MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-103M12
Chromosome	9 (Build37)
Map Location	25,318,583 - 25,319,643
singlet/doublet	singlet
Overlap gene	2310005P05Rik
Upstream gene	Cypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327
Downstream gene	none
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cypt4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235067 MGI:1916573
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbx20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57246 MGI:1888496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC666251 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666251
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins pseudo : _no_value

name	LOC100040960 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040960
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins

name	Herpud2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80517 MGI:1915393
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666297 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666297
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 ESTs, 21 Proteins pseudo : _no_value

name	9130004C02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626123 MGI:2444340
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 28 ESTs

name	Sept7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235072 MGI:1335094
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666327 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666327 MGI:3648503
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	2310005P05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67484 MGI:1914734
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cypt4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115299746 GeneID:235067 MGI:1916573
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cysteine-rich perinuclear theca 4 transcript_id : NM_173412.2

name	Tbx20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34878725 GeneID:57246 MGI:1888496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 20 transcript_id : NM_194263.1

name	Tbx20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34878731 GeneID:57246 MGI:1888496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 20 transcript_id : NM_020496.2

name	LOC100040960 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259846 GeneID:100040960
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 2 Proteins product : similar to UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 transcript_id : XM_001475563.1

name	Herpud2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10181159 GeneID:80517 MGI:1915393
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HERPUD family member 2 transcript_id : NM_020586.1

name	9130004C02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259850 GeneID:626123 MGI:2444340
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 28 ESTs product : RIKEN cDNA 9130004C02 gene transcript_id : XM_001475643.1

name	Sept7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129873 GeneID:235072 MGI:1335094
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : septin 7 transcript_id : NM_009859.3

name	2310005P05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71043967 GeneID:67484 MGI:1914734
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310005P05 gene transcript_id : NM_026189.3

name	Cypt4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115299747 CCDS:CCDS22932.1 GeneID:235067 MGI:1916573
definition	codon_start : 1 note : basic protein CKT1R2; cysteine-rich perinuclear theca protein 4 product : cysteine-rich perinuclear theca 4 protein_id : NP_775588.2

name	Tbx20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34878726 CCDS:CCDS22933.1 GeneID:57246 MGI:1888496
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence TAS] GO_process : GO:0008015 - circulation [Evidence IMP]; GO:0009953 - dorsal/ventral pattern formation [Evidence IMP]; GO:0035050 - embryonic heart tube development [Evidence IGI] [Evidence IMP]; GO:0001947 - heart looping [Evidence IMP]; GO:0006936 - muscle contraction [Evidence IMP]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : T-box 20 isoform a protein_id : NP_919239.1

name	Tbx20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10048418 GeneID:57246 MGI:1888496
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence TAS] GO_process : GO:0008015 - circulation [Evidence IMP]; GO:0009953 - dorsal/ventral pattern formation [Evidence IMP]; GO:0035050 - embryonic heart tube development [Evidence IGI] [Evidence IMP]; GO:0001947 - heart looping [Evidence IMP]; GO:0006936 - muscle contraction [Evidence IMP]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : T-box 20 isoform b protein_id : NP_065242.1

name	LOC100040960 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259847 GeneID:100040960
definition	codon_start : 1 product : similar to UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 protein_id : XP_001475613.1

name	Herpud2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10181160 CCDS:CCDS22934.1 GeneID:80517 MGI:1915393
definition	GO_process : GO:0006464 - protein modification [Evidence IEA] codon_start : 1 product : HERPUD family member 2 protein_id : NP_065611.1

name	9130004C02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259851 GeneID:626123 MGI:2444340
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475693.1

name	Sept7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28173550 GeneID:235072 MGI:1335094
definition	GO_component : GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA] codon_start : 1 product : cell division cycle 10 homolog protein_id : NP_033989.2

name	2310005P05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71043968 CCDS:CCDS22935.1 GeneID:67484 MGI:1914734
definition	GO_function : GO:0043565 - sequence-specific DNA binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC67484 protein_id : NP_080465.3

name	EG666327 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666327
definition	number : 1 pseudo : _no_value

name	EG666327 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666327
definition	number : 2 pseudo : _no_value

name	EG666327 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666327
definition	number : 3 pseudo : _no_value

name	LOC666251 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259884 GeneID:666251
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : similar to S-adenosylmethionine decarboxylase pseudo : _no_value transcript_id : XR_033206.1

name	LOC666297 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259849 GeneID:666297
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 29 ESTs, 21 Proteins product : similar to Ac2-008 pseudo : _no_value transcript_id : XR_032335.1

clone name	MSMg01-517M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331F24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-104I01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-068E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336I05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-129N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072O01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-261H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340D06
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-103M12.b	B6Ng01-103M12.g
ACC	DH912266	DH912267
length	1,233	1,059
definition	DH912266\|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M12, 5' end.	DH912267\|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M12, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctttcattgtgaatgttttatatatgttcataggggatattgtct ataatttttggttggatatttgtatatattttggtatcaggattatagtg ttctcataaaaaagtagacagtgttctttcatttttctatttagcagtgt aatttgaagcatattagtgtttgttcttctttgaaggcatgggagaattc tgcgcttaatgaacctaaccctgatatgtttcttggtggtggtattatga aaatattttaatcactaattctgttccactagaactttggtgtttgttta gattgtttttttttttcatctttatttagctttagcgggctatatttacc gtgagatccatccatttcttttagaatttacagttttgtgatatataaat ttttaaagcatatcctcatgattccctaagttttcttggcgtctgttgta atggcttccttatcatctataattttattaatttagatcttctcttaatg tgtgtcttttgattagtttggttaaaggtttgtcagtctcattgatttcg ccaaagaaccaacttttcatctcactgattctctttattattagtttttt aattctattttattgattttagcactgtttatgttttactacataatctt ttaaaatattacctcttgttggtttgtaatgctttcaagtgtgtcattaa gttttattgtacctttacagtctcttatcttggaacttagtgttatgatc ttgctttttagaactgcctttgttgcatctctgcaatttgagtattctat gctaacactttaatttagttctaaaatgttttaatttctttactcaattt tcattcagagtgaattgtttatcttgtacactttctgccatttccatttg ttgatatctaactttaatccatgatggtcagacagaatgcagggtgttat ttcattttctgtatttgttgagactttcttttgtatcacatatgtgggtc aatattggaggtattcttggtaactgttgagtgacatgttcttggataat ctattaggtctatttgatggtatgaaaatatttaattcaggcatcccctt ctttggttttgtatggatggacagctcatgggcaagatagtagtgttgag taaatccagtgtggggagagacaagatgtgatttaaggagaagggttttt tttaagaaactctgaatctctctttgtgtagtg	gaattcttcacagttctgtgtgtatactgggaagaatggtgactaggagt gttcagtaacttgaccagtgcagccttacctgcccttactcaggtggaag ataaacaaattgatctcatagaagtagaagctattatgatagccagtcaa ggctgcaaagagatggggacttagtatatacagcagtggctctcaaccag tggatggtgacccctttgggggtcaaatgaccctttcaaaggggttgcct aagaccatcagaaaacagcagcaaaattacagttatacgtagcaaggaaa acaattttatggttgggggtcaccacaacatgaggaactgtattaaaggg tctcagtgttaggaaggttgagaaccactagtctggagggaagcttatag aatgcactttaggatgggtgtaccttacagaaatttgtatgttatgaaga gttagtatagaggacttcaaagcttctggacagaaggaaatgcttaagag tttgagagggaggtactaactactttaaatgggtcaacaaacataccatc aaacattgtatcaagctttcatattgtatctaaaatctctgcattgtata taagttattatccccatagaaggagtggagatgtatcacagtggctatag cctcacatgctcaaaaccctggcttcaagcttcagcactgtgatctgtag atcaacactagctatggattacagatgtcagagtttatgccgtaacccaa cttctcttatattttaaagtgcgattgcagtttacaaggaagagaaatgg cactcgcaagaccacggcacaaaattctgtctgcatgggatgaggtctag gacaaattgtaaaaatgtagaagcgttctgctgtcctccttgtccccagt cggagtggacctgctgtaccccggccccggcccagtggatcggttggctg cttgtccttgtgaagaagaataatgccagttgtctctcaccaagatggga agactgaacagagtaattctttctttcacgggcttttgcatgaaggcgag aatgggagg
quality values	Open. Hide. 61 47 35 36 61 61 61 61 61 38 19 61 61 49 49 49 61 55 40 59 59 61 61 61 61 19 18 15 12 13 26 21 28 24 27 49 36 59 61 61 59 59 49 61 59 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 43 35 30 28 28 30 49 59 59 59 61 61 61 55 55 61 61 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 59 61 61 59 44 55 59 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 59 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 59 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 52 59 59 59 61 59 59 61 61 61 59 59 61 61 61 61 59 59 61 59 61 61 59 61 59 59 59 61 61 61 61 61 59 59 59 61 61 59 61 59 59 61 59 61 61 61 61 61 61 59 61 59 59 61 59 59 52 61 61 61 59 59 59 59 52 59 61 61 61 59 59 59 59 59 59 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 59 59 59 61 61 61 59 61 61 59 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 55 61 61 61 55 55 61 61 61 61 61 61 61 61 61 52 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 43 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 61 61 53 61 47 43 61 61 50 61 61 52 61 43 61 61 61 61 61 61 61 42 61 61 61 61 50 61 61 61 53 50 50 50 50 53 61 61 53 53 45 53 61 53 47 61 53 61 61 61 61 61 43 47 61 39 61 61 61 61 61 61 61 47 61 53 61 61 48 42 41 61 61 61 53 57 52 57 53 57 57 57 52 53 53 53 53 57 53 52 53 53 47 53 57 45 53 57 53 53 53 40 57 57 43 53 47 47 57 50 53 53 52 53 46 47 45 53 53 52 53 47 47 53 42 42 57 57 47 38 37 47 34 37 26 50 52 53 41 24 53 42 50 52 34 52 38 45 35 43 53 53 57 50 53 53 53 52 50 40 41 36 22 28 47 52 52 57 41 30 47 14 50 24 47 40 52 52 32 45 38 53 45 52 33 27 30 19 32 31 50 53 42 41 52 21 24 32 42 40 38 38 40 30 57 52 40 29 57 57 57 27 50 24 52 38 24 38 42 29 53 34 53 53 42 23 50 34 37 29 42 42 35 40 42 40 40 18 52 34 57 31 37 48 37 42 35 37 20 39 36 31 24 53 32 20 18 29 36 10 29 33 35 35 41 41 24 57 33 36 30 53 21 29 28 35 40 39 38 19 12 4 39 41 9 12 44 26 32 15 15 21 36 29 29 37 27 30 21 29 37 45 45 30 31 19 21 11 12 8 7 9 7 19 32 47 47 23 46 48 31 51 29 32 30 32 18 51 48 16 23 29 18 29 24 51 17 29 19 29 20 38 23 28 51 31 18 33 26 29 46 33 29 26 22 27 34 11 20 21 43 25 39 27 29 14 46 22 41 28 28 34 35 23 28 38 31 23 39 41 20 33 34 8 41 10 26 23 29 28 20 29 22 16 27 51 33 14 38 33 20 11 7 46 29 26 34 14 51 51 28 20 10 23 12 18 29 51 29 15 10 38 25 29 12 33 27 28 51 23 12 6 41 51 9 29 8 21 36 27 19 28 23 10 6 16 15 12 10 41 24 20 28 17 22 12 27 41 14 21 7 20 5 32 8 16 17 29 25 8 34 13 26 10 18 5 11 12 19 12 24 19 29 21 23 29 22 12 9 15 35 13 23 24 18 20 7 6 5 9 8 8 6 22 15 14 10 10 23 9 6 7 12 9 6 7 32 14 4 6 6 6 6 4 4 5 20 24 35 5 4 9 10 18 34 19 30 22 18 9 17 4 4 4 6 5 6 5 28 8 5 4 4 5 5 30 22 7 11 4 20 31 17 6 6 20 10 33 13 29 7 5 8 10 8 7 9 20 6 5 7 20 11 29 16 16 23 6 6 4 9 4 4 3 3 4 6 13 5 12 9 26 5 4 13 31 19 9 8 6 7 6 3 6 6 16 35 26 19 4 6 4 6 8 5 8 7 3 3 4 10 10 7 10 7 16 14 14 12 6 10 5 5 4 3 7 15 12 12 21 24 16 24 24 27 13 9 11 6 17 6 14 7 16 4 4 6 6 5 18 9 7 20 4 7 11 16 8 14 1 2 2 2 3 2 3	Open. Hide. 61 61 55 49 61 24 26 28 36 11 18 7 12 18 20 59 59 59 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 61 59 59 61 61 61 61 61 59 59 59 35 36 35 25 28 52 52 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 59 61 61 59 59 55 59 61 61 61 61 61 61 59 59 44 55 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 59 59 55 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 55 61 61 61 61 61 55 61 61 61 61 61 43 61 61 55 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 55 61 61 53 61 61 61 61 61 61 61 61 61 53 61 50 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 61 61 61 47 61 47 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 39 61 53 61 61 61 53 53 46 53 52 53 53 53 61 53 53 53 61 61 61 61 61 61 61 61 61 53 61 61 61 50 61 50 53 46 46 61 61 47 61 61 53 53 57 57 57 57 53 57 53 53 46 46 57 57 57 57 45 50 53 53 42 53 57 53 53 53 53 47 43 57 47 57 53 53 53 52 53 47 53 33 53 57 57 38 53 53 53 52 21 57 53 53 52 50 39 39 53 57 53 53 47 53 37 57 53 53 57 39 23 47 53 34 45 57 47 47 31 36 32 57 50 45 40 45 45 45 53 52 50 52 43 52 52 50 53 52 50 53 43 53 38 45 52 45 47 53 50 53 52 42 50 50 50 48 32 38 46 53 53 42 57 35 27 24 36 47 52 52 53 30 39 32 53 42 47 53 53 45 50 41 50 37 53 53 27 53 37 37 42 40 37 34 46 37 50 53 38 33 47 53 33 31 46 39 40 38 39 33 50 37 38 47 40 53 37 35 37 25 57 29 41 57 43 33 47 35 36 53 33 37 39 24 24 33 20 27 36 31 33 40 35 37 40 47 33 30 36 33 37 57 57 47 33 57 53 31 33 40 35 33 38 20 57 53 45 30 36 39 57 37 27 34 21 32 27 37 27 29 21 46 21 21 51 19 32 32 45 30 25 30 40 27 27 25 18 30 29 26 12 20 17 29 10 45 27 23 31 30 47 48 34 33 36 29 29 29 28 29 32 35 27 14 29 34 47 10 19 15 28 36 29 30 22 34 34 31 33 11 22 28 29 46 28 29 24 29 28 29 51 51 51 21 14 23 13 27 17 41 39 22 30 30 29 26 17 13 20 17 29 29 28 33 29 29 21 29 29 29 29 15 18 36 41 30 19 19 28 20 8 16 23 7 28 26 22 25 8 26 28 29 22 29 21 7 8 29 26 24 17 10 21 14 41 29 24 7 19 28 28 21 7 12 6 19 33 23 25 12 17 15 36 15 20 25 10 21 30 23 23 20 30 23 38 34 9 29 19 12 13 36 30 9 32 32 9 38 38 33 28 29 18 32 25 30 16 18 17 21 16 19 19 11 8 17 20 15 22 35 6 5 6 15 9 20 35 19 23 8 12 14 7 18 20 13 5 5 8 10 10 5 17 9 5 28 9 20 5 18 15 16 23 42 10 29 9 11 10 34 19 21 18 37 37 29 10 11 29 18 27 5 12 22 23 13 5 4 7 5 5 4 14 29 11 15 7 29

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_25318583_25319643
seq2: B6Ng01-103M12.g_67_1125

seq1  GAATTCTTCACAGTTCTGTGTGTATACTGGGAAGAATGGTGACTAGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACAGTTCTGTGTGTATACTGGGAAGAATGGTGACTAGGAGT  50

seq1  GTTCAGTAACTTGACCAGTGCAGCCTTACCTGCCCTTACTCAGGTGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTAACTTGACCAGTGCAGCCTTACCTGCCCTTACTCAGGTGGAAG  100

seq1  ATAAACAAATTGATCTCATAGAAGTAGAAGCTATTATGATAGCCAGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAATTGATCTCATAGAAGTAGAAGCTATTATGATAGCCAGTCAA  150

seq1  GGCTGCAAAGAGATGGGGACTTAGTATATACAGCAGTGGCTCTCAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAAAGAGATGGGGACTTAGTATATACAGCAGTGGCTCTCAACCAG  200

seq1  TGGATGGTGACCCCTTTGGGGGTCAAATGACCCTTTCAAAGGGGTTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTGACCCCTTTGGGGGTCAAATGACCCTTTCAAAGGGGTTGCCT  250

seq1  AAGACCATCAGAAAACAGCAGCAAAATTACAGTTATACGTAGCAAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATCAGAAAACAGCAGCAAAATTACAGTTATACGTAGCAAGGAAA  300

seq1  ACAATTTTATGGTTGGGGGTCACCACAACATGAGGAACTGTATTAAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTATGGTTGGGGGTCACCACAACATGAGGAACTGTATTAAAGGG  350

seq1  TCTCAGTGTTAGGAAGGTTGAGAACCACTAGTCTGGAGGGAAGCTTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTTAGGAAGGTTGAGAACCACTAGTCTGGAGGGAAGCTTATAG  400

seq1  AATGCACTTTAGGATGGGTGTACCTTACAGAAATTTGTATGTTATGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTTTAGGATGGGTGTACCTTACAGAAATTTGTATGTTATGAAGA  450

seq1  GTTAGTATAGAGGACTTCAAAGCTTCTGGACAGAAGGAAATGCTTAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTATAGAGGACTTCAAAGCTTCTGGACAGAAGGAAATGCTTAAGAG  500

seq1  TTTGAGAGGGAGGTACTAACTACTTTAAATGGGTCAACAAACATACCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGGGAGGTACTAACTACTTTAAATGGGTCAACAAACATACCATC  550

seq1  AAACATTGTATCAAGCTTTCATATTGTATCTAAAATCTCTGCATTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGTATCAAGCTTTCATATTGTATCTAAAATCTCTGCATTGTATA  600

seq1  TAAGTTATTATCCCCATAGAAGGAGTGGAGATGTATCACAGTGGCTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATTATCCCCATAGAAGGAGTGGAGATGTATCACAGTGGCTATAG  650

seq1  CCTCACATGCTCAAAACCCTGGCTTCAAGCTTCAGCACTGTGATCTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATGCTCAAAACCCTGGCTTCAAGCTTCAGCACTGTGATCTGTAG  700

seq1  ATCAACACTAGCTATGGATTACAGATGTCAGAGTTTATGCCGTAACCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACACTAGCTATGGATTACAGATGTCAGAGTTTATGCCGTAACCCAA  750

seq1  CTTCTCTTATATTTTAAAGTGCGATTGCAGTTTACAAGGAAGAGAAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTATATTTTAAAGTGCGATTGCAGTTTACAAGGAAGAGAAATGG  800

seq1  CACTCGCAAGACCACGGCACAAAATTCTGTCTGCAT-GGATGAGGTCTAG  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACTCGCAAGACCACGGCACAAAATTCTGTCTGCATGGGATGAGGTCTAG  850

seq1  GACAAATTGTAAAAATGTAGAAGCGTTCTGCTGTCCTCCTTGTCCCCAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTGTAAAAATGTAGAAGCGTTCTGCTGTCCTCCTTGTCCCCAGT  900

seq1  CGGAGTGGACCTGCTGTACCCCCGGCCCCGGCCCAGGTGGATCGGTTGGG  949
      |||||||||||||||||| |||||||||||||||| ||||||||||| ||
seq2  CGGAGTGGACCTGCTGTA-CCCCGGCCCCGGCCCA-GTGGATCGGTT-GG  947

seq1  CTGCTTGTCCCTTGTGAAGAAGAATAATGCCCAGTTGTCTCTCACCCAGA  999
      |||||||| |||||||||||||||||||| |||||||||||||||| |||
seq2  CTGCTTGT-CCTTGTGAAGAAGAATAATG-CCAGTTGTCTCTCACCAAGA  995

seq1  TGGGAAGACTG-ACAGAGT-ATTCCTTCTTTCCACGGGCTTTTGCATGGA  1047
      ||||||||||| ||||||| |||| |||||| |||||||||||||||| |
seq2  TGGGAAGACTGAACAGAGTAATTCTTTCTTT-CACGGGCTTTTGCATGAA  1044

seq1  GGCGAG-ATGGGAGG  1061
      |||||| ||||||||
seq2  GGCGAGAATGGGAGG  1059

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information