BAC Information

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BAC

Clone NameB6Ng01-102B05
Chromosome9 (Build37)
Map Location 92,054,351 - 92,106,093
singlet/doubletdoublet
Overlap geneLOC331000
Upstream geneLOC621576, Zic1, Zic4
Downstream genePlscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102B05.bB6Ng01-102B05.g
ACCDH911068DH911069
length9951,094
definitionDH911068|Mus musculus domesticus DNA, BAC clone: B6Ng01-102B05, 5' end.DH911069|Mus musculus domesticus DNA, BAC clone: B6Ng01-102B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,054,351 - 92,055,076)(92,104,981 - 92,106,093)
sequence
gaattccttggatactttatctacaaacagagccaaagttttgtttatag
atgatgctatatatcatggtgcagttcatagggataattaaaatattaca
ttgcaaaagtctattactcttcggtctacctactttatgctggaaggtgg
attcctctgtttattcctgaacctgtacagcacagctgattctgtcaatc
tccctcatccataagaattatatttgatattaggtcatacgttgaggtat
acactgagccatttggagtcaagctttctgcaggtgggaaaacacggacc
tattctaaattcctccacatgcagcaaccaagtgggaccagcacaactgt
ggaggaagctaccttttcttcagtgtacaattttttttgcctctttatca
aaaatcagttattcatagatgtgtggacttgtgtccaggtccgcagctct
atttctctgatcgttgttctgccagtgccgtgttggatcattagtatcca
tctgttgtgcagatttaaaacaggaatgctgagacctccagcagttcttt
tactgttcagggttgttttagttatcctgggcttctgtgtttccatatga
agtttaagcgtttttttgtttttgtttttgttttttcaatttctgtgaag
aatcattttgtgggtttccttgaatctataggtgtataggtgtttttttt
aatatagtggctacattaagaatattaatattagcaatctataatcacag
gaggtctctcttcactttatatctttttaaatgtccagttaattctctat
ttttttaaattaatcattttattcatttacatttcaccctttcaggttac
ctctccaccaaaccccacattccttcaccctctgccccctcccatttgtc
tctatgaggatgctccttcacctttcatgcacacccgactcaccccttag
catccactactctgggccatatcaagccctccccacctctcattg
gaattctattttgtaaatgctcttatctcttgctaagctcttttcctcta
tgtttaaacgaacagctctgtttatttatactgaattactttccttcctg
ggtctggaaatacaaaactctagcccttcttggagagatctggttgattt
cttatcatttctgtgggtaacaattaaaaccagttttaaacatatttaat
caaacaaagactgatttttgcaaaagtataaatatcagcaaaacaatgtg
ggatatcgttaataaaattactaaagattagctactgaacactagcttca
gtacaattaagaaatttcattggggggtggcggtgaggttgagatgggac
ttgattttgtagctcagtgtggccttgaactcaagtggtggtttgggtga
gaatgtcctccataggtttgtgtatatgaacattgattccccagttcagc
cctgtttaggaatgttcaggaggaggggcctgactacagagctttggagg
cgtatggaagagtggggtgtgggaatcagggatgctcgccagcacggtat
taattctgaagtgtttccatttactgtgtgttcttacatctgcactgctt
cagggactcaggttctgactcttttgctttcgtttgttttccatttgtca
ttttgatgtctcagatcccttaactggcagagacttcatagtagtcagat
aaaatcctggtagagcagactgctctcactaatttagcgtctatctatat
ggctatttaaatttctggcatgaatctgcttggtgctttagttaattgcc
ttatggaatataactgtgcctctgctacttgaacaaatgggaggtatcca
tcttttctccgatccttacacatattatttacccagtctccaactttccc
aatataagtaaaatatatttactacacagaaatttaaatcatctcagaat
gtcagattgtttctcagagatatgaaagtgtgttataaaatagcttattc
tttatttcgttagataccatgagatttaaaaggagaaataaaatagagag
tccaaggagctactttggaagaatttttagaatcaagtcttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92054351_92055076
seq2: B6Ng01-102B05.b_47_772

seq1  GAATTCCTTGGATACTTTATCTACAAACAGAGCCAAAGTTTTGTTTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGATACTTTATCTACAAACAGAGCCAAAGTTTTGTTTATAG  50

seq1  ATGATGCTATATATCATGGTGCAGTTCATAGGGATAATTAAAATATTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTATATATCATGGTGCAGTTCATAGGGATAATTAAAATATTACA  100

seq1  TTGCAAAAGTCTATTACTCTTCGGTCTACCTACTTTATGCTGGAAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAAGTCTATTACTCTTCGGTCTACCTACTTTATGCTGGAAGGTGG  150

seq1  ATTCCTCTGTTTATTCCTGAACCTGTACAGCACAGCTGATTCTGTCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTGTTTATTCCTGAACCTGTACAGCACAGCTGATTCTGTCAATC  200

seq1  TCCCTCATCCATAAGAATTATATTTGATATTAGGTCATACGTTGAGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATCCATAAGAATTATATTTGATATTAGGTCATACGTTGAGGTAT  250

seq1  ACACTGAGCCATTTGGAGTCAAGCTTTCTGCAGGTGGGAAAACACGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGCCATTTGGAGTCAAGCTTTCTGCAGGTGGGAAAACACGGACC  300

seq1  TATTCTAAATTCCTCCACATGCAGCAACCAAGTGGGACCAGCACAACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAAATTCCTCCACATGCAGCAACCAAGTGGGACCAGCACAACTGT  350

seq1  GGAGGAAGCTACCTTTTCTTCAGTGTACAATTTTTTTTGCCTCTTTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGCTACCTTTTCTTCAGTGTACAATTTTTTTTGCCTCTTTATCA  400

seq1  AAAATCAGTTATTCATAGATGTGTGGACTTGTGTCCAGGTCCGCAGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTTATTCATAGATGTGTGGACTTGTGTCCAGGTCCGCAGCTCT  450

seq1  ATTTCTCTGATCGTTGTTCTGCCAGTGCCGTGTTGGATCATTAGTATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGATCGTTGTTCTGCCAGTGCCGTGTTGGATCATTAGTATCCA  500

seq1  TCTGTTGTGCAGATTTAAAACAGGAATGCTGAGACCTCCAGCAGTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTGCAGATTTAAAACAGGAATGCTGAGACCTCCAGCAGTTCTTT  550

seq1  TACTGTTCAGGGTTGTTTTAGTTATCCTGGGCTTCTGTGTTTCCATATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCAGGGTTGTTTTAGTTATCCTGGGCTTCTGTGTTTCCATATGA  600

seq1  AGTTTAAGCGTTTTTTTGTTTTTGTTTTTGTTTTTTCAATTTCTGTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGCGTTTTTTTGTTTTTGTTTTTGTTTTTTCAATTTCTGTGAAG  650

seq1  AATCATTTTGTGGGTTTCCTTGAATCTATAGGTGTATAGGTGTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTGTGGGTTTCCTTGAATCTATAGGTGTATAGGTGTTTTTTTT  700

seq1  AATATAGTGGCTACATTAAGAATATT  726
      ||||||||||||||||||||||||||
seq2  AATATAGTGGCTACATTAAGAATATT  726

seq1: chr9_92104981_92106093
seq2: B6Ng01-102B05.g_68_1161 (reverse)

seq1  CAAAAGACTTGAATTTCTAAAATATCTTTTCAAATGTAGCTCCTTTTGAC  50
      ||||||||||||  ||||||||  ||  ||| || |||||||| || |||
seq2  CAAAAGACTTGA--TTCTAAAAATTC--TTCCAAAGTAGCTCC-TTGGAC  45

seq1  TTTCTTAATTTTATTTCTTCTTTTTAAATTCTCATGTATTCTTAACGAAT  100
      | |||  ||||||||||| |||||  || |||||||   || ||||||| 
seq2  TCTCT--ATTTTATTTCTCCTTTT--AAATCTCATGGTATC-TAACGAAA  90

seq1  TAAAGAATAAGCCTTATTTTATAACACACTTTTCATATTCTCTGAGAAAC  150
      ||||||||||||  ||||||||||||||| ||||||| ||||||||||||
seq2  TAAAGAATAAGC--TATTTTATAACACAC-TTTCATA-TCTCTGAGAAAC  136

seq1  AATCTGACATTTCTGAGATGATTTTAAATTTTCTTGTTGTAGTAAATATA  200
      ||||||||| ||||||||||||||  || |||||   |||||||||||||
seq2  AATCTGACA-TTCTGAGATGATTT--AAATTTCT--GTGTAGTAAATATA  181

seq1  TTTTACTTATATTGGGAAAGTTGGAGACTGGGTAAATAATATGTGTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTATATTGGGAAAGTTGGAGACTGGGTAAATAATATGTGTAAGG  231

seq1  ATCGGAGAAAAGATGGATACCTTCCATTTGTTCAAGTAGCAGAGGCACAG  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCGGAGAAAAGATGGATACCTCCCATTTGTTCAAGTAGCAGAGGCACAG  281

seq1  TTATATTCCATAAGGCAATTAACTAAAGCACCAAGCAGATTCATGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCCATAAGGCAATTAACTAAAGCACCAAGCAGATTCATGCCAGA  331

seq1  AATTTAAATAGCCATATAGATAGACGCTAAATTAGTGAGAGCAGTCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATAGCCATATAGATAGACGCTAAATTAGTGAGAGCAGTCTGCT  381

seq1  CTACCAGGATTTTATCTGACTACTATGAAGTCTCTGCCAGTTAAGGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGGATTTTATCTGACTACTATGAAGTCTCTGCCAGTTAAGGGATC  431

seq1  TGAGACATCAAAATGACAAATGGAAAACAAACGAAAGCAAAAGAGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATCAAAATGACAAATGGAAAACAAACGAAAGCAAAAGAGTCAGA  481

seq1  ACCTGAGTCCCTGAAGCAGTGCAGATGTAAGAACACACAGTAAATGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTCCCTGAAGCAGTGCAGATGTAAGAACACACAGTAAATGGAAA  531

seq1  CACTTCAGAATTAATACCGTGCTGGCGAGCATCCCTGATTCCCACACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAGAATTAATACCGTGCTGGCGAGCATCCCTGATTCCCACACCCC  581

seq1  ACTCTTCCATACGCCTCCAAAGCTCTGTAGTCAGGCCCCTCCTCCTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCATACGCCTCCAAAGCTCTGTAGTCAGGCCCCTCCTCCTGAAC  631

seq1  ATTCCTAAACAGGGCTGAACTGGGGAATCAATGTTCATATACACAAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAAACAGGGCTGAACTGGGGAATCAATGTTCATATACACAAACCT  681

seq1  ATGGAGGACATTCTCACCCAAACCACCACTTGAGTTCAAGGCCACACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGACATTCTCACCCAAACCACCACTTGAGTTCAAGGCCACACTGA  731

seq1  GCTACAAAATCAAGTCCCATCTCAACCTCACCGCCACCCCCCAATGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAAATCAAGTCCCATCTCAACCTCACCGCCACCCCCCAATGAAAT  781

seq1  TTCTTAATTGTACTGAAGCTAGTGTTCAGTAGCTAATCTTTAGTAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATTGTACTGAAGCTAGTGTTCAGTAGCTAATCTTTAGTAATTTT  831

seq1  ATTAACGATATCCCACATTGTTTTGCTGATATTTATACTTTTGCAAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACGATATCCCACATTGTTTTGCTGATATTTATACTTTTGCAAAAAT  881

seq1  CAGTCTTTGTTTGATTAAATATGTTTAAAACTGGTTTTAATTGTTACCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTGTTTGATTAAATATGTTTAAAACTGGTTTTAATTGTTACCCA  931

seq1  CAGAAATGATAAGAAATCAACCAGATCTCTCCAAGAAGGGCTAGAGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGATAAGAAATCAACCAGATCTCTCCAAGAAGGGCTAGAGTTTT  981

seq1  GTATTTCCAGACCCAGGAAGGAAAGTAATTCAGTATAAATAAACAGAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCAGACCCAGGAAGGAAAGTAATTCAGTATAAATAAACAGAGCT  1031

seq1  GTTCGTTTAAACATAGAGGAAAAGAGCTTAGCAAGAGATAAGAGCATTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTTTAAACATAGAGGAAAAGAGCTTAGCAAGAGATAAGAGCATTTA  1081

seq1  CAAAATAGAATTC  1113
      |||||||||||||
seq2  CAAAATAGAATTC  1094