BAC Information

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BAC

Clone NameB6Ng01-103M21
Chromosome9 (Build37)
Map Location 37,716,937 - 37,876,475
singlet/doubletdoublet
Overlap geneEG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885
Upstream genePknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145
Downstream geneOlfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103M21.bB6Ng01-103M21.g
ACCDH912282DH912283
length1,198889
definitionDH912282|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M21, 5' end.DH912283|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,875,280 - 37,876,475)(37,716,937 - 37,717,820)
sequence
gaattctaagtaaatacttcagcttatctttctttgggttgatgcgaaaa
tcactaccttgaatatcatagaggtgaacaatataatatgtattacctca
ctctgctttctggaaatatactgatttacaggttgtagtgatagtggttg
cctgagtagcttttcattgatttttgccaaaagcatagactcttcaattg
ggtctcccgattgttagtgggtaacaaaacaggatttaattttgacatct
tggccttgtattataggtatgccctctgctaccttgcttttgcgtcagaa
ttgtgttttcagatagacaggctagacaatcagatatcagtaggagtttc
atacatgccaaaacttgctcatctctctagtcccttcccatggctaaata
tgcaatgtgtaactaacataactccaaattttacagaggtatcataatcc
acagattaacaactaccagaaggagcttaaattatccctgaattaacata
ctcatttctggacactagacaccatcttgcttcactgcatatattttttc
attccaataacttatcacttatgcactgggcttctttcacaatagccaat
gtatatggactttgatccagtgaataatgatgacttatcagaaaaagata
ttagtcatcactaagcgtaaacttggtatgtgtatattttgactattaaa
atgatataactcggtgtgtaccttccctgccagagaagtgcttgcttcca
aagagtcatctgacccctggattcaggtgctattgccatttttcctctgg
tgactctttaaggtgaaaaatggaagtagaaacaataaagaaatgacaaa
gggagagacaattctggagatagaaatcttaggaaagaaattgggagtca
tagatgcaagcatcaccacagaatacaaaagagagaggagagaatatcag
gtgcagaaagataccatagaaaacaaggacataacattaaagaattactc
aggagaggccagggactcagagatctgagttctaggacagggtctacagt
ctaaatctccacccaggaggtggggctgaatcctcaccctcctctgtttc
acctttccccaacagaaggacaggcttgcttcaggaatggtcttgaaaca
ggactcagttgaaatcacattttctctctgggtgacctctataaggtg
gaattcatatgtataactgcccttctgagttcaggtatcaaccattacct
ctagctcttagtcaaactatactagaatgtaaagtcttcatggttatttt
cccagtgctgagagggagggagagagagagagagagagagagagagagag
agagagagagagagaataccctttgggatgtgtgtgaaaagcaatagata
tcaggaaaaataccctcaaggaagtgactcaaggagtaaacagtatgggt
ctgaattatttggctcacccatattttgctcatatccagaaagtctttac
ttattctgcatttgaatgatgtttttgaggtttgtttttagtgcaagcta
agtatttagctttcaacatcagaatttgattacgactagcatatatatat
atgctcattgccaagaaatggggtaggttacagattcttagaactgggta
gtgaaccagctgttggcatcagggatgacaagaaagccaggtggtggaaa
tgaaggcatgtcacacagacttgtctggttaggctgcactggttgttcat
gctggcacagccagcatcctgactatgttattaatggagacatttgtttt
ttttcatttttgccaaaatatagtgtaaacagttcctacttgtagtttct
aagagttgtaagatggatttggagtctggatccaacgaatgcacacatgg
aagaaattctgaggttggggtaatcacaaaaaacaatttcatttccactt
aattttcagttttgcaactcaatttcagtttcttagagaggtcttttcag
actttcaaggcttactagtgtttcacttatacagttttatacagaaaatt
catataccttccctgtgcactaattgttttccaaatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37875280_37876475
seq2: B6Ng01-103M21.b_46_1243 (reverse)

seq1  CACCTTA-AGA-GTCA-CCAGAGAGAAAATTGTGATCTCACCTGAGTCCT  47
      ||||||| ||| |||| |||||||||||| |||||| ||| |||||||||
seq2  CACCTTATAGAGGTCACCCAGAGAGAAAA-TGTGATTTCAACTGAGTCCT  49

seq1  GGTGTCAGACATTTCCTGGAGGCAAG-CTGT-CTTCTGGTGGGG-AAGGT  94
      | |   ||||  ||||| || ||||| |||| |||||| ||||| |||||
seq2  GTTTCAAGACCATTCCT-GAAGCAAGCCTGTCCTTCTGTTGGGGAAAGGT  98

seq1  G-AACAGAG--AGGTGA-GATTCAGCCCCACCTCCTGGGTGGAGATGTAG  140
      | |||||||   ||||| |||||||||||||||||||||||||||| || 
seq2  GAAACAGAGGAGGGTGAGGATTCAGCCCCACCTCCTGGGTGGAGATTTA-  147

seq1  GACTGTAAGACCCTGTCTTAGAAACTCAGATTCTTCTGAGT-CCTGGCCT  189
      |||||| |||||||||| ||| |||||||||   ||||||| ||||||||
seq2  GACTGT-AGACCCTGTCCTAG-AACTCAGAT--CTCTGAGTCCCTGGCCT  193

seq1  CTCCTGAGTAATTCTTTAATTGTTATGTCCTTGTTTTCTATGGTATCTTT  239
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCCTGAGTAATTCTTTAA-TGTTATGTCCTTGTTTTCTATGGTATCTTT  242

seq1  CTGCACCTGATATTCTCTCTTCTCTCTTTTGTATTCTGTTGGTGATGCTT  289
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  CTGCACCTGATATTCTCTCCTCTCTCTTTTGTATTCTG-TGGTGATGCTT  291

seq1  GCATCTATGACTCCCAATTTCTTTCCTAAGATTTCTATCTCCAGAATTGT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTATGACTCCCAATTTCTTTCCTAAGATTTCTATCTCCAGAATTGT  341

seq1  CTCTCCCTTTGTCATTTCTTTATTGTTTCTACTTCCATTTTTCACCTTAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTTGTCATTTCTTTATTGTTTCTACTTCCATTTTTCACCTTAA  391

seq1  AGAGTCACCAGAGGAAAAATGGCAATAGCACCTGAATCCAGGGGTCAGAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACCAGAGGAAAAATGGCAATAGCACCTGAATCCAGGGGTCAGAT  441

seq1  GACTCTTTGGAAGCAAGCACTTCTCTGGCAGGGAAGGTACACACCGAGTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTTGGAAGCAAGCACTTCTCTGGCAGGGAAGGTACACACCGAGTT  491

seq1  ATATCATTTTAATAGTCAAAATATACACATACCAAGTTTACGCTTAGTGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTTTAATAGTCAAAATATACACATACCAAGTTTACGCTTAGTGA  541

seq1  TGACTAATATCTTTTTCTGATAAGTCATCATTATTCACTGGATCAAAGTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATATCTTTTTCTGATAAGTCATCATTATTCACTGGATCAAAGTC  591

seq1  CATATACATTGGCTATTGTGAAAGAAGCCCAGTGCATAAGTGATAAGTTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATTGGCTATTGTGAAAGAAGCCCAGTGCATAAGTGATAAGTTA  641

seq1  TTGGAATGAAAAAATATATGCAGTGAAGCAAGATGGTGTCTAGTGTCCAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGAAAAAATATATGCAGTGAAGCAAGATGGTGTCTAGTGTCCAG  691

seq1  AAATGAGTATGTTAATTCAGGGATAATTTAAGCTCCTTCTGGTAGTTGTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTATGTTAATTCAGGGATAATTTAAGCTCCTTCTGGTAGTTGTT  741

seq1  AATCTGTGGATTATGATACCTCTGTAAAATTTGGAGTTATGTTAGTTACA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGGATTATGATACCTCTGTAAAATTTGGAGTTATGTTAGTTACA  791

seq1  CATTGCATATTTAGCCATGGGAAGGGACTAGAGAGATGAGCAAGTTTTGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATATTTAGCCATGGGAAGGGACTAGAGAGATGAGCAAGTTTTGG  841

seq1  CATGTATGAAACTCCTACTGATATCTGATTGTCTAGCCTGTCTATCTGAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGAAACTCCTACTGATATCTGATTGTCTAGCCTGTCTATCTGAA  891

seq1  AACACAATTCTGACGCAAAAGCAAGGTAGCAGAGGGCATACCTATAATAC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATTCTGACGCAAAAGCAAGGTAGCAGAGGGCATACCTATAATAC  941

seq1  AAGGCCAAGATGTCAAAATTAAATCCTGTTTTGTTACCCACTAACAATCG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAAGATGTCAAAATTAAATCCTGTTTTGTTACCCACTAACAATCG  991

seq1  GGAGACCCAATTGAAGAGTCTATGCTTTTGGCAAAAATCAATGAAAAGCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCAATTGAAGAGTCTATGCTTTTGGCAAAAATCAATGAAAAGCT  1041

seq1  ACTCAGGCAACCACTATCACTACAACCTGTAAATCAGTATATTTCCAGAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGCAACCACTATCACTACAACCTGTAAATCAGTATATTTCCAGAA  1091

seq1  AGCAGAGTGAGGTAATACATATTATATTGTTCACCTCTATGATATTCAAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTGAGGTAATACATATTATATTGTTCACCTCTATGATATTCAAG  1141

seq1  GTAGTGATTTTCGCATCAACCCAAAGAAAGATAAGCTGAAGTATTTACTT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATTTTCGCATCAACCCAAAGAAAGATAAGCTGAAGTATTTACTT  1191

seq1  AGAATTC  1196
      |||||||
seq2  AGAATTC  1198

seq1: chr9_37716937_37717820
seq2: B6Ng01-103M21.g_69_957

seq1  GAATTCATATGTATAACTGCCCTTCTGAGTTCAGGTATCAACCATTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTATAACTGCCCTTCTGAGTTCAGGTATCAACCATTACCT  50

seq1  CTAGCTCTTAGTCAAACTATACTAGAATGTAAAGTCTTCATGGTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCTTAGTCAAACTATACTAGAATGTAAAGTCTTCATGGTTATTTT  100

seq1  CCCAGTGCTGAGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCTGAGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  150

seq1  AGAGAGAGAGAGAGAATACCCTTTGGGATGTGTGTGAAAAGCAATAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAATACCCTTTGGGATGTGTGTGAAAAGCAATAGATA  200

seq1  TCAGGAAAAATACCCTCAAGGAAGTGACTCAAGGAGTAAACAGTATGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAAATACCCTCAAGGAAGTGACTCAAGGAGTAAACAGTATGGGT  250

seq1  CTGAATTATTTGGCTCACCCATATTTTGCTCATATCCAGAAAGTCTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTATTTGGCTCACCCATATTTTGCTCATATCCAGAAAGTCTTTAC  300

seq1  TTATTCTGCATTTGAATGATGTTTTTGAGGTTTGTTTTTAGTGCAAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGCATTTGAATGATGTTTTTGAGGTTTGTTTTTAGTGCAAGCTA  350

seq1  AGTATTTAGCTTTCAACATCAGAATTTGATTACGACTAGCATATATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAGCTTTCAACATCAGAATTTGATTACGACTAGCATATATATAT  400

seq1  ATGCTCATTGCCAAGAAATGGGGTAGGTTACAGATTCTTAGAACTGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATTGCCAAGAAATGGGGTAGGTTACAGATTCTTAGAACTGGGTA  450

seq1  GTGAACCAGCTGTTGGCATCAGGGATGACAAGAAAGCCAGGTGGTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCAGCTGTTGGCATCAGGGATGACAAGAAAGCCAGGTGGTGGAAA  500

seq1  TGAAGGCATGTCACACAGACTTGTCTGGTTAGGCTGCACTGGTTGTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCATGTCACACAGACTTGTCTGGTTAGGCTGCACTGGTTGTTCAT  550

seq1  GCTGGCACAGCCAGCATCCTGACTATGTTATTAATGGAGACATTTG--TT  598
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  GCTGGCACAGCCAGCATCCTGACTATGTTATTAATGGAGACATTTGTTTT  600

seq1  TTTTCATTTTTGCCAAAATATAGTGTAAACAGTTCCTACTTGTAGTTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTTTGCCAAAATATAGTGTAAACAGTTCCTACTTGTAGTTTCT  650

seq1  AAGAGTTGTAAGATGGATTTGGAGTCTGGATCCAACGAAGGCACACATGG  698
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGAGTTGTAAGATGGATTTGGAGTCTGGATCCAACGAATGCACACATGG  700

seq1  AAGAAATTCTGAGGTT-GGGTAATCACAAAAAACAATTTCATTTCCACTT  747
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGAAATTCTGAGGTTGGGGTAATCACAAAAAACAATTTCATTTCCACTT  750

seq1  AATTTTCAGTTTTGCAACTCAATTTCAGTTTCTTAGAGAGGTCTTTTCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAGTTTTGCAACTCAATTTCAGTTTCTTAGAGAGGTCTTTTCAG  800

seq1  ACTTTCAAGGCTTACTAGTGTTTCACTTATACAGTTTTATACAG-AAATT  846
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTTTCAAGGCTTACTAGTGTTTCACTTATACAGTTTTATACAGAAAATT  850

seq1  CATATACCTTCCCTGTGCACTAATTGTTTT-CTAATCAG  884
      |||||||||||||||||||||||||||||| | ||||||
seq2  CATATACCTTCCCTGTGCACTAATTGTTTTCCAAATCAG  889