BAC Information

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BAC

Clone NameB6Ng01-104A15
Chromosome9 (Build37)
Map Location 104,185,314 - 104,329,565
singlet/doubletdoublet
Overlap geneAcpp, LOC100040921
Upstream gene1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik, EG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16
Downstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104A15.bB6Ng01-104A15.g
ACCDH912451DH912452
length717963
definitionDH912451|Mus musculus domesticus DNA, BAC clone: B6Ng01-104A15, 5' end.DH912452|Mus musculus domesticus DNA, BAC clone: B6Ng01-104A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,185,314 - 104,186,027)(104,328,597 - 104,329,565)
sequence
gaattcagtcccgatgtctccgtgggcttgtgctttgtaatcaggagtgt
gtgatccactgtagaaagtcaaagtcgacattagccaggtgtggtacggc
acagctttaatcagagcattcagaaaggcagggacaggtcaatttctgtg
agttcaaggacagccagctctatctactgagctctgggctagctaggact
acaaagtgagactctgcctcaaaaaaaaaaaaaaaaaaaaaaaaaaaagg
aaaggaaagaagctaacatgaaggttactgagggacgccccccccccccc
accaccacacacacacacacacacacacacacacacacactcacttagtt
ctttcatgcccaaacactgccttccctcggggaaagcttgtggtctcttg
tctctccatctttctttgtgtcaccttctgcccttcccactttacatttt
ccttatttggttcaaaacttgttttttgtttgttgttgttgttgttttga
gacagagagtttctctgtgtagccctggctgtcctggaactcactctgtg
aactagtctggcctcgaactcagagatctgcctgcctctgcctcctgagt
gctgggattgaagatgtgggccaccactgcccagctggttcaaaactctc
aatcactttgatttttctcaacctttttttgtttggttctatttttttgg
tttattttttttgtttt
gaattctcccttctgccagcgttctacattcctcacacacacacacacac
acacacacacacaaatggttccttcaggtagcaagcaattaccgaaagct
tctcaaatatgaggggccgtgaggtatatccaaggcaatcaggaccaaga
agcctgctctccaggcccaagaccaaacagtggggcagtagtgactgtgc
atcctccagctcgctcagtgggtgggtgcctgagcaggcgtggccctgtg
ggtgggtgcctgagcaggcgtggccctgtgggaagaagagctgattttct
gtataaactataaagtgacttagatccctttttttttttttgcctctgcc
tgctcatggaagaaaaagggcaaatggacagattgtttgcagaaagtggc
ctcagttattccccccacatatccatacctgtttgcaatatgattctgca
gtccttcccattaacatctgttttccaacttcctgtgtctgacctggttc
catgctttgcttggccaggggaatgttagtgcagtaacatgatgagaccc
gtgcccagcctgtacttgaaaggaccttgaaatttttttttccttggaac
catgccctgctaacatgcaaaatgagaagcccatgctagcctgcaaatca
acaaaactatactgtttttagatgtggatctgagtccagagagggtggct
gctgagagtgtttctatctggaccaactaactgaaacagggacttgtgtt
tgataaaataaaggcagttagtgaaagaacaaatgattctcttgaagatg
aaaagcaacaagaaagtctggccagtcctgagacatgcaagtggctagcc
agtaacttctctgggaaagctcagagagcacttctgctctttttgtacgt
gcagcccttgcccagagggtttccagacccctatcattggctgcttcatg
atatcttgatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_104185314_104186027
seq2: B6Ng01-104A15.b_48_764

seq1  GAATTCAGTCCCGATGTCTCCGTGGGCTTGTGCTTTGTAATCAGGAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCGATGTCTCCGTGGGCTTGTGCTTTGTAATCAGGAGTGT  50

seq1  GTGATCCACTGTAGAAAGTCAAAGTCGACATTAGCCAGGTGTGGTACGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCACTGTAGAAAGTCAAAGTCGACATTAGCCAGGTGTGGTACGGC  100

seq1  ACAGCTTTAATCAGAGCATTCAGAAAGGCAGGGACAGGTCAATTTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTAATCAGAGCATTCAGAAAGGCAGGGACAGGTCAATTTCTGTG  150

seq1  AGTTCAAGGACAGCCAGCTCTATCTACTGAGCTCTGGGCTAGCTAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGACAGCCAGCTCTATCTACTGAGCTCTGGGCTAGCTAGGACT  200

seq1  ACAAAGTGAGACTCTGCCTC-AAAAAAAAAAAAAAAAAAAAAAAAAAAGG  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAAAGTGAGACTCTGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG  250

seq1  AAAGGAAAGAAGCTAACATGAAGGTTACTGAGGGACGCCCCCCCCCCCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGAAGCTAACATGAAGGTTACTGAGGGACGCCCCCCCCCCCCC  300

seq1  ACCACCACACACACACACACACACACACACACACACACACTCACTTAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACACACACACACACACACACACACACACACACACTCACTTAGTT  350

seq1  CTTTCATGCCCAAACACTGCCTTCCCTCGTGGAAAGCTTGTGGTCTCTTG  399
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTTCATGCCCAAACACTGCCTTCCCTCGGGGAAAGCTTGTGGTCTCTTG  400

seq1  TCTCTCCATCTTTCTTTGTGTCACCTTCTGCCCTTCCCACTTTACATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCATCTTTCTTTGTGTCACCTTCTGCCCTTCCCACTTTACATTTT  450

seq1  CCTTATTTGGTTCAAAACTTGTTTTTTGTTTGTTGTTGTTGTTGTTTTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTGGTTCAAAACTTGTTTTTTGTTTGTTGTTGTTGTTGTTTTGA  500

seq1  GACAGAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTG  550

seq1  AACTAGTCTGGCCTCGAACTCAGAGATCTGCCTGCCTCTGCCTCCTGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTCTGGCCTCGAACTCAGAGATCTGCCTGCCTCTGCCTCCTGAGT  600

seq1  GCTGGGATTGAAGATGTGGGCCACCACTGCCCAGCTGGCTCAAAACTCTC  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTGGGATTGAAGATGTGGGCCACCACTGCCCAGCTGGTTCAAAACTCTC  650

seq1  AGTCAC-TTGATTTTTCTCAACCTTTTTTTGTTTGTTTTTA-TTTTTTGT  697
      | |||| |||||||||||||||||||||||||||| || || ||||||| 
seq2  AATCACTTTGATTTTTCTCAACCTTTTTTTGTTTGGTTCTATTTTTTTGG  700

seq1  TTTTTTTTTTTTGTTTT  714
      ||| |||||||||||||
seq2  TTTATTTTTTTTGTTTT  717

seq1: chr9_104328597_104329565
seq2: B6Ng01-104A15.g_68_1030 (reverse)

seq1  AAGATCAAGATTATCATGAAGCAGTCAATTGATAGAGGTCTGGAAACCCC  50
      |||||||||| ||||||||||||| ||| |||||| |||||||||| |||
seq2  AAGATCAAGA-TATCATGAAGCAGCCAA-TGATAGGGGTCTGGAAA-CCC  47

seq1  TCTGGGCATGGGCTGCACGTAACAAAAAAGAACAGATGTGACTCTCTGAG  100
      |||||||| ||||||||||||   ||||||| |||| ||| |||||||||
seq2  TCTGGGCAAGGGCTGCACGTA--CAAAAAGAGCAGAAGTG-CTCTCTGAG  94

seq1  CTTTCCCAGAGAAGTTACTGGCTAGCCACTTGCATGTCTCAGGACTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAGAGAAGTTACTGGCTAGCCACTTGCATGTCTCAGGACTGGCC  144

seq1  AGGCTCTCTTGTTGGCTTTCATCCTCAAGAGCATCATTCTGTTCTTTCAC  200
      || || ||||||||  ||||||| ||||||| |||||| |||||||||||
seq2  AGACTTTCTTGTTGCTTTTCATCTTCAAGAGAATCATT-TGTTCTTTCAC  193

seq1  TAACTGCCTTTATTTCTATCAAACACAAGTCCCTGGTTCAGTTAGTTGGT  250
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  TAACTGCCTTTATTT-TATCAAACACAAGTCCCTGTTTCAGTTAGTTGGT  242

seq1  CCAGATAGAAGCACTCTCAGCAGCCACCCTCTCTGGACTCAGATCCACAT  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGAAACACTCTCAGCAGCCACCCTCTCTGGACTCAGATCCACAT  292

seq1  CT-ATAACAGTATAGTTTTGTTGATCTGCAGGCTAGCCTGGGCTTCTCA-  348
      || | |||||||||||||||||||| ||||||||||| ||||||||||| 
seq2  CTAAAAACAGTATAGTTTTGTTGATTTGCAGGCTAGCATGGGCTTCTCAT  342

seq1  TTTGCATGTTAGCAGGGCATGGTTCCAAGGAAAAAAAAATTTCAAGGTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGTTAGCAGGGCATGGTTCCAAGGAAAAAAAAATTTCAAGGTCC  392

seq1  TTTCAAGTACAGGCTGGGCACGGGTCTCATCATGTTACTGCACTAACATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTACAGGCTGGGCACGGGTCTCATCATGTTACTGCACTAACATT  442

seq1  CCCCTGGCCAAGCAAAGCATGGAACCAGGTCAGACACAGGAAGTTGGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGCCAAGCAAAGCATGGAACCAGGTCAGACACAGGAAGTTGGAAA  492

seq1  ACAGATGTTAATGGGAAGGACTGCAGAATCATACTGCAAACAGGTATGGA  548
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAGATGTTAATGGGAAGGACTGCAGAATCATATTGCAAACAGGTATGGA  542

seq1  TATGTGGGGGGAATAACTGAGGCCACTTTCTGCAAACAATCTGTCCATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGGGGAATAACTGAGGCCACTTTCTGCAAACAATCTGTCCATTT  592

seq1  GCCCTTTTTCTTCCATGAGCAGGCAGAGGCAAAAAAAAAAAAAGGGATCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTTTCTTCCATGAGCAGGCAGAGGCAAAAAAAAAAAAAGGGATCT  642

seq1  AAGTCACTTTATAGTTTATACAGAAAATCAGCTCTTCTTCCCACAGGGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTTTATAGTTTATACAGAAAATCAGCTCTTCTTCCCACAGGGCC  692

seq1  ACGCCTGCTCAGGCACCCACCCACAGGGCCACGCCTGCTCAGGCACCCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTGCTCAGGCACCCACCCACAGGGCCACGCCTGCTCAGGCACCCAC  742

seq1  CCACTGAGCGAGCTGGAGGATGCACAGTCACTACTGCCCCACTGTTTGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCGAGCTGGAGGATGCACAGTCACTACTGCCCCACTGTTTGGT  792

seq1  CTTGGGCCTGGAGAGCAGGCTTCTTGGTCCTGATTGCCTTGGATATACCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCCTGGAGAGCAGGCTTCTTGGTCCTGATTGCCTTGGATATACCT  842

seq1  CACGGCCCCTCATATTTGAGAAGCTTTCGGTAATTGCTTGCTACCTGAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCCCCTCATATTTGAGAAGCTTTCGGTAATTGCTTGCTACCTGAAG  892

seq1  GAACCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGGAATGTAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGGAATGTAGAA  942

seq1  CGCTGGCAGAAGGGAGAATTC  969
      |||||||||||||||||||||
seq2  CGCTGGCAGAAGGGAGAATTC  963