BAC Information

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BAC

Clone NameB6Ng01-102L01
Chromosome9 (Build37)
Map Location 90,968,510 - 90,969,687
singlet/doubletsinglet
Overlap genenone
Upstream geneCtsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102L01.bB6Ng01-102L01.g
ACCDH911507DH911508
length1,1751,148
definitionDH911507|Mus musculus domesticus DNA, BAC clone: B6Ng01-102L01, 5' end.DH911508|Mus musculus domesticus DNA, BAC clone: B6Ng01-102L01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatgactatttcatttaatttatcctcaccaagatccattatcc
actaatcattctggttgttcagtattgatcatttatgacaccattaaaca
ataagtttgaagatagagaatattttagaaaacaggttcaaaatatagga
tttgtagaattatccaaacaagaagcatcattaaatgattggaacgcatc
ctttgaaagattttagtcttcaacctcgtattatgacttctccaatgttg
gcagccagactaaaacctcaacccttactgttttgcttataggtaggtca
gccaattgctctttccccaaagcagtgacaatgcttatcaattggattat
tgaagcctgggtgcttcctgggcaagtcttcactgtatttctctcaatga
actgagtgtttccattctgtttttatttcctgacagtacaaagtatgtct
agagttcattcacataatgaatggggtgggaaattaattccgtcgggact
atgattgtttggtttgccacgagacacacgagacatttatgactttcccc
ttctgtgctattccagtgccctgttgaaagattgcagcataaatctgcag
gcatgttctgcaaagttcatatctgtattcgttacctttaatattaatag
ggatgtatctttaaagtgagtaaattgagaaagtggctgatactatagtt
tataaaagaagattagtgggtttaatatgcactggagagtaaaagaaaaa
tcttattactgtatggagaaattacctcataaagaagctaatacagcagg
ctagggagcaatttttaacaaggattttatgatgtgcaagtgtaggcagt
taatgaacttatctttctagttattttcagattgtaatgatgcttttctt
ttctagttcttgtgctttaaaaaagtaaaatacatttaatcacctacaat
aaacctaaattcattactttaataaatcagtacatcttatgctgtacact
taaatgttcttgcaataatgccaggaggcagatcaggtgcttaactttag
cacagattagaggcaaagggtagccatgcagctatttatatttaataaac
cttctcatttgatagtgcagtcattggagaagatctggacttccttcaag
ctattgggacttagaaaggccagag
gaattctcacctgaggaataccaaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaggatcaaaaactcaggtgatagc
agatgttggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattacaagcttgtacaaccactccggaaatcagtttggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccgtgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggaggttatcatcctgagtgaagtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggataatagcccagaaact
taggatacccaagatataagatacaacttgccaaacgcatgaaattcaag
aagaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacccatagaaggagctacagagacaaaatttggagctgtgacga
aaggatggaccatctagtgactcccatatacagggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagatttcgctgaaa
ggactcagttatagctctctcttgtgagactatgacggggcctagcaaac
acagaagtggatgatcacagtcagctattggatgggtcacacgctcctat
ggaggagctagagaattaccaagagctatagggactgcaccctatagtgg
aacaacatatgactatcagtacccggagctctgtctttagctgcatatgt
atcaaatggcttagtcgcatcactgcaagaagccactgaactgcacctta
attgcccagttacaggaacgccaggcaaaatgcaatatgttggctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90968510_90969687
seq2: B6Ng01-102L01.b_47_1221 (reverse)

seq1  CTCTG--CTTTCTAAGT-CCAATAGCTGGGAAGGGAGT-CAGATCTTCTC  46
      |||||  |||||||||| |||||||||  ||||| ||| |||||||||||
seq2  CTCTGGCCTTTCTAAGTCCCAATAGCT-TGAAGGAAGTCCAGATCTTCTC  49

seq1  AAAATGACTGCACTATCAAAATGAGAAGGTTTAATTTAAATAATAAATAA  96
        ||||||||||||||| |||||||||||||||  |||||| |||||| |
seq2  -CAATGACTGCACTATC-AAATGAGAAGGTTTA--TTAAAT-ATAAAT-A  93

seq1  GCTGCATGGCTACCTTTTG-CTCTAATCTGTGCTAAAGTTTAGCACCTGA  145
      |||||||||||||| |||| |||||||||||||||||||| |||||||||
seq2  GCTGCATGGCTACCCTTTGCCTCTAATCTGTGCTAAAGTTAAGCACCTGA  143

seq1  TCTGCCTCCTGGCATTATTGCAAGAACATTTAAGTGTACAGCATAAGATT  195
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTGCCTCCTGGCATTATTGCAAGAACATTTAAGTGTACAGCATAAGA-T  192

seq1  GTACTTGATTTATTAAAGTAATGAA-TTAGGTTTATTGTAGGTGATTAAA  244
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTAC-TGATTTATTAAAGTAATGAATTTAGGTTTATTGTAGGTGATTAAA  241

seq1  TGTATTTTAC-TTTTTAAAGCACAAGAACTAGAAAAGAAAAGCATCATTA  293
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTACTTTTTTAAAGCACAAGAACTAGAAAAGAAAAGCATCATTA  291

seq1  CAATCTGAAAATAACTAGAAAGATAAGTTCATTAACTTGCCTACACTTGC  343
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAATCTGAAAATAACTAGAAAGATAAGTTCATTAAC-TGCCTACACTTGC  340

seq1  ACATCATAAAATCCTTGTTAAAAATTGCTCCCTAGCCTGCTGTATTAGCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATAAAATCCTTGTTAAAAATTGCTCCCTAGCCTGCTGTATTAGCT  390

seq1  TCTTTATGAGGTAATTTCTCCATACAGTAATAAGATTTTTCTTTTACTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGAGGTAATTTCTCCATACAGTAATAAGATTTTTCTTTTACTCT  440

seq1  CCAGTGCATATTAAACCCACTAATCTTCTTTTATAAACTATAGTTTCAGC  493
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAGTGCATATTAAACCCACTAATCTTCTTTTATAAACTATAGTATCAGC  490

seq1  CACTTTCTCAATTTACTCACTTTAAAGATACATCCCTATTAATATTAAAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTCAATTTACTCACTTTAAAGATACATCCCTATTAATATTAAAG  540

seq1  GTAACGAATACAGATATGAACTTTGCAGAACATGCCTGCAGATTTATGCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGAATACAGATATGAACTTTGCAGAACATGCCTGCAGATTTATGCT  590

seq1  GCAATCTTTCAACAGGGCACTGGAATAGCACAGAAGGGGAAAGTCATAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTTCAACAGGGCACTGGAATAGCACAGAAGGGGAAAGTCATAAA  640

seq1  TGTCTCGTGTGTCTCGTGGCAAACCAAACAATCATAGTCCCGACGGAATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGTGTGTCTCGTGGCAAACCAAACAATCATAGTCCCGACGGAATT  690

seq1  AATTTCCCACCCCATTCATTATGTGAATGAACTCTAGACATACTTTGTAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCACCCCATTCATTATGTGAATGAACTCTAGACATACTTTGTAC  740

seq1  TGTCAGGAAATAAAAACAGAATGGAAACACTCAGTTCATTGAGAGAAATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGAAATAAAAACAGAATGGAAACACTCAGTTCATTGAGAGAAATA  790

seq1  CAGTGAAGACTTGCCCAGGAAGCACCCAGGCTTCAATAATCCAATTGATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGACTTGCCCAGGAAGCACCCAGGCTTCAATAATCCAATTGATA  840

seq1  AGCATTGTCACTGCTTTGGGGAAAGAGCAATTGGCTGACCTACCTATAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTCACTGCTTTGGGGAAAGAGCAATTGGCTGACCTACCTATAAG  890

seq1  CAAAACAGTAAGGGTTGAGGTTTTAGTCTGGCTGCCAACATTGGAGAAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGTAAGGGTTGAGGTTTTAGTCTGGCTGCCAACATTGGAGAAGT  940

seq1  CATAATACGAGGTTGAAGACTAAAATCTTTCAAAGGATGCGTTCCAATCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATACGAGGTTGAAGACTAAAATCTTTCAAAGGATGCGTTCCAATCA  990

seq1  TTTAATGATGCTTCTTGTTTGGATAATTCTACAAATCCTATATTTTGAAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGATGCTTCTTGTTTGGATAATTCTACAAATCCTATATTTTGAAC  1040

seq1  CTGTTTTCTAAAATATTCTCTATCTTCAAACTTATTGTTTAATGGTGTCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTAAAATATTCTCTATCTTCAAACTTATTGTTTAATGGTGTCA  1090

seq1  TAAATGATCAATACTGAACAACCAGAATGATTAGTGGATAATGGATCTTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATCAATACTGAACAACCAGAATGATTAGTGGATAATGGATCTTG  1140

seq1  GTGAGGATAAATTAAATGAAATAGTCATAGAATTC  1178
      |||||||||||||||||||||||||||||||||||
seq2  GTGAGGATAAATTAAATGAAATAGTCATAGAATTC  1175