BAC Information

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BAC

Clone NameB6Ng01-100M18
Chromosome9 (Build37)
Map Location 18,777,787 - 18,778,698
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726
Downstream geneOlfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100M18.bB6Ng01-100M18.g
ACCDH910183DH910184
length9131,189
definitionDH910183|Mus musculus domesticus DNA, BAC clone: B6Ng01-100M18, 5' end.DH910184|Mus musculus domesticus DNA, BAC clone: B6Ng01-100M18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgataaagttaatgattgtttttttacattctgtgctctcaa
attcatacacctatttttcagtagcaaatattgctataggcctagagaat
gtaagaatgaaatcttttattttgttagtaattttgaaaaataatgtgtg
atgtggacaacttttattagttcaatacctaatatttacatagtaggttt
gatcaggaaaagaatgtgtgtggggttttgggccttgagattataaatgg
cttaggtagataaaagtcagatagacagaagggacttgggaggtttacat
gatgtgtatccttatccagatctgaattgtgagagcatttcttctcaggt
aaagacaatggatgtggaatggtagtggaattttgtgtttagaggtagaa
aagttatgtcttgattaatcatgaaaaatgctggttagattagttcatac
tgggacccttgaggttggatcgaggcttcacgcagaaggtaaattaaggg
aaaatccacattggcacactgggatatattctgcgaaaagatatgcagga
ctttgttaggtggatggtccattgaccttttgtatgtactctatcttatc
tctagtcttcaagacagtattcacttttgtgaaactgatactgaattgat
ttctttctatgccactttctttgtgtgatatctcctttcctctcacaaga
aggggatttaaggtaagggaattgcttctcagcatgattgatgcagggac
tccatctccagaactgggtttttgagatattgtctctctgtggtctacat
gactcttttctttcttttttagctttagtagaatttcagacttggggaga
gatgagatttttttttccagtgaaacccttctgcctattgtgatatcagc
tcctaggacacaa
gaattcacatcagggagaacctgtcttgaggaagcaaaattaacatcaga
atacaaacagcatcagggcaagacatatttgtcccaattaatatcttctt
agttaattagaaaaatatatgcttgttacttacatgatggatgagaaaaa
tgtctaccaagaaagaaaaatcttttccaggaacatctaattgacccata
aatataattacatgttttatggcaagatatgagtcaggaaaacaccaaga
aaagtaggagacaccataagcaatataccaaaaactttatcttattagtt
tgtgttttagttagggttttcatttctgaaaagagacaccaacactgtga
ccatggaaactcttctaaaggactacatttaattggggctggcttacaca
ttcagagattcagtacattattatcacagtgggaacttggaaaagtttat
aaaacgtggggctgggccaaaaattctacatcttgaactaaaggtaaaca
ggagaagactgtttcacccatggtgggggaagttctaaaaaccaatcccc
acagtaatgcactacctaaaaaagaccacacctactccaacaaggccaca
ctctgtaaagtgtcactccctgggacaaacatattcaaaccaccacagtt
ggtgtatatcattatctttgtttctatttgtttgatttctgtctgagttt
gactatttcctgctgtcaattcctcttgagtgtgtttgcttatttttgtt
ttagtgctctcaggaatgcagttaagctgctagtataggatctctccaat
ttctttattagggcacttagagctgagaatgttctcttagaacctctttc
actgtgactcgtaagtattggcatgctgtgccagcattttcattgaatct
caggaagtctttaatttctttctttatttctttttttgacaaagttatca
atgagtagagagttttttagtgtcaagggatatggggtgttttctggttt
tgtttgttagttttttggtctttttttttttttgccatggaagtctagct
ttagatcggggggatcggacagaaacatgcgataatttccaattctggta
ttgggtgaaggtgggacgaattgagagaaatatgtctaagattagggaaa
atgcggagatcctataatttggctacccttatggattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_18777787_18778698
seq2: B6Ng01-100M18.b_46_958

seq1  GAATTCTTTGATAAAGTTAATGATTGTTTTTTTACATTCTGTGCTCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATAAAGTTAATGATTGTTTTTTTACATTCTGTGCTCTCAA  50

seq1  ATTCATACACCTATTTTTCAGTAGCAAATATTGCTATAGGCCTAGAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACACCTATTTTTCAGTAGCAAATATTGCTATAGGCCTAGAGAAT  100

seq1  GTAAGAATGAAATCTTTTATTTTGTTAGTAATTTTGAAAAATAATGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATGAAATCTTTTATTTTGTTAGTAATTTTGAAAAATAATGTGTG  150

seq1  ATGTGGACAACTTTTATTAGTTCAATACCTAATATTTACATAGTAGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACAACTTTTATTAGTTCAATACCTAATATTTACATAGTAGGTTT  200

seq1  GATCAGGAAAAGAATGTGTGTGGGGTTTTGGGCCTTGAGATTATAAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAAAAGAATGTGTGTGGGGTTTTGGGCCTTGAGATTATAAATGG  250

seq1  CTTAGGTAGATAAAAGTCAGATAGACAGAAGGGACTTGGGAGGTTTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTAGATAAAAGTCAGATAGACAGAAGGGACTTGGGAGGTTTACAT  300

seq1  GATGTGTATCCTTATCCAGATCTGAATTGTGAGAGCATTTCTTCTCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTATCCTTATCCAGATCTGAATTGTGAGAGCATTTCTTCTCAGGT  350

seq1  AAAGACAATGGATGTGGAATGGTAGTGGAATTTTGTGTTTAGAGGTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAATGGATGTGGAATGGTAGTGGAATTTTGTGTTTAGAGGTAGAA  400

seq1  AAGTTATGTCTTGATTAATCATGAAAAATGCTGGTTAGATTAGTTCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGTCTTGATTAATCATGAAAAATGCTGGTTAGATTAGTTCATAC  450

seq1  TGGGACCCTTGAGGTTGGATCGAGGCTTCACGCAGAAGGTAAATTAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCCTTGAGGTTGGATCGAGGCTTCACGCAGAAGGTAAATTAAGGG  500

seq1  AAAATCCACATTGGCACACTGGGATATATTCTGCGAAAAGATATGCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCACATTGGCACACTGGGATATATTCTGCGAAAAGATATGCAGGA  550

seq1  CTTTGTTAGGTGGATGGTCCATTGACCTTTTGTATGTACTCTATCTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTAGGTGGATGGTCCATTGACCTTTTGTATGTACTCTATCTTATC  600

seq1  TCTAGTCTTCAAGACAGTATTCACTTTTGTGAAACTGATACTGAATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTTCAAGACAGTATTCACTTTTGTGAAACTGATACTGAATTGAT  650

seq1  TTCTTTCTATGCCACTTTCTTTGTGTGATATCTCC-TTCCTCTCACAAGA  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTTTCTATGCCACTTTCTTTGTGTGATATCTCCTTTCCTCTCACAAGA  700

seq1  AGGGGATTTAAGGTAAGGGAATTGCTTCTCAGCATGATTGATGCAGGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTTAAGGTAAGGGAATTGCTTCTCAGCATGATTGATGCAGGGAC  750

seq1  TCCATCTCCAGAACTGGGTTTTTGAGATATTGTCTCTCTGTGGTCTTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCATCTCCAGAACTGGGTTTTTGAGATATTGTCTCTCTGTGGTC-TACA  799

seq1  TGACTCTTTTCTTTCTTTTTTAGCTTTAGTAGTAATTTCAGACTTGGGGA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGACTCTTTTCTTTCTTTTTTAGCTTTAGTAG-AATTTCAGACTTGGGGA  848

seq1  GAGATGAGA-TTTTTTTTCCAGTG-AATCCTTCTGCTTATTGTGATATCA  897
      ||||||||| |||||||||||||| || |||||||| |||||||||||||
seq2  GAGATGAGATTTTTTTTTCCAGTGAAACCCTTCTGCCTATTGTGATATCA  898

seq1  GCTCCTAGGACACAA  912
      |||||||||||||||
seq2  GCTCCTAGGACACAA  913