BAC Information

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BAC

Clone NameB6Ng01-102M12
Chromosome9 (Build37)
Map Location 69,962,262 - 70,112,205
singlet/doubletdoublet
Overlap gene6430514L14Rik, Myo1e
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3
Downstream geneCcnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102M12.bB6Ng01-102M12.g
ACCDH911575DH911576
length1,132665
definitionDH911575|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M12, 5' end.DH911576|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,111,059 - 70,112,205)(69,962,262 - 69,962,926)
sequence
gaattcatgattgaaaaaagaatcactaaggttgaatcatcccagtgggt
tgctgggagatcagatttgagtttaagatcccaaataagtttaatcaccg
aagaggggaaaagacagaaacagataccactgagagggaaagaacgagag
ggaggctcagaaaagaaacaaataatcacctcacttgcgtttgactggac
ctgtcttccaagaaccccttaaacagaacagctaggctagaagatgggat
ttgtgtgaaagagatcagagtcggggttaaataggaaaaatagaagccat
caaggagggccaggaaggctgggctgagtgcttggcacaggagacaggaa
gcaggcggccgagatggaatctccatcagagggtgcagtccaggtcacac
agaaaaaccaccctccttccaaagggaagaaaggctcaagccactgtcgc
cagagtctcactcagcaagcaacccaccacgcaaccctgcatggtgttgt
caccggctttgggggatgtacctctgtttagctgcctagcctgataatag
ccatgttgcttactgtggggttattattaggctgggctgtaagtctctgt
gtgtgctcaacctcgcctaccagaaaacaagagagggcaggaggagggga
cccaaactagcagagctgctgaggctgctttttttcatcccagagccggg
agaaaacaaacagccctataagatcccaatttctaagcacacttaaaggt
agcaattccagcctaaatgcccctgggcttggtaatgttccaccctagtg
aaagggcaaaattatcaggcacagagaggccagaggcatcccgctgtgga
tgaagggtccatgccagcttctagtaaaatgaaggattacagtaattcag
cccaagcgatttcccgttttaactgctgttcctgttttccacaccgggcc
tcacaaggatctttagaccgaatgcaggttcccaggccattccttcactg
gggacattctcgccatcactcatcactgtggtcaatacggcaggtggact
gttttctactgacttcatgtggcggcaacatacttctatggagagattct
tgcctctgcaggcgaattgagccaggtctctg
gaattcctctttcttggatttctcacattacatttataatcagaaaaaaa
aatgtggctttttcctttacagcttagaaataagcacatttaacttgtag
ggttcttatgcagacaagtattgcattagcaatgctttgaagaatataga
aaagaaagagatctgagcttaacatggtattcacattactaaaaagttac
gtgaagagacagagatcattagaaggcttattgtttaaggaaattcaaga
gcgaaactacagaaacccagtaacatcagaagtgtgtcctggtctgccat
gttggagctttcatttagaatggggctggcctttggcaaggcaagttctt
atttgtcagtctgagaaactgtcttttagttagccagtaagcacagagta
ccaggcatgcccttcagagacagggttatagcaggaaagactacaggctg
ctcaagtatatggccaagtcttttggttaaaaatgtcttcctctccaaga
gagaagaagccagtcatctccagtcatggtttattattgaagaagcccca
cccacccacccacccacccacaaggccatcctgtaatggtatttatgcat
gtgaggtgaccatccaggccctcagaggctcctaggaactgccagggaag
ggagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70111059_70112205
seq2: B6Ng01-102M12.b_47_1178 (reverse)

seq1  CAGAGA-CTGGCTCAACTCTGCCCTGCAGAGGCAAGAATCCTCTCCATAG  49
      |||||| ||||||||| ||   ||||||||||||||||| ||||||||||
seq2  CAGAGACCTGGCTCAATTC--GCCTGCAGAGGCAAGAAT-CTCTCCATAG  47

seq1  AAGTTATGGTGGCCGCACATTGAGGTCAGTAGGAAAACAGTCCACTTGCC  99
      ||| |||| || |  |||| ||| ||||||| ||||||||||||| ||||
seq2  AAG-TATGTTGCCGCCACA-TGAAGTCAGTA-GAAAACAGTCCACCTGCC  94

seq1  GTATTGAACACAGTGATGAGTGAATGGCGAAGAATGTTCCCCAGTGAAGG  149
      ||||||| |||||||||||||| |||||| |||||| ||||||||||| |
seq2  GTATTGACCACAGTGATGAGTG-ATGGCG-AGAATG-TCCCCAGTGAA-G  140

seq1  GAATGGCCTGGGAACCCTGCATTCGGTTCTAAAGATCCTTGTGAGGCCCG  199
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  GAATGGCCTGGGAA-CCTGCATTCGG-TCTAAAGATCCTTGTGAGGCCCG  188

seq1  GTGTGGAAAACAGGAAACAGCAGTTAAAACGGGAAATCGCTTTGGGCTGA  249
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GTGTGGAAAACAGG-AACAGCAGTTAAAACGGGAAATCGC-TTGGGCTGA  236

seq1  ATTACTGTAATCCTTCATTTTACTTAGAAGCTGGCATGGACCCTTCATCC  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTACTGTAATCCTTCATTTTAC-TAGAAGCTGGCATGGACCCTTCATCC  285

seq1  ACAGCGGGATGCCTCTGGCCTCTCTGTGCCCTGATAATTTTGCCCTTTCA  349
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACAGCGGGATGCCTCTGGCCTCTCTGTG-CCTGATAATTTTGCCCTTTCA  334

seq1  CTAGGGTGGAACATTACCAAGCCCAGGGGCATTTAGGCTGGAATTGCTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTGGAACATTACCAAGCCCAGGGGCATTTAGGCTGGAATTGCTAC  384

seq1  CTTTAAGTGTGCTTAGAAATTGGGATCTTATAGGGCTGTTTGTTTTCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTGTGCTTAGAAATTGGGATCTTATAGGGCTGTTTGTTTTCTCC  434

seq1  CGGCTCTGGGATGAAAAAAAGCAGCCTCAGCAGCTCTGCTAGTTTGGGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTGGGATGAAAAAAAGCAGCCTCAGCAGCTCTGCTAGTTTGGGTC  484

seq1  CCCTCCTCCTGCCCTCTCTTGTTTTCTGGTAGGCGAGGTTGAGCACACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCCTGCCCTCTCTTGTTTTCTGGTAGGCGAGGTTGAGCACACAC  534

seq1  AGAGACTTACAGCCCAGCCTAATAATAACCCCACAGTAAGCAACATGGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTACAGCCCAGCCTAATAATAACCCCACAGTAAGCAACATGGCT  584

seq1  ATTATCAGGCTAGGCAGCTAAACAGAGGTACATCCCCCAAAGCCGGTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGGCTAGGCAGCTAAACAGAGGTACATCCCCCAAAGCCGGTGAC  634

seq1  AACACCATGCAGGGTTGCGTGGTGGGTTGCTTGCTGAGTGAGACTCTGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATGCAGGGTTGCGTGGTGGGTTGCTTGCTGAGTGAGACTCTGGC  684

seq1  GACAGTGGCTTGAGCCTTTCTTCCCTTTGGAAGGAGGGTGGTTTTTCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGCTTGAGCCTTTCTTCCCTTTGGAAGGAGGGTGGTTTTTCTGT  734

seq1  GTGACCTGGACTGCACCCTCTGATGGAGATTCCATCTCGGCCGCCTGCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGGACTGCACCCTCTGATGGAGATTCCATCTCGGCCGCCTGCTT  784

seq1  CCTGTCTCCTGTGCCAAGCACTCAGCCCAGCCTTCCTGGCCCTCCTTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCCTGTGCCAAGCACTCAGCCCAGCCTTCCTGGCCCTCCTTGAT  834

seq1  GGCTTCTATTTTTCCTATTTAACCCCGACTCTGATCTCTTTCACACAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTATTTTTCCTATTTAACCCCGACTCTGATCTCTTTCACACAAAT  884

seq1  CCCATCTTCTAGCCTAGCTGTTCTGTTTAAGGGGTTCTTGGAAGACAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTCTAGCCTAGCTGTTCTGTTTAAGGGGTTCTTGGAAGACAGGT  934

seq1  CCAGTCAAACGCAAGTGAGGTGATTATTTGTTTCTTTTCTGAGCCTCCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAAACGCAAGTGAGGTGATTATTTGTTTCTTTTCTGAGCCTCCCT  984

seq1  CTCGTTCTTTCCCTCTCAGTGGTATCTGTTTCTGTCTTTTCCCCTCTTCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTCTTTCCCTCTCAGTGGTATCTGTTTCTGTCTTTTCCCCTCTTCG  1034

seq1  GTGATTAAACTTATTTGGGATCTTAAACTCAAATCTGATCTCCCAGCAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAAACTTATTTGGGATCTTAAACTCAAATCTGATCTCCCAGCAAC  1084

seq1  CCACTGGGATGATTCAACCTTAGTGATTCTTTTTTCAATCATGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGATGATTCAACCTTAGTGATTCTTTTTTCAATCATGAATTC  1132

seq1: chr9_69962262_69962926
seq2: B6Ng01-102M12.g_68_732

seq1  GAATTCCTCTTTCTTGGATTTCTCACATTACATTTATAATCAGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTTCTTGGATTTCTCACATTACATTTATAATCAGAAAAAAA  50

seq1  AATGTGGCTTTTTCCTTTACAGCTTAGAAATAAGCACATTTAACTTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGCTTTTTCCTTTACAGCTTAGAAATAAGCACATTTAACTTGTAG  100

seq1  GGTTCTTATGCAGACAAGTATTGCATTAGCAATGCTTTGAAGAATATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTATGCAGACAAGTATTGCATTAGCAATGCTTTGAAGAATATAGA  150

seq1  AAAGAAAGAGATCTGAGCTTAACATGGTATTCACATTACTAAAAAGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAGATCTGAGCTTAACATGGTATTCACATTACTAAAAAGTTAC  200

seq1  GTGAAGAGACAGAGATCATTAGAAGGCTTATTGTTTAAGGAAATTCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGACAGAGATCATTAGAAGGCTTATTGTTTAAGGAAATTCAAGA  250

seq1  GCGAAACTACAGAAACCCAGTAACATCAGAAGTGTGTCCTGGTCTGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAACTACAGAAACCCAGTAACATCAGAAGTGTGTCCTGGTCTGCCAT  300

seq1  GTTGGAGCTTTCATTTAGAATGGGGCTGGCCTTTGGCAAGGCAAGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGCTTTCATTTAGAATGGGGCTGGCCTTTGGCAAGGCAAGTTCTT  350

seq1  ATTTGTCAGTCTGAGAAACTGTCTTTTAGTTAGCCAGTAAGCACAGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCAGTCTGAGAAACTGTCTTTTAGTTAGCCAGTAAGCACAGAGTA  400

seq1  CCAGGCATGCCCTTCAGAGACAGGGTTATAGCAGGAAAGACTACAGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATGCCCTTCAGAGACAGGGTTATAGCAGGAAAGACTACAGGCTG  450

seq1  CTCAAGTATATGGCCAAGTCTTTTGGTTAAAAATGTCTTCCTCTCCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTATATGGCCAAGTCTTTTGGTTAAAAATGTCTTCCTCTCCAAGA  500

seq1  GAGAAGAAGCCAGTCATCTCCAGTCATGGTTTATTATTGAAGAAGCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAGCCAGTCATCTCCAGTCATGGTTTATTATTGAAGAAGCCCCA  550

seq1  CCCACCCACCCACCCACCCACAAGGCCATCCTGTAATGGTATTTATGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACCCACCCACCCACAAGGCCATCCTGTAATGGTATTTATGCAT  600

seq1  GTGAGGTGACCATCCAGGCCCTCAGAGGCTCCTAGGAACTGCCAGGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGACCATCCAGGCCCTCAGAGGCTCCTAGGAACTGCCAGGGAAG  650

seq1  GGAGGGAGGGAGGGA  665
      |||||||||||||||
seq2  GGAGGGAGGGAGGGA  665