BAC Information

Click to search

BAC

Clone NameB6Ng01-103F04
Chromosome9 (Build37)11 (Build37)
Map Location 31,450,855 - 31,451,91557,919,942 - 57,920,269
singlet/doubletsingletsinglet
Overlap geneEG666576
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
Downstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103F04.bB6Ng01-103F04.g
ACCDH911949DH911950
length1,050912
definitionDH911949|Mus musculus domesticus DNA, BAC clone: B6Ng01-103F04, 5' end.DH911950|Mus musculus domesticus DNA, BAC clone: B6Ng01-103F04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,450,855 - 31,451,915)(57,919,942 - 57,920,269)
sequence
gaattccagcctggcatctgtccaagatgagatttattcatctagagaac
cctacaactggtgttctctagggatcagcgtatttcagaaaggacgagga
gagtcagttatcagtgcagatcgtgctaacacatgtggatgtgtgaggag
gaagcctcaggagaaaagcaaatttgtttctggcatcctttgagattcat
ctggacgaggttggtgaacccagagacaactgggtgctttgtgagtccca
gagataggaggtactctgtatgagacacaggaaagccagagtggaatgcc
tgtgcttcgactgtaatgctgtcctgagctgccatgcaggcaacttttca
attacttgatatcagagagatttcatcttttggaagagaaaacagaggat
gactagcctgcagcaacaatcagtagggccttgccagaatcactcttgga
aactgggagctttgaattccttctctcagattaacatcagagctgagaac
caccagctacctctggaatgctggaaacagctttccagtcatgggtgtgg
cacctgctcagatcctaaccctattcccatggagactttctatcagcgaa
agtggccaatgacacagggtatcgacaccccagtgggggtggcttctacc
ataatgaatgtgaagttggtgaggacaccagggaggagggaaggtgagga
gggaagagattttctactgaggaaagatgtgagctacaaaccatgtcccg
gaaatggtctccccatccccgcagaggatgttggggagcctcaagccagt
tcatagacatctttacatcagagagatacccatggcttttaagccaggaa
agaatttttttttcttagagacgaaaatgacaaatgatacatcatcacaa
cctgaatacatgcagtactgacaaaaccttgagacactggcttggtaaga
ttctttggagtgtccatttaaggcagcccttggagctcatcttgatagtc
aggtctacagccaatccacagtcatacgtactcagcaaagcactgaaatc

gaattcaatctccagaaacacacacacacatacacacgcacgagcatgcg
cacacacacgtgcctgtgcatgtgcacacgcatatacatcaaatgaactg
aaatgacatttgtggtggtttgaatatgcttggcccaacaagtgggactg
ttaggaggagtggccttgttgaagtagatgtggtcttgtgggaggaagtg
tgccactgtggggtgggctttgagagcttcctcctagctgcctgaagatg
atagtcttgtttgcctttggaacaagatatagagctctcagctcctctag
tgccatgcctgcctagatactgccatgcttcctgccatgatgataatgaa
ctgaacctcagaacctgtaagccagctccagttaaatgttgtccttttta
aaagttgccttggtaatgctgtctgttcacagcaatggaaaccctaacta
agacaacaactaatataaaattagcagacaagattgctcaaaatagttac
tataatagtcaaaatatatgagatgagaaattcactggatagtaacttag
acattgtgcaagaaggattggtgaacttttccacatagaaatagaaactg
tctaagatgaagcagtgaaagatcagaaagaaagaaagaaagaaagaaag
aaaggaaggaaggaaggaaggaaggaaggaaggaaagaaagaaagaaaga
aagaaagaaagaaagaaagaagaaagaaagaaagaaaggaaagaaagaag
gaaagaaagaaggaaagaaagaaaggaaagaaagaaaggaaagaaagaaa
ggaagaagaagaagaaagaagaagaagaagaaagaaagaagaaagaaaga
agaagaagaagaagaagaaagaagaagaagaagaagaagaagaagaagaa
gaagaagaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_31450855_31451915
seq2: B6Ng01-103F04.b_45_1094

seq1  GAATTCCAGCCTGGCATCTGTCCAAGATGAGATTTATTCATCTAGAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTGGCATCTGTCCAAGATGAGATTTATTCATCTAGAGAAC  50

seq1  CCTACAACTGGTGTTCTCTAGGGATCAGCGTATTTCAGAAAGGACGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAACTGGTGTTCTCTAGGGATCAGCGTATTTCAGAAAGGACGAGGA  100

seq1  GAGTCAGTTATCAGTGCAGATCGTGCTAACACATGTGGATGTGTGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTTATCAGTGCAGATCGTGCTAACACATGTGGATGTGTGAGGAG  150

seq1  GAAGCCTCAGGAGAAAAGCAAATTTGTTTCTGGCATCCTTTGAGATTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCAGGAGAAAAGCAAATTTGTTTCTGGCATCCTTTGAGATTCAT  200

seq1  CTGGACGAGGTTGGTGAACCCAGAGACAACTGGGTGCTTTGTGAGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACGAGGTTGGTGAACCCAGAGACAACTGGGTGCTTTGTGAGTCCCA  250

seq1  GAGATAGGAGGTACTCTGTATGAGACACAGGAAAGCCAGAGTGGAATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGGAGGTACTCTGTATGAGACACAGGAAAGCCAGAGTGGAATGCC  300

seq1  TGTGCTTCGACTGTAATGCTGTCCTGAGCTGCCATGCAGGCAACTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCGACTGTAATGCTGTCCTGAGCTGCCATGCAGGCAACTTTTCA  350

seq1  ATTACTTGATATCAGAGAGATTTCATCTTTTGGAAGAGAAAACAGAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGATATCAGAGAGATTTCATCTTTTGGAAGAGAAAACAGAGGAT  400

seq1  GACTAGCCTGCAGCAACAATCAGTAGGGCCTTGCCAGAATCACTCTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCCTGCAGCAACAATCAGTAGGGCCTTGCCAGAATCACTCTTGGA  450

seq1  AACTGGGAGCTTTGAATTCCTTCTCTCAGATTAACATCAGAGCTGAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGAGCTTTGAATTCCTTCTCTCAGATTAACATCAGAGCTGAGAAC  500

seq1  CACCAGCTACCTCTGGAATGCTGGAAACAGCTTTCCAGTCATGGGTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTACCTCTGGAATGCTGGAAACAGCTTTCCAGTCATGGGTGTGG  550

seq1  CACCTGCTCAGATCCTAACCCTATTCCCATGGAGACTTTCTATCAGCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTCAGATCCTAACCCTATTCCCATGGAGACTTTCTATCAGCGAA  600

seq1  AGTGGCCAATGACACAGGGTATCGACACCCCAGTGGGGGTGGCTTCTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCAATGACACAGGGTATCGACACCCCAGTGGGGGTGGCTTCTACC  650

seq1  ATAATGAATGTGAAGTTGGTGAGGACACCAGGGAGGAGGGAAGGTGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAATGTGAAGTTGGTGAGGACACCAGGGAGGAGGGAAGGTGAGGA  700

seq1  GGGAAGAGATTTTCTACTGAGGAAAGATGTGAGCTACAAACCATGTCCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGATTTTCTACTGAGGAAAGATGTGAGCTACAAACCATGTCCCG  750

seq1  GAAATGGTCTCCCCATCCCCGCAGAGGATGTTGGGGAGCCTCAAGCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTCTCCCCATCCCCGCAGAGGATGTTGGGGAGCCTCAAGCCAGT  800

seq1  TCATAGACATCTTTACATCAGAGAGATACCCATGGCTTTTAAGCCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGACATCTTTACATCAGAGAGATACCCATGGCTTTTAAGCCAGGAA  850

seq1  AGAATTTTTTTTTCTTAGAGACGAAAATGACAAATGATTACATCATCACA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAATTTTTTTTTCTTAGAGACGAAAATGACAAATGA-TACATCATCACA  899

seq1  ACCTGAATACATGCAGTACTGACAAAACCTTGAAGACACTGGCTTGGTAA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCTGAATACATGCAGTACTGACAAAACCTTG-AGACACTGGCTTGGTAA  948

seq1  GATTCCTTGGAGTGTCCAATTTTAAGGCAGGCCCCTGGAGCTCATCTTGA  1000
      ||||| ||||||||||||  ||||||||| |||| |||||||||||||||
seq2  GATTCTTTGGAGTGTCCA--TTTAAGGCA-GCCCTTGGAGCTCATCTTGA  995

seq1  ATAAGTCAGGTCTACAGCCAATCACCAAGTCATACAGCACTCAGCCAAAG  1050
         |||||||||||||||||||| |  |||||||| | |||||| |||||
seq2  --TAGTCAGGTCTACAGCCAATC-CACAGTCATAC-GTACTCAG-CAAAG  1040

seq1  CACTTGAAATC  1061
      ||| |||||||
seq2  CAC-TGAAATC  1050

seq1: chr11_57919942_57920269
seq2: B6Ng01-103F04.g_728_980 (reverse)

seq1  TCTTTCTTCTTCTTCTTCTTTTTTTTTTGTTTTTTGTTTGTTTTTGAGAC  50
      |||||||||||||||||||| || || |  || || ||  | |||     
seq2  TCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTT-----  45

seq1  AGGGTTTCTCTGAATGGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCA  100
           ||||          ||   | | ||     ||  ||| |      
seq2  ----CTTCT---------TCTTCTTCTTCT-----TCTTTCTTT------  71

seq1  GGCTGGCCTTGAACTCAGAAATCTGCCCGCCTCTGCCTCCTGAGTGCTGG  150
             |||   ||      |||  |  | ||| | || |         
seq2  -------CTT---CT-----TTCTTTCTTCTTCTTCTTCTT---------  97

seq1  GATTAAAGGCGTGTGCCACCACCTCCCGGCTCGCTTGATGGCTCGCTCTT  200
                 | | |  |  | ||        |||          ||||
seq2  -----------TCTTCTTCTTCTTC--------CTT----------TCTT  118

seq1  TC-TTCCTTTCTTT-TTTTCTTTCTTCCTTCCTTTCTTTC-TTCCTTCTT  247
      || ||||||||||| ||| ||||||| ||| | ||||||| |||||||||
seq2  TCTTTCCTTTCTTTCTTTCCTTTCTTTCTTTCCTTCTTTCTTTCCTTCTT  168

seq1  TCTTT-CTTTCTTTCTTTCT---TTCTTTCTTTCTTTCTTTCTTTCTTTC  293
      ||||| ||||||||||||||   |||||||||||||||||||||||||||
seq2  TCTTTCCTTTCTTTCTTTCTTTCTTCTTTCTTTCTTTCTTTCTTTCTTTC  218

seq1  TTTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTT  328
      |||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTT  253