BAC Information

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BAC

Clone NameB6Ng01-101A21
Chromosome9 (Build37)
Map Location 44,347,746 - 44,492,429
singlet/doubletdoublet
Overlap geneDdx6, LOC667406, LOC100042660, Treh
Upstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1
Downstream genePhldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101A21.bB6Ng01-101A21.g
ACCDH910362DH910363
length1,122765
definitionDH910362|Mus musculus domesticus DNA, BAC clone: B6Ng01-101A21, 5' end.DH910363|Mus musculus domesticus DNA, BAC clone: B6Ng01-101A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,491,293 - 44,492,429)(44,347,746 - 44,348,511)
sequence
gaattcatggctccttgaactaacatccctgccctgctccctgggacttg
ctgctccgtctcccgggtccaccattctgatggctcttgctcggaggagg
ctaatgagagcatcagggaatggagagagagctgatgtatgcaccgaggt
acccttcaaaaaggacagcagtgtgaacgtgtgtggtcctatcatcctct
ctctcactctgtgtctgtctccgtctgtgtctgtctgtctctgtctcttg
tctctctctatctctgtctctcttcatgtctccataggagtgaaggcttg
agctggctgaggagacctacctccagtcccatggccaggctgatgcagga
gcccacactggcctgcctcctgacacaggatgctcacctagtctggagta
gaagttactcatcagttcctctgcttggcacaggaacgcgttcagatcag
cgggtaccattttgctggttcggatgctgctgagcaaatcagggtctggg
cctccaacaagccagcgtgaagagaagtcccagccagactcagccccagc
cttgagctcagcccacagagtctctcggtcccctgtgaggacaaaacagc
aaccccaggccgcaactgacttcaggacaaagcagccacagatcaaagcc
agacagtcacagaggctaagcaccgccaccccgtccgtctgtctgtcagt
cctccctcctcctgttcctgcttaccttctggcacagagtttgccaattc
tgcgtctttcctgtaggactctggcctagccaagagaaggacaacagccc
aacattgggaggtgctaagcccctctgccagccagaaagctgggtcatct
tgactcaaaaggtaccctgacacccgacacgcacaggctctcaggtctaa
gtcaccccttcagtttgaggttgcagagatgctcatgtcagagtgagctg
atggcagccagtttctcacctggtcccccataaggacatagtagcgattt
agacatagctttgtcctctgagactacgaaaaagtctgttcacagtccag
agtccagttagaggctagagttccaataattctccttggatgagcagcac
atcctcagcccgggtcagccat
gaattcttcaggcagcaatgcaatcccacaatcctccagggtcttcagct
gccacagagcaggtaccactgagactagagccagagaggcatggaagcta
gctccacaggagggcaactcacagggcctagttagttcaccataaaacac
ttaatgatttagacttcccagacttgggatggggaagagaacaagacaat
ggaccgaacaccatgacccagcccagtgcctagaaaatgaacttgctgtc
ctggagacaggctctggtcaactgcaggggggaaactcaaataattgagt
tcttgtctgaggaggctgagttgggaagatatcaaagagaaagcctcaga
aatgaccccagcagctaatgagggcccctctgatccatgattactgaact
gtgagtgagtggtgggtactgtgtatttgagagaagaggacactggggga
gcccagcctcactccgggcttttccccagtcacactggccctgggaggca
gctggaggtctcagatggcagctgcctacagcactgctgggcacagggca
aagggcacaggtgttcttcttcttaccaatttactctcagaactggcaaa
gggcactggaatgtgtcactttagtcatagcttctgagggcagggtacac
accaggcctctctgtgagctacacatttgtgtttaagtaaaagcaactag
aacccagggagggaaagaatttttttcaatggcttttttttttttttttt
tttattttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_44491293_44492429
seq2: B6Ng01-101A21.b_49_1170 (reverse)

seq1  ATGGCTTTGTACCCGGGCTGAGGTGTTGCTTGCTTCAACCCAGGGAGAA-  49
      ||||||    |||||||||||||   ||| ||||   | ||| |||||| 
seq2  ATGGCT---GACCCGGGCTGAGGATGTGC-TGCT--CATCCAAGGAGAAT  44

seq1  TATTGGGACTCTAGCCTCTGAACTGGACTTCTGGACTGTGAACAGGACTG  99
      |||||| |||||||||||| |||||||| ||||||||||||||| |||| 
seq2  TATTGGAACTCTAGCCTCT-AACTGGAC-TCTGGACTGTGAACA-GACTT  91

seq1  TCTCTGTAGTCTCAGGAGGACAAAGCTATGTCTTAAATCGCTACTATGTC  149
      | || ||||||||| ||||||||||||||||| |||||||||||||||| 
seq2  TTTC-GTAGTCTCA-GAGGACAAAGCTATGTC-TAAATCGCTACTATGT-  137

seq1  CCTTATGGGGGACCCAGGTGAGAAACTGGCCTGCCATCAGCTCACTCTGA  199
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  CCTTATGGGGGA-CCAGGTGAGAAACTGG-CTGCCATCAGCTCACTCTGA  185

seq1  CATGAGCATCTCTGCAACCTCAAACTGGAGGGGTGACTTAGACCCTGAGA  249
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  CATGAGCATCTCTGCAACCTCAAACTGAAGGGGTGACTTAGA-CCTGAGA  234

seq1  GCCTGTGCGTGTCGGGTGTCAGGGTACCTTTTGAGTCAAGATGACCCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCGTGTCGGGTGTCAGGGTACCTTTTGAGTCAAGATGACCCAGC  284

seq1  TTTCTGGCTGGCAGAGGGGCTTAGCACCTCCCAATGTTGGGCTGTTGTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCTGGCAGAGGGGCTTAGCACCTCCCAATGTTGGGCTGTTGTCC  334

seq1  TTCTCTTGGCTAGGCCAGAGTCCTACAGGAAAGACGCAGAATTGGCAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGGCTAGGCCAGAGTCCTACAGGAAAGACGCAGAATTGGCAAAC  384

seq1  TCTGTGCCAGAAGGTAAGCAGGAACAGGAGGAGGGAGGACTGACAGACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCAGAAGGTAAGCAGGAACAGGAGGAGGGAGGACTGACAGACAG  434

seq1  ACGGACGGGGTGGCGGTGCTTAGCCTCTGTGACTGTCTGGCTTTGATCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACGGGGTGGCGGTGCTTAGCCTCTGTGACTGTCTGGCTTTGATCTG  484

seq1  TGGCTGCTTTGTCCTGAAGTCAGTTGCGGCCTGGGGTTGCTGTTTTGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTTTGTCCTGAAGTCAGTTGCGGCCTGGGGTTGCTGTTTTGTCC  534

seq1  TCACAGGGGACCGAGAGACTCTGTGGGCTGAGCTCAAGGCTGGGGCTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGGACCGAGAGACTCTGTGGGCTGAGCTCAAGGCTGGGGCTGAG  584

seq1  TCTGGCTGGGACTTCTCTTCACGCTGGCTTGTTGGAGGCCCAGACCCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGGGACTTCTCTTCACGCTGGCTTGTTGGAGGCCCAGACCCTGA  634

seq1  TTTGCTCAGCAGCATCCGAACCAGCAAAATGGTACCCGCTGATCTGAACG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCAGCAGCATCCGAACCAGCAAAATGGTACCCGCTGATCTGAACG  684

seq1  CGTTCCTGTGCCAAGCAGAGGAACTGATGAGTAACTTCTACTCCAGACTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCTGTGCCAAGCAGAGGAACTGATGAGTAACTTCTACTCCAGACTA  734

seq1  GGTGAGCATCCTGTGTCAGGAGGCAGGCCAGTGTGGGCTCCTGCATCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCATCCTGTGTCAGGAGGCAGGCCAGTGTGGGCTCCTGCATCAGC  784

seq1  CTGGCCATGGGACTGGAGGTAGGTCTCCTCAGCCAGCTCAAGCCTTCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATGGGACTGGAGGTAGGTCTCCTCAGCCAGCTCAAGCCTTCACT  834

seq1  CCTATGGAGACATGAAGAGAGACAGAGATAGAGAGAGACAAGAGACAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGAGACATGAAGAGAGACAGAGATAGAGAGAGACAAGAGACAGAG  884

seq1  ACAGACAGACACAGACGGAGACAGACACAGAGTGAGAGAGAGGATGATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACACAGACGGAGACAGACACAGAGTGAGAGAGAGGATGATAG  934

seq1  GACCACACACGTTCACACTGCTGTCCTTTTTGAAGGGTACCTCGGTGCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACACACGTTCACACTGCTGTCCTTTTTGAAGGGTACCTCGGTGCAT  984

seq1  ACATCAGCTCTCTCTCCATTCCCTGATGCTCTCATTAGCCTCCTCCGAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCTCTCTCTCCATTCCCTGATGCTCTCATTAGCCTCCTCCGAGC  1034

seq1  AAGAGCCATCAGAATGGTGGACCCGGGAGACGGAGCAGCAAGTCCCAGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCATCAGAATGGTGGACCCGGGAGACGGAGCAGCAAGTCCCAGGG  1084

seq1  AGCAGGGCAGGGATGTTAGTTCAAGGAGCCATGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCAGGGATGTTAGTTCAAGGAGCCATGAATTC  1122

seq1: chr9_44347746_44348511
seq2: B6Ng01-101A21.g_70_834

seq1  GAATTCTTCAGGCAGCAATGCAATCCCACAATCCTCCAGGGTCTTCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGCAGCAATGCAATCCCACAATCCTCCAGGGTCTTCAGCT  50

seq1  GCCACAGAGCAGGTACCACTGAGACTAGAGCCAGAGAGGCATGGAAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGCAGGTACCACTGAGACTAGAGCCAGAGAGGCATGGAAGCTA  100

seq1  GCTCCACAGGAGGGCAACTCACAGGGCCTAGTTAGTTCACCATAAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACAGGAGGGCAACTCACAGGGCCTAGTTAGTTCACCATAAAACAC  150

seq1  TTAATGATTTAGACTTCCCAGACTTGGGATGGGGAAGAGAACAAGACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATTTAGACTTCCCAGACTTGGGATGGGGAAGAGAACAAGACAAT  200

seq1  GGACCGAACACCATGACCCAGCCCAGTGCCTAGAAAATGAACTTGCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGAACACCATGACCCAGCCCAGTGCCTAGAAAATGAACTTGCTGTC  250

seq1  CTGGAGACAGGCTCTGGTCAACTGCAGGGGGGAAACTCAAATAATTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACAGGCTCTGGTCAACTGCAGGGGGGAAACTCAAATAATTGAGT  300

seq1  TCTTGTCTGAGGAGGCTGAGTTGGGAAGATATCAAAGAGAAAGCCTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTGAGGAGGCTGAGTTGGGAAGATATCAAAGAGAAAGCCTCAGA  350

seq1  AATGACCCCAGCAGCTAATGAGGGCCCCTCTGATCCATGATTACTGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCCCAGCAGCTAATGAGGGCCCCTCTGATCCATGATTACTGAACT  400

seq1  GTGAGTGAGTGGTGGGTACTGTGTATTTGAGAGAAGAGGACACTGGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAGTGGTGGGTACTGTGTATTTGAGAGAAGAGGACACTGGGGGA  450

seq1  GCCCAGCCTCACTCCGGGCTTTTCCCCAGTCACACTGGCCCTGGGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCTCACTCCGGGCTTTTCCCCAGTCACACTGGCCCTGGGAGGCA  500

seq1  GCTGGAGGTCTCAGATGGCAGCTGCCTACAGCACTGCTGGGCACAGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGTCTCAGATGGCAGCTGCCTACAGCACTGCTGGGCACAGGGCA  550

seq1  AAGGGCACAGGTGTTCTTCTTCTTACCAATTTACTCTCAGAACTGGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACAGGTGTTCTTCTTCTTACCAATTTACTCTCAGAACTGGCAAA  600

seq1  GGGCACTGGAATGTGTCACTTTAGTCATAGCTTCTGAGGGCAGGGTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTGGAATGTGTCACTTTAGTCATAGCTTCTGAGGGCAGGGTACAC  650

seq1  ACCAGGCCTCTCTGTGAGCTACACATTTGTGTTTAAGTAAAAGCAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCCTCTCTGTGAGCTACACATTTGTGTTTAAGTAAAAGCAACTAG  700

seq1  AACCCAGGGAGGGAAAGAATTTTTTTCAAATGGCTTTTTTTTTTTTTTTT  750
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACCCAGGGAGGGAAAGAATTTTTTTC-AATGGCTTTTTTTTTTTTTTTT  749

seq1  TTTTTTTTTTTTTTTT  766
      |||| |||||||||||
seq2  TTTTATTTTTTTTTTT  765