BAC Information

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BAC

Clone NameB6Ng01-100I03
Chromosome9 (Build37)
Map Location 17,471,620 - 17,632,282
singlet/doubletdoublet
Overlap geneLOC244710, LOC100040508
Upstream geneEG434373, LOC100040074, LOC100040090
Downstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100I03.bB6Ng01-100I03.g
ACCDH909988DH909989
length1,1631,073
definitionDH909988|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I03, 5' end.DH909989|Mus musculus domesticus DNA, BAC clone: B6Ng01-100I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,631,105 - 17,632,282)(17,471,620 - 17,472,694)
sequence
gaattcacagcaagaacatcatttggtgattatgaaaataatctctcatt
tttcataaccaaatttgttcacgaattttccagatgactgaataatcaat
gtgataccaccacttaagttagcactctagttttgcaaactatagattct
tatgtcacttttaaactacaaatgcatttgtatgcacctatctcctgata
tttgaattaacaggaaaataataaaatgaatggttaagcacttgttatgt
attctggtgaccactggccaactctaaaggatactaaaccagtaacatag
cacaaatctaaatgactcatccatcagacctggaattctgaaccacaaag
ccaagttattttgtttagtttaaatgaagttgagactgagaaaaagataa
aaatataaatgtaatatttaatagcagaacggagtgcataacttctattt
cttgatatttttactttactactgtctgatggtctttgaaacagaggtaa
attgtttttgaattaaccattaagtaccttacataagagtgatttaggaa
atatctttcaaagccagaagatatatttagaagtactttaaagttactat
gattaattcaaaagttatcatatttagacattccctacacttaaaactcc
tttgtaaagtttttctaagaccaacagaggtaatagccactatccatgat
gaacttctttaatgtaggtaagaaatctgtctataaaggtagttgacata
tgtactactatagttccttaactcaagtagttatagtgctgagagactat
ttcccagttgtcaggagtgcagtttgtatcctggtggcatacagttaagc
agaggggacttggacacatctctgaggatgagactacacttagttggtgt
tctatttagttttttttttcctcttttattaaaaatagacttttctcaca
gaatacatactgattaggatttcccttcttctacttctaaaagctcttcc
caactcacttccatcaggttctttcaatgccatcatttcccttcccagaa
accctgaaattctttccatcttttctaccttccactcccggcttcccttt
aaaaaaaaaaggcaataagaaattctaaccgtgagtggaatgtgtttttt
ccttgattgattt
gaattcaacccttgagaaaatattagtctccctagaatatgtgcttattt
tatatcttcatatcttttgctctctgcatttcccaatatttattatttaa
attaatagatcaactttctggggttcaagaaaacctaacattagtgtgta
aagcacttgtagctaaaattaattaggagtttctgttgggagtcattcat
ctgcttctttgaagcagagtggaagtgtgtctgcaaggcatagtcagaac
aggtcaggggtgtggtcctggcaggaagatttcctggcctgctgacacat
ggaagtttaggaggagatacatttgagactcaaggcgaggggctgaatat
tctattgatgttggtagaaggaacaagaaatcctattcatgggaacagat
atcctatggaaatgtaagcaactgtttctgatagcttgtggtcttgcttc
caaaagcactgtggggtataaaaaggttatactcactaaactcaggcctc
tgcactactcactgatagtcctcctgagtctttcccgtctctatgtcttc
tttctgtctttttttaatcatcctcaccaccaccacccttttcagggact
tattgaatcatgccagtgggctctagcaggtttctatcccacatctgatc
tttcagttcccaaataaaagtcacaaaacatttatatttataataagtat
taacagcactagagctcggcagatatttaccttctatcctattatataca
tcccatttaataaccccaaggcatgagttggtgtgggttaacatgatggc
ctcagtctggcccagtgtgtgggccactgggtgaggtgggacacaggaag
tttgactgcatgcacccatgctgctactgggcaggcatggactgtgagag
gctgcagaaccccactccagggtgaggagcacagtctgaggtccccacgg
aactgccagaaggtgctctgggtccccaagcccgcacagaggctggggac
agcaggttctctcttggacacccacagaatgctggcggaacccaagagaa
aaagcagctccatggttttaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17631105_17632282
seq2: B6Ng01-100I03.b_43_1205 (reverse)

seq1  AAATCAAATCAAGAAAAAAAACACA-TCCACTCCACGTTTTAGAATATTC  49
      ||||| |||||||  |||||||||| |||||| ||||  ||||||| |  
seq2  AAATC-AATCAAG-GAAAAAACACATTCCACT-CACG-GTTAGAATTTCT  46

seq1  TATTGCTTTTTTTTTTTTTAAAGTGAAAGACCGTGGAGTTGGAAGGGTAG  99
      ||||||   |||||||||||||| |||   ||| |||| ||||| |||||
seq2  TATTGC--CTTTTTTTTTTAAAGGGAA--GCCG-GGAG-TGGAA-GGTAG  89

seq1  -AAAGATTGGAAGGATTTCAGAGTATCTGGGGAAGGGAAATGATGGCATG  148
       |||||| | ||| ||||||| || ||| |||||||||||||||||||| 
seq2  AAAAGATGGAAAGAATTTCAGGGTTTCT-GGGAAGGGAAATGATGGCAT-  137

seq1  TGAAAGAACCTGATGGAAGTGGAGTTGGGGAAGAGCTTTTAGAAGTAGAA  198
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TGAAAGAACCTGATGGAAGT-GAGTT-GGGAAGAGCTTTTAGAAGTAGAA  185

seq1  GGAGGGGAAATCCTAATCAGTATGTATTCTGTGAAGAAAAAGTCTATTTT  248
       || ||||||||||||||||||||||||||||||   |||||||||||||
seq2  -GAAGGGAAATCCTAATCAGTATGTATTCTGTGA--GAAAAGTCTATTTT  232

seq1  TAATAAAAGAGGAAAAAAAAAACTAAATAGAACACCAACTAAGTGTAGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAGAGGAAAAAAAAAACTAAATAGAACACCAACTAAGTGTAGTC  282

seq1  TCAT-CTCAGAGATGTGTCCAAGTCCCCTCTGCTTAACTGTATGCCACCA  347
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTCAGAGATGTGTCCAAGTCCCCTCTGCTTAACTGTATGCCACCA  332

seq1  GGATACAAACTGCACTCCTGACAACTGGGAAATAGTCTCTCAGCACTATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAAACTGCACTCCTGACAACTGGGAAATAGTCTCTCAGCACTATA  382

seq1  ACTACTTGAGTTAAGGAACTATAGTAGTACATATGTCAACTACCTTTATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTGAGTTAAGGAACTATAGTAGTACATATGTCAACTACCTTTATA  432

seq1  GACAGATTTCTTACCTACATTAAAGAAGTTCATCATGGATAGTGGCTATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATTTCTTACCTACATTAAAGAAGTTCATCATGGATAGTGGCTATT  482

seq1  ACCTCTGTTGGTCTTAGAAAAACTTTACAAAGGAGTTTTAAGTGTAGGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTTGGTCTTAGAAAAACTTTACAAAGGAGTTTTAAGTGTAGGGA  532

seq1  ATGTCTAAATATGATAACTTTTGAATTAATCATAGTAACTTTAAAGTACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAAATATGATAACTTTTGAATTAATCATAGTAACTTTAAAGTACT  582

seq1  TCTAAATATATCTTCTGGCTTTGAAAGATATTTCCTAAATCACTCTTATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATATATCTTCTGGCTTTGAAAGATATTTCCTAAATCACTCTTATG  632

seq1  TAAGGTACTTAATGGTTAATTCAAAAACAATTTACCTCTGTTTCAAAGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTACTTAATGGTTAATTCAAAAACAATTTACCTCTGTTTCAAAGAC  682

seq1  CATCAGACAGTAGTAAAGTAAAAATATCAAGAAATAGAAGTTATGCACTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACAGTAGTAAAGTAAAAATATCAAGAAATAGAAGTTATGCACTC  732

seq1  CGTTCTGCTATTAAATATTACATTTATATTTTTATCTTTTTCTCAGTCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTGCTATTAAATATTACATTTATATTTTTATCTTTTTCTCAGTCTC  782

seq1  AACTTCATTTAAACTAAACAAAATAACTTGGCTTTGTGGTTCAGAATTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATTTAAACTAAACAAAATAACTTGGCTTTGTGGTTCAGAATTCC  832

seq1  AGGTCTGATGGATGAGTCATTTAGATTTGTGCTATGTTACTGGTTTAGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGATGGATGAGTCATTTAGATTTGTGCTATGTTACTGGTTTAGTA  882

seq1  TCCTTTAGAGTTGGCCAGTGGTCACCAGAATACATAACAAGTGCTTAACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGAGTTGGCCAGTGGTCACCAGAATACATAACAAGTGCTTAACC  932

seq1  ATTCATTTTATTATTTTCCTGTTAATTCAAATATCAGGAGATAGGTGCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTATTATTTTCCTGTTAATTCAAATATCAGGAGATAGGTGCAT  982

seq1  ACAAATGCATTTGTAGTTTAAAAGTGACATAAGAATCTATAGTTTGCAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCATTTGTAGTTTAAAAGTGACATAAGAATCTATAGTTTGCAAA  1032

seq1  ACTAGAGTGCTAACTTAAGTGGTGGTATCACATTGATTATTCAGTCATCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGTGCTAACTTAAGTGGTGGTATCACATTGATTATTCAGTCATCT  1082

seq1  GGAAAATTCGTGAACAAATTTGGTTATGAAAAATGAGAGATTATTTTCAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTCGTGAACAAATTTGGTTATGAAAAATGAGAGATTATTTTCAT  1132

seq1  AATCACCAAATGATGTTCTTGCTGTGAATTC  1178
      |||||||||||||||||||||||||||||||
seq2  AATCACCAAATGATGTTCTTGCTGTGAATTC  1163

seq1: chr9_17471620_17472694
seq2: B6Ng01-100I03.g_69_1141

seq1  GAATTCAACCCTTGAGAAAATATTAGTCTCCCTAGAATATGTGCTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCTTGAGAAAATATTAGTCTCCCTAGAATATGTGCTTATTT  50

seq1  TATATCTTCATATCTTTTGCTCTCTGCATTTCCCAATATTTATTATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTCATATCTTTTGCTCTCTGCATTTCCCAATATTTATTATTTAA  100

seq1  ATTAATAGATCAACTTTCTGGGGTTCAAGAAAACCTAACATTAGTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGATCAACTTTCTGGGGTTCAAGAAAACCTAACATTAGTGTGTA  150

seq1  AAGCACTTGTAGCTAAAATTAATTAGGAGTTTCTGTTGGGAGTCATTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTGTAGCTAAAATTAATTAGGAGTTTCTGTTGGGAGTCATTCAT  200

seq1  CTGCTTCTTTGAAGCAGAGTGGAAGTGTGTCTGCAAGGCATAGTCAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTTTGAAGCAGAGTGGAAGTGTGTCTGCAAGGCATAGTCAGAAC  250

seq1  AGGTCAGGGGTGTGGTCCTGGCAGGAAGATTTCCTGGCCTGCTGACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGGGTGTGGTCCTGGCAGGAAGATTTCCTGGCCTGCTGACACAT  300

seq1  GGAAGTTTAGGAGGAGATACATTTGAGACTCAAGGCGAGGGGCTGAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTAGGAGGAGATACATTTGAGACTCAAGGCGAGGGGCTGAATAT  350

seq1  TCTATTGATGTTGGTAGAAGGAACAAGAAATCCTATTCATGGGAACAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGATGTTGGTAGAAGGAACAAGAAATCCTATTCATGGGAACAGAT  400

seq1  ATCCTATGGAAATGTAAGCAACTGTTTCTGATAGCTTGTGGTCTTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGGAAATGTAAGCAACTGTTTCTGATAGCTTGTGGTCTTGCTTC  450

seq1  CAAAAGCACTGTGGGGTATAAAAAGGTTATACTCACTAAACTCAGGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCACTGTGGGGTATAAAAAGGTTATACTCACTAAACTCAGGCCTC  500

seq1  TGCACTACTCACTGATAGTCCTCCTGAGTCTTTCCCGTCTCTATGTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTACTCACTGATAGTCCTCCTGAGTCTTTCCCGTCTCTATGTCTTC  550

seq1  TTTCTGTCTTTTTTTAATCATCCTCACCACCACCACCCTTTTCAGGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTTTTTTTAATCATCCTCACCACCACCACCCTTTTCAGGGACT  600

seq1  TATTGAATCATGCCAGTGGGCTCTAGCAGGTTTCTATCCCACATCTGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATCATGCCAGTGGGCTCTAGCAGGTTTCTATCCCACATCTGATC  650

seq1  TTTCAGTTCCCAAATAAAAGTCACAAAACATTTATATTTATAATAAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCCCAAATAAAAGTCACAAAACATTTATATTTATAATAAGTAT  700

seq1  TAACAGCACTAGAGCTCGGCAGATATTTACCTTCTATCCTATTATATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCACTAGAGCTCGGCAGATATTTACCTTCTATCCTATTATATACA  750

seq1  TCCCATTTAATAACCCCAAGGCATGAGTTGGTGTGGGTTAACATGATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTAATAACCCCAAGGCATGAGTTGGTGTGGGTTAACATGATGGC  800

seq1  CTCAGTCTGGCCCAGTGTGTGGGCCACTGGGTGAGGTGGGACACAGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTGGCCCAGTGTGTGGGCCACTGGGTGAGGTGGGACACAGGAAG  850

seq1  TTTGACTGCATGCACCCCATGCTGCTACTGGGCAGGCATTGGACTGTGAG  900
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  TTTGACTGCATGCA-CCCATGCTGCTACTGGGCAGGCA-TGGACTGTGAG  898

seq1  AGGCTGCAGAACCCCACTCCAGGGGTGAGGAAGCACAGTCTGAGGTCCCC  950
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  AGGCTGCAGAACCCCACTCCA-GGGTGAGG-AGCACAGTCTGAGGTCCCC  946

seq1  ACGGAACTGCCAGAGGTGGCTCTGGGTCCCCAAGCCCGCACAGAGGCTGG  1000
      |||||||||||||| |  ||||||||||||||||||||||||||||||||
seq2  ACGGAACTGCCAGAAGGTGCTCTGGGTCCCCAAGCCCGCACAGAGGCTGG  996

seq1  GGACAGCAGGTTCTCTCTTGGACA-CCACAG-ATGCTGGCGGAGCCCAAG  1048
      |||||||||||||||||||||||| |||||| ||||||||||| ||||| 
seq2  GGACAGCAGGTTCTCTCTTGGACACCCACAGAATGCTGGCGGAACCCAA-  1045

seq1  GAGAAGAGGCAG-TCCATGGTTTTAAGG  1075
      ||||| | |||| |||||||||||||||
seq2  GAGAAAAAGCAGCTCCATGGTTTTAAGG  1073