BAC Information

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BAC

Clone NameB6Ng01-101O15
Chromosome9 (Build37)
Map Location 32,208,605 - 32,342,430
singlet/doubletdoublet
Overlap geneFli1
Upstream geneNfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1
Downstream geneLOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101O15.bB6Ng01-101O15.g
ACCDH910958DH910959
length1,216969
definitionDH910958|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O15, 5' end.DH910959|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,341,199 - 32,342,430)(32,208,605 - 32,209,577)
sequence
gaattccttaaatattgtgataaaagattgagtcttataaaatatataat
cagaaataatcaatgtttaaatttatggtagtctacatagccgtacaaat
cccttagtgactgtcctaccactgtcttcttgctgcctagtcaataggaa
tgacagtggcttattagaaactttactagaaacttctggtgagccgtaag
gacaagacagtagagatgagtttgggaaaacagaaaggtccacccgacag
tgcttactaagtaggcactaagcaagggagggaaaattccatctcttctg
ctgttataaaaatgtggttacacaagagcgaggcgcatgcctgcattccc
agcacttaaaatatagagacaggagaatcccaagcccaaggacagtctgg
gacacttagtgatttcaaagtcaggctgcgccacatgccaaaacccggtt
tccaagagccaagggctgtcaattcagtttagtggtcaagcatgcgcctc
gtctgcacaaggctggatctgatccccagaacgatgagaaatgttttaga
atgttgattgttccgtttgctccttcacatgtgactctttgcccagtgtt
ctgagcaagctcaccgtgaggtgtgtctgtgattgggagggtctctcctc
ggtgacaacttcagctctttttaagaatgagtcagcaggtggtaagaaac
catgcagaagggaaggttgtttccctgaaactcaaacccaatttctatgg
aaattcagagaagtgtgacattctctcatgtgtaggttgggccaggtgtc
tccattactagcactcacatttcatctgatcaaaccaagacacacatttc
ttttgtgccttcgttcctgttggatcagagacagaaggataagctcactt
tcagtagttcagaccaactttacggcagcttcaaaatttcttcacacctg
aagtctataagcatttcctatctcagaaaacacaccctggcaatttattt
tatgttcaggatcttagagtcaaaaggttcaaactctcaggaagacacca
gactctagtcccgtgaatgaatttccaaagacaggcccagttattcagcc
agagttagcatcaagtcatgaaagacctatgtccatcagggcacactgca
gagcccgaatatcaggtgccagagagcttaacccggtgttctagacattg
tgtggacttcatatct
gaattcaaaaataatttaatctctacagccagatgcacacagctggactc
ttggagaggagccctacaaaaggggatttgtacattcattgggctaggaa
ccagcatgtgcctccggccagcccacctttgaatgttctgggtgttctgg
acacaagcacacttcaggcagggagaaccccagccatagagatggctacc
aagtgtttccttgccttaggttctgctttaagcatgaaagatatcttctc
tttttaacagccacagcaaccttgggaggccagtaccattaccatgccta
ttttttgtgtgaggcagctgaaataagagtattgcccagcaacagtagta
acaggctgggaatcagacacagcctatctacctggaaagtccgtgagttt
aattctcctctctgaatcctgagatagattccccctctgagacaacacac
agggccatcagacattgacctagaatccacagagggtcagtgccctctgt
ctggtcatgcactttgggaaacgtgagtcatagcacatgtggaagcccct
gagcaggcttagcaagtacttcttacattatgggattttggaggggagga
agatgtaggtaatctgcttggtagaactccagaattactgtaggagtcct
gtagacttatctagtttgtccgtgcaaccagttgcatatatatgtacatg
tgtgtatatatactcatgtgttaatatacatacatggatgtttaatatat
ttaaacacgcaaatatttattttaatattttaaatgtaatattttcaata
aatataaatataaatataaatataataatataggtaaaatatctatttat
acatatgcatgaatacattcacacaccaattgcatgtgctaggcctattc
ctattgctatagacactttaattaaaattcgtgtaacattttataccgtc
tctaaggaaaggtgtcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32341199_32342430
seq2: B6Ng01-101O15.b_47_1262 (reverse)

seq1  AGATATGTGAAAGCCACAC-ATGTCTAGAAACACCGGGTTAAAGCTCTCT  49
      |||||  ||||  |||||| |||||||| ||||||||||| |||||||| 
seq2  AGATA--TGAAGTCCACACAATGTCTAG-AACACCGGGTT-AAGCTCTC-  45

seq1  TGCCACCTGTAATTCGGGCTTCTTGCATGTGTGCACTGAAATGTGACATA  99
      || ||||||  |||||||||   |||| |||||| |||  ||| ||||||
seq2  TGGCACCTGATATTCGGGCT--CTGCA-GTGTGCCCTG--ATG-GACATA  89

seq1  AGTCTTTCATGACCTTGGATGCTAAGCTCTGGCTGAATAACTGGGCCTGC  149
       ||||||||||||  | |||||||| ||||||||||||||||||||||| 
seq2  GGTCTTTCATGAC--TTGATGCTAA-CTCTGGCTGAATAACTGGGCCTG-  135

seq1  TTTTGGGAAAATCATTCCACGGGACTAGAGTCT-GTGTCTTCCTGGAGAG  198
      | || ||||| ||||| |||||||||||||||| |||||||||| |||||
seq2  TCTTTGGAAATTCATT-CACGGGACTAGAGTCTGGTGTCTTCCT-GAGAG  183

seq1  TTTGAAACCTTTTGGACTCTGAGATTCTGAACATAAAATAAA-TGGCAGG  247
      |||| |||||||| |||||| |||| |||||||||||||||| || ||||
seq2  TTTG-AACCTTTT-GACTCTAAGATCCTGAACATAAAATAAATTGCCAGG  231

seq1  GTGTTGTTTTCTAGAGATAGGAAATGCCTTATAGACTTCAGGTGTG-AGA  296
      ||| |||||||| ||||||||||||| ||||||||||||||||||| |||
seq2  GTG-TGTTTTCT-GAGATAGGAAATG-CTTATAGACTTCAGGTGTGAAGA  278

seq1  AATTTTGAAGCTGCCGTAAAGTTGGTCTGAACTACTGAAAGTGAGCTATA  346
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AATTTTGAAGCTGCCGTAAAGTTGGTCTGAACTACTGAAAGTGAGCTTAT  328

seq1  CCTTCTGTCTCTGATCCAACAGGAACG-AGGCACAAAAG-AATGTGTGTC  394
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  CCTTCTGTCTCTGATCCAACAGGAACGAAGGCACAAAAGAAATGTGTGTC  378

seq1  TTGGTTTGATCAGATGAAATGTGAGTGCTAGTAATGGAGACACCTGGCCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGATCAGATGAAATGTGAGTGCTAGTAATGGAGACACCTGGCCC  428

seq1  AACCTACACATGAGAGAATGTCACACTTCTCTGAATTTCCATAGAAATTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACACATGAGAGAATGTCACACTTCTCTGAATTTCCATAGAAATTG  478

seq1  GGTTTGAGTTTCAGGGAAACAACCTTCCCTTCTGCATGGTTTCTTACCAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGTTTCAGGGAAACAACCTTCCCTTCTGCATGGTTTCTTACCAC  528

seq1  CTGCTGACTCATTCTTAAAAAGAGCTGAAGTTGTCACCGAGGAGAGACCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACTCATTCTTAAAAAGAGCTGAAGTTGTCACCGAGGAGAGACCC  578

seq1  TCCCAATCACAGACACACCTCACGGTGAGCTTGCTCAGAACACTGGGCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATCACAGACACACCTCACGGTGAGCTTGCTCAGAACACTGGGCAA  628

seq1  AGAGTCACATGTGAAGGAGCAAACGGAACAATCAACATTCTAAAACATTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACATGTGAAGGAGCAAACGGAACAATCAACATTCTAAAACATTT  678

seq1  CTCATCGTTCTGGGGATCAGATCCAGCCTTGTGCAGACGAGGCGCATGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCGTTCTGGGGATCAGATCCAGCCTTGTGCAGACGAGGCGCATGCT  728

seq1  TGACCACTAAACTGAATTGACAGCCCTTGGCTCTTGGAAACCGGGTTTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACTAAACTGAATTGACAGCCCTTGGCTCTTGGAAACCGGGTTTTG  778

seq1  GCATGTGGCGCAGCCTGACTTTGAAATCACTAAGTGTCCCAGACTGTCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGCGCAGCCTGACTTTGAAATCACTAAGTGTCCCAGACTGTCCT  828

seq1  TGGGCTTGGGATTCTCCTGTCTCTATATTTTAAGTGCTGGGAATGCAGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGGGATTCTCCTGTCTCTATATTTTAAGTGCTGGGAATGCAGGC  878

seq1  ATGCGCCTCGCTCTTGTGTAACCACATTTTTATAACAGCAGAAGAGATGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCTCGCTCTTGTGTAACCACATTTTTATAACAGCAGAAGAGATGG  928

seq1  AATTTTCCCTCCCTTGCTTAGTGCCTACTTAGTAAGCACTGTCGGGTGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCCTCCCTTGCTTAGTGCCTACTTAGTAAGCACTGTCGGGTGGA  978

seq1  CCTTTCTGTTTTCCCAAACTCATCTCTACTGTCTTGTCCTTACGGCTCAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTTTTCCCAAACTCATCTCTACTGTCTTGTCCTTACGGCTCAC  1028

seq1  CAGAAGTTTCTAGTAAAGTTTCTAATAAGCCACTGTCATTCCTATTGACT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTCTAGTAAAGTTTCTAATAAGCCACTGTCATTCCTATTGACT  1078

seq1  AGGCAGCAAGAAGACAGTGGTAGGACAGTCACTAAGGGATTTGTACGGCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCAAGAAGACAGTGGTAGGACAGTCACTAAGGGATTTGTACGGCT  1128

seq1  ATGTAGACTACCATAAATTTAAACATTGATTATTTCTGATTATATATTTT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACTACCATAAATTTAAACATTGATTATTTCTGATTATATATTTT  1178

seq1  ATAAGACTCAATCTTTTATCACAATATTTAAGGAATTC  1232
      ||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTCAATCTTTTATCACAATATTTAAGGAATTC  1216

seq1: chr9_32208605_32209577
seq2: B6Ng01-101O15.g_69_1036

seq1  GAATTCAAAAATAATTTAATCTCTACAGCCAGATGCACACAGCTGGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAATAATTTAATCTCTACAGCCAGATGCACACAGCTGGACTC  50

seq1  TTGGAGAGGAGCCCTACAAAAGGGGATTTGTACATTCATTGGGCTAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGGAGCCCTACAAAAGGGGATTTGTACATTCATTGGGCTAGGAA  100

seq1  CCAGCATGTGCCTCCGGCCAGCCCACCTTTGAATGTTCTGGGTGTTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGTGCCTCCGGCCAGCCCACCTTTGAATGTTCTGGGTGTTCTGG  150

seq1  ACACAAGCACACTTCAGGCAGGGAGAACCCCAGCCATAGAGATGGCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCACACTTCAGGCAGGGAGAACCCCAGCCATAGAGATGGCTACC  200

seq1  AAGTGTTTCCTTGCCTTAGGTTCTGCTTTAAGCATGAAAGATATCTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTCCTTGCCTTAGGTTCTGCTTTAAGCATGAAAGATATCTTCTC  250

seq1  TTTTTAACAGCCACAGCAACCTTGGGAGGCCAGTACCATTACCATGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACAGCCACAGCAACCTTGGGAGGCCAGTACCATTACCATGCCTA  300

seq1  TTTTTTGTGTGAGGCAGCTGAAATAAGAGTATTGCCCAGCAACAGTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTGTGAGGCAGCTGAAATAAGAGTATTGCCCAGCAACAGTAGTA  350

seq1  ACAGGCTGGGAATCAGACACAGCCTATCTACCTGGAAAGTCCGTGAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGGGAATCAGACACAGCCTATCTACCTGGAAAGTCCGTGAGTTT  400

seq1  AATTCTCCTCTCTGAATCCTGAGATAGATTCCCCCTCTGAGACAACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCTCTCTGAATCCTGAGATAGATTCCCCCTCTGAGACAACACAC  450

seq1  AGGGCCATCAGACATTGACCTAGAATCCACAGAGGGTCAGTGCCCTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCATCAGACATTGACCTAGAATCCACAGAGGGTCAGTGCCCTCTGT  500

seq1  CTGGTCATGCACTTTGGGAAACGTGAGTCATAGCACATGTGGAAGCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATGCACTTTGGGAAACGTGAGTCATAGCACATGTGGAAGCCCCT  550

seq1  GAGCAGGCTTAGCAAGTACTTCTTACATTATGGGATTTTGGAGGGGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGCTTAGCAAGTACTTCTTACATTATGGGATTTTGGAGGGGAGGA  600

seq1  AGATGTAGGTAATCTGCTTGGTAGAACTCCAGAATTACTGTAGGAGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGGTAATCTGCTTGGTAGAACTCCAGAATTACTGTAGGAGTCCT  650

seq1  GTAGACTTATCTAGTTTGTCCGTGCAACCAGTTGCATATATATGTACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTTATCTAGTTTGTCCGTGCAACCAGTTGCATATATATGTACATG  700

seq1  TGTGTATATATACTCATGTGTTAATATACATACATGGATGTTTAATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATATACTCATGTGTTAATATACATACATGGATGTTTAATATAT  750

seq1  TTAAAACACGCAAATATTTATTTTAAATATTTAAATGTAATA-TTTCAAT  799
      || |||||||||||||||||||||||   ||||||||||||| |||||||
seq2  TT-AAACACGCAAATATTTATTTTAATATTTTAAATGTAATATTTTCAAT  799

seq1  AAATATAAATATAAATATAAATATAATAATATAGTTAAAATATCTATTTA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  AAATATAAATATAAATATAAATATAATAATATAGGTAAAATATCTATTT-  848

seq1  ATACATATGCATTGAATACATACACACACCAATTGCATGTGCTAGGCCTT  899
      ||||||||||| ||||||||| ||||||||||||||||||||||||||| 
seq2  ATACATATGCA-TGAATACATTCACACACCAATTGCATGTGCTAGGCCTA  897

seq1  ATACTTATGCTATAGACACATATAATTAAAATCTGTGTAACATTTTATTA  949
       | ||  |||||||||||| | ||||||||||  ||||||||||||| ||
seq2  TTCCTATTGCTATAGACAC-TTTAATTAAAATTCGTGTAACATTTTA-TA  945

seq1  CAGTCTCTAAGGTAGAGGTGTCTT  973
      | |||||||||| | |||||||||
seq2  CCGTCTCTAAGG-AAAGGTGTCTT  968