BAC Information

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BAC

Clone NameB6Ng01-103I01
Chromosome9 (Build37)
Map Location 38,044,418 - 38,045,441
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894
Downstream geneOlfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103I01.bB6Ng01-103I01.g
ACCDH912073DH912074
length1,030366
definitionDH912073|Mus musculus domesticus DNA, BAC clone: B6Ng01-103I01, 5' end.DH912074|Mus musculus domesticus DNA, BAC clone: B6Ng01-103I01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagagagctcttgggcaagtgctgaactcccaagcaacctgctgg
aagccaaagtggtttaggtaaactagcagctacaagttatagtctaacca
aaaattttgaaaaagaacaaatttgcaatattcatatttccaaatttcac
aatttacttcaaagctgtagtaatcacaataatgtgctttgaattaactg
tccaaaaataaaccttaaactcatggtttattaatttcaacagagaggtc
aagactatacaaataaggaaagaattacactacttcattaacaagtaatt
caggatgactgtgtatctatatataatagttctacctatttcataaataa
tcaaaaatactgaaaattggctaagttaaatgaaaggatatgtcatagaa
attttctctcaaatgtaacattcaactttggagggtggagagatggtttt
gggcatgtaaagacatcttacagatctaggaaatctaaaacttacaaatt
ctcaaggtcttcctgaatatcatggaagcagtaaataactgctggagggt
gaatagctgatttgcctgggggacattccccacctgtaaacatgcctgct
agttttgcagtcaactctggagatgcaatttttgaatagtgacctagcct
ctggcaggctttttgattatgcaggtgtttcctatccatccatcttccct
taactatactcctggacataagtccaataaacacatggttctttttttag
ttaggggtaccattgtcatgataaagcaccatgaccaaaatatgctttgg
gaggaaagtgtttattttactcatggttccatataatgcttcatcattaa
aagcagtgagagcaatgcaaggccagttacctggaggctggagattatgc
atagggcatggaggggtgctgcttactggcttgccctgcctcctttgtat
agaacccaggcaatcagtccaaagatagttccagctcaatggtctggact
cttcaaaacaatctttaatttaaggaaatg
tctattttgatttgtaacctgtttttaaattggattatttggtaatatct
agtttttctctctctccctccccctcctccctctctctctcacacacaca
cattttatacaatgtaatatgtataattatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatataaaa
tgtgtgtgtgtgagagagagagagaggggggggagggggagagagagaga
aaaaatgttaaataaacattaaatttatatacaggggacgtatatatata
gagtattgcgcgtgtttctttatggttttctctatgtgtgtgcctgcgcg
cgcgcgcccgcccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_38044418_38045441
seq2: B6Ng01-103I01.b_43_1065

seq1  GAATTCAGAGAGCTCTTGGGCAAGTGCTGAACTCCCAAGCAACCTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGCTCTTGGGCAAGTGCTGAACTCCCAAGCAACCTGCTGG  50

seq1  AAGCCAAAGTGGTTTAGGTAAACTAGCAGCTACAAGTTATAGTCTAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAAGTGGTTTAGGTAAACTAGCAGCTACAAGTTATAGTCTAACCA  100

seq1  AAAATTTTGAAAAAGAACAAATTTGCAATATTCATATTTCCAAATTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTGAAAAAGAACAAATTTGCAATATTCATATTTCCAAATTTCAC  150

seq1  AATTTACTTCAAAGCTGTAGTAATCACAATAATGTGCTTTGAATTAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACTTCAAAGCTGTAGTAATCACAATAATGTGCTTTGAATTAACTG  200

seq1  TCCAAAAATAAACCTTAAACTCATGGTTTATTAATTTCAACAGAGAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAATAAACCTTAAACTCATGGTTTATTAATTTCAACAGAGAGGTC  250

seq1  AAGACTATACAAATAAGGAAAGAATTACACTACTTCATTAACAAGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATACAAATAAGGAAAGAATTACACTACTTCATTAACAAGTAATT  300

seq1  CAGGATGACTGTGTATCTATATATAATAGTTCTACCTATTTCATAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGACTGTGTATCTATATATAATAGTTCTACCTATTTCATAAATAA  350

seq1  TCAAAAATACTGAAAATTGGCTAAGTTAAATGAAAGGATATGTCATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATACTGAAAATTGGCTAAGTTAAATGAAAGGATATGTCATAGAA  400

seq1  ATTTTCTCTCAAATGTAACATTCAACTTTGGAGGGTGGAGAGATGGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTCAAATGTAACATTCAACTTTGGAGGGTGGAGAGATGGTTTT  450

seq1  GGGCATGTAAAGACATCTTACAGATCTAGGAAATCTAAAACTTACAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTAAAGACATCTTACAGATCTAGGAAATCTAAAACTTACAAATT  500

seq1  CTCAAGGTCTTCCTGAATATCATGGAAGCAGTAAATAACTGCTGGAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGTCTTCCTGAATATCATGGAAGCAGTAAATAACTGCTGGAGGGT  550

seq1  GAATAGCTGATTTGCCTGGGGGACATTCCCCACCTGTAAACATGCCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCTGATTTGCCTGGGGGACATTCCCCACCTGTAAACATGCCTGCT  600

seq1  AGTTTTGCAGTCAACTCTGGAGATGCAATTTTTGAATAGTGACCTAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCAGTCAACTCTGGAGATGCAATTTTTGAATAGTGACCTAGCCT  650

seq1  CTGGCAGGCTTTTTGATTATGCAGGTGTTTCCTATCCATCCATCTTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGCTTTTTGATTATGCAGGTGTTTCCTATCCATCCATCTTCCCT  700

seq1  TAACTATACTCCTGGACATAAGTCCAATAAACACATGGTTCTTTTTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATACTCCTGGACATAAGTCCAATAAACACATGGTTCTTTTTTTAG  750

seq1  TTAGGGGTACCATTGTCATGATAAAGCACCATGACCAAAATATGCTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGTACCATTGTCATGATAAAGCACCATGACCAAAATATGCTTTGG  800

seq1  GAGGAAAGTGTTTATTTTACTCATGGTTCCATATAATGCTTCATCATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGTGTTTATTTTACTCATGGTTCCATATAATGCTTCATCATTAA  850

seq1  AAGCAGTGAGAGCAATGC-AGGCCAGTTACCTGGAGGCTGGAGATTATGC  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGCAGTGAGAGCAATGCAAGGCCAGTTACCTGGAGGCTGGAGATTATGC  900

seq1  ATAGGGCATGGAGGGGTGCTGCTTACTGGCTTGCCCTGCCTCCTTTGTAA  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATAGGGCATGGAGGGGTGCTGCTTACTGGCTTGCCCTGCCTCCTTTGT-A  949

seq1  TAGAACCCAGGGCAATCAGTCCAAAGATAGTCCCAGCTCAATGGTCTGGA  999
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  TAGAACCCA-GGCAATCAGTCCAAAGATAGTTCCAGCTCAATGGTCTGGA  998

seq1  CTCCTCCAAAACAATCTTT-ATTTAA  1024
      || || ||||||||||||| ||||||
seq2  CT-CTTCAAAACAATCTTTAATTTAA  1023