAT  1042

seq1  TCTCCCTCAAGAGCTGCTCTAAGGCAGAGTTCTGAGCTTATTTCAAACGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCAAGAGCTGCTCTAAGGCAGAGTTCTGAGCTTATTTCAAACGA  1092

seq1  GCAGCTCGCCTGGCAATATGAATTC  1124
      |||||||||||||||||||||||||
seq2  GCAGCTCGCCTGGCAATATGAATTC  1117