BAC Information

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BAC

Clone NameB6Ng01-104H17
Chromosome9 (Build37)
Map Location 99,414,923 - 99,598,755
singlet/doubletdoublet
Overlap geneArmc8, Dbr1, A4gnt, Dzip1l, Cldn18
Upstream gene4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534
Downstream geneEG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104H17.bB6Ng01-104H17.g
ACCDH912769DH912770
length1,1941,108
definitionDH912769|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H17, 5' end.DH912770|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,414,923 - 99,416,110)(99,597,644 - 99,598,755)
sequence
gaattctttggaaggtcagctttaagaaggtaacttacaatttagtcacc
aattaaggaattatcaactttgagtttgctgtatttatagcaaagccaag
tcctacaagatgctgtatctgtggtgccatggaaacccttgaaatgttca
ggtgtttgcttcaatacacaggtaaggaaggctcaggagtaattctttac
agctgcccgatggaagaggcaaatacagaacctgctgtggtgcttttgaa
ataaccatttcgaactgtcacaccttgtaaaactatgaaaacagaaactc
acaggcatatacactcttaaccaaaacaccaaataacaacaaaatcaagt
tataaacaaaggatagaatgtttcatggagaatgggtaacaaactatgaa
aactgtcttcaaatgccaacctcctataaaatcttatagcactagaacca
gagagagaatgtgaatgcgttggggattcgttttctaggaatagagataa
ttagagcaatagtgatagtgtcaatcgtggctggcaatacttagctaacc
ataaataatgttttaaaagttaggattttaaaatgtatatcaaattatta
taaaacaaatgtgaaatgagagattcattatagaaagagtatgtttctaa
aatataataattcttcggaaatggtcttattgacaatttgggcagtttac
attcttcattataaatccatatttacatttcaatatgctgcttatctttt
cttcaaacacacaaaagacacatatggtgtttatttttctctgataaggt
aattttaaagtaagcaaacaaccgatgccattcacggagtgcttatcctg
tggccagtgtcatgctaaatataaacacattatgctgactcttccttgct
aagaaaaggcactggaaggagagtctcggttttcactgttccctcttttg
gtctcattttcttctgccatgatttattctgctcatattttttctaagtt
caatttaaagataaaagaagctagtccaatgggtgtcacctacagtccga
accactcacaaggctggaggcttaagacaggagtgtcagctagccttgga
aacagccgcgacttttgtcacttttaaaaaaagaaaaaaatttcccgacc
atatcctccacgaaggcataaccgaaaacttcttccagttcttg
gaattcaacggccaatggttagtcagccattctgttacaggaatagaata
ccctacagtcttcatctgaactcatttcagcataaactgccacagaaaca
ttgcgatcccttaagttggtccttgttcttcgcccacaggcatctgtgca
atcattggtgtgtctgtgtttgccaacatgctggtgaccaacttctggat
gtccacagctaacatgtacagcggcatgggcggcatgggtggcatggtgc
agaccgttcagaccaggtaacccgctagtccacttcatagtgatccacag
tgaatattgaaagaggatgattaaaccgtatgcttaatgtgactgtcagt
gcctgaaatagcaaacatttatcagaggcaaccattccatatcgtaactc
aacaatgatctggaaattcaaaaacttaatttccatgaaatacccttgct
gatatgacttgaggctgatctggtatttgccctgaaatacagtgacagtc
cacagtttttatctagcatgcttacacgggccccattgtggtggctaact
cacaatgctaatgaatgtcaacttagaccctcagtccataatggcagctt
ggtgggagcagggaaaatcttcaagagaaagaagtatggtgccttacagg
tgaggaaactgatattccctcctgtactgctgccttctctctctctcatt
catttgttcaacaaatgtattgaatacctactgtgacccaggcagagctg
agagtgcaagaggcagtcaaagcccccactcatgtggagatctaggagat
ggagatgaagcctcactatacctggaggtggggggagcaggacctttttt
gaatttttgaggtttatttctttttattctatgtgtatgagtgtttgcct
ctgtgtatgcctatatatcacattgtgcagtgcctgaggagaccagagag
gtgtcatatcccttgaggctggagttagaggatggttcaaaagctgccat
gtgggtgctagaaatgaacccaggtcctctggaaaagcaggcacttgagt
cactccttcagccagggtaaatgtttaatggaaaagcaatattcatccta
atttggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99414923_99416110
seq2: B6Ng01-104H17.b_35_1228

seq1  GAATTCTTTGGAAGGTCAGCTTTAAGAAGGTAACTTACAATTTAGTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAAGGTCAGCTTTAAGAAGGTAACTTACAATTTAGTCACC  50

seq1  AATTAAGGAATTATCAACTTTGAGTTTGCTGTATTTATAGCAAAGCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGAATTATCAACTTTGAGTTTGCTGTATTTATAGCAAAGCCAAG  100

seq1  TCCTACAAGATGCTGTATCTGTGGTGCCATGGAAACCCTTGAAATGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAAGATGCTGTATCTGTGGTGCCATGGAAACCCTTGAAATGTTCA  150

seq1  GGTGTTTGCTTCAATACACAGGTAAGGAAGGCTCAGGAGTAATTCTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGCTTCAATACACAGGTAAGGAAGGCTCAGGAGTAATTCTTTAC  200

seq1  AGCTGCCCGATGGAAGAGGCAAATACAGAACCTGCTGTGGTGCTTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCGATGGAAGAGGCAAATACAGAACCTGCTGTGGTGCTTTTGAA  250

seq1  ATAACCATTTCGAACTGTCACACCTTGTAAAACTATGAAAACAGAAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATTTCGAACTGTCACACCTTGTAAAACTATGAAAACAGAAACTC  300

seq1  ACAGGCATATACACTCTTAACCAAAACACCAAATAACAACAAAATCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATATACACTCTTAACCAAAACACCAAATAACAACAAAATCAAGT  350

seq1  TATAAACAAAGGATAGAATGTTTCATGGAGAATGGGTAACAAACTATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAAGGATAGAATGTTTCATGGAGAATGGGTAACAAACTATGAA  400

seq1  AACTGTCTTCAAATGCCAACCTCCTATAAAATCTTATAGCACTAGAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTTCAAATGCCAACCTCCTATAAAATCTTATAGCACTAGAACCA  450

seq1  GAGAGAGAATGTGAATGCGTTGGGGATTCGTTTTCTAGGAATAGAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAATGTGAATGCGTTGGGGATTCGTTTTCTAGGAATAGAGATAA  500

seq1  TTAGAGCAATAGTGATAGTGTCAATCGTGGCTGGCAATACTTAGCTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCAATAGTGATAGTGTCAATCGTGGCTGGCAATACTTAGCTAACC  550

seq1  ATAAATAATGTTTTAAAAGTTAGGATTTTAAAATGTATATCAAATTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATGTTTTAAAAGTTAGGATTTTAAAATGTATATCAAATTATTA  600

seq1  TAAAACAAATGTGAAATGAGAGATTCATTATAGAAAGAGTATGTTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAATGTGAAATGAGAGATTCATTATAGAAAGAGTATGTTTCTAA  650

seq1  AATATAATAATTCTTCGGAAATGGTCTTATTGACAATTTGGGCAGTTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATAATTCTTCGGAAATGGTCTTATTGACAATTTGGGCAGTTTAC  700

seq1  ATTCTTCATTATAAATCCATATTTACATTTCAATATGCTGCTTATCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCATTATAAATCCATATTTACATTTCAATATGCTGCTTATCTTTT  750

seq1  CTTCAAACACACAAAAGACACATATGGTGTTTATTTTTCTCTGATAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACACACAAAAGACACATATGGTGTTTATTTTTCTCTGATAAGGT  800

seq1  AA-TTTAAAGTAAGCAAACAACCGATGCCATTCACGGAGTGCTTATCCTG  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAGTAAGCAAACAACCGATGCCATTCACGGAGTGCTTATCCTG  850

seq1  TGGCCAGTGTCATGCTAAATATAAACACATTATGCTGACTCTTCCTTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGTGTCATGCTAAATATAAACACATTATGCTGACTCTTCCTTGCT  900

seq1  AGGAAAAGGCACTGGAAGGAGAGTCTCGGTTTTCACTGTTTCCTCTTTTG  949
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAAAAGGCACTGGAAGGAGAGTCTCGGTTTTCACTGTTCCCTCTTTTG  950

seq1  TTCTCATTTTCTTCTGCCATGATTTATTCTGCTCATATTTTTTCTAAAGT  999
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCTCATTTTCTTCTGCCATGATTTATTCTGCTCATATTTTTTCT-AAGT  999

seq1  TCAATTTAAAGATAAAAAGAAGCTAGTCCAAT-GGTGTCACCTACAGTCC  1048
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TCAATTTAAAGAT-AAAAGAAGCTAGTCCAATGGGTGTCACCTACAGTCC  1048

seq1  GAACCACTCACAAGGCT-GAGGCTTAGACCAGGAGTGTCAGCTAGCC-TG  1096
      ||||||||||||||||| ||||||||   |||||||||||||||||| ||
seq2  GAACCACTCACAAGGCTGGAGGCTTAAGACAGGAGTGTCAGCTAGCCTTG  1098

seq1  GACACAG-CGCGAC-TCTGTCAC-TTTAAAAAAAGAAAAAGA-ATCCCAA  1142
      || |||| |||||| | |||||| |||||||||||||||| |  |||| |
seq2  GAAACAGCCGCGACTTTTGTCACTTTTAAAAAAAGAAAAAAATTTCCCGA  1148

seq1  CCTAATCTCCCCAGAAGGCATAACCGAAAACTCTTTCCAGTTCTTG  1188
      ||  |||  ||  |||||||||||||||||||  ||||||||||||
seq2  CCATATCCTCCACGAAGGCATAACCGAAAACTTCTTCCAGTTCTTG  1194

seq1: chr9_99597644_99598755
seq2: B6Ng01-104H17.g_68_1175 (reverse)

seq1  TGCCAAATATAGGTATCGATATTGCTTTTCCATTAAACATTTTCCTGTGG  50
      |||||||| |||| ||  |||||||||||||||||||||||| ||  |||
seq2  TGCCAAAT-TAGG-ATGAATATTGCTTTTCCATTAAACATTTACC-CTGG  47

seq1  CTGGAGAGATGGCTC-AGTGGCTGCTTTTCCAGAGGACCTGGGTTCAATT  99
      ||| ||   || ||| |||| |||||||||||||||||||||||||| ||
seq2  CTGAAGGAGTGACTCAAGTGCCTGCTTTTCCAGAGGACCTGGGTTCATTT  97

seq1  CTCAGCACCCACATGGCAGC-TCTGAACCAT-CTCTAACTCCAGCCTCAA  147
      || ||||||||||||||||| | |||||||| ||||||||||||||||||
seq2  CT-AGCACCCACATGGCAGCTTTTGAACCATCCTCTAACTCCAGCCTCAA  146

seq1  GGGATATGACACCCTCTTCTGGTCTCCTCAGGCACTGCACAATGTGATAT  197
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  GGGATATGACA-CCTC-TCTGGTCTCCTCAGGCACTGCACAATGTGATAT  194

seq1  ATAGGCATACACAGAGGCAAACACTCATACACATAGAATAAAAAGAAATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAGGCATACACAGAGGCAAACACTCATACACATAGAATAAAAAGAAAT-  243

seq1  AAACCTCAAAAATTCAAAAAAGGTCCTGCTCCCCCCACCTCCAGGTATAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCAAAAATTCAAAAAAGGTCCTGCTCCCCCCACCTCCAGGTATAG  293

seq1  TGAGGCTTCATCTCCATCTCCTAGATCTCCACATGAGTGGGGGCTTTGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTCATCTCCATCTCCTAGATCTCCACATGAGTGGGGGCTTTGAC  343

seq1  TGCCTCTTGCACTCTCAGCTCTGCCTGGGTCACAGTAGGTATTCAATACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTGCACTCTCAGCTCTGCCTGGGTCACAGTAGGTATTCAATACA  393

seq1  TTTGTTGAACAAATGAATGAGAGAGAGAGAAGGCAGCAGTACAGGAGGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAACAAATGAATGAGAGAGAGAGAAGGCAGCAGTACAGGAGGGA  443

seq1  ATATCAGTTTCCTCACCTGTAAGGCACCATACTTCTTTCTCTTGAAGATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTTTCCTCACCTGTAAGGCACCATACTTCTTTCTCTTGAAGATT  493

seq1  TTCCCTGCTCCCACCAAGCTGCCATTATGGACTGAGGGTCTAAGTTGACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCTCCCACCAAGCTGCCATTATGGACTGAGGGTCTAAGTTGACA  543

seq1  TTCATTAGCATTGTGAGTTAGCCACCACAATGGGGCCCGTGTAAGCATGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGCATTGTGAGTTAGCCACCACAATGGGGCCCGTGTAAGCATGC  593

seq1  TAGATAAAAACTGTGGACTGTCACTGTATTTCAGGGCAAATACCAGATCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAAACTGTGGACTGTCACTGTATTTCAGGGCAAATACCAGATCA  643

seq1  GCCTCAAGTCATATCAGCAAGGGTATTTCATGGAAATTAAGTTTTTGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAGTCATATCAGCAAGGGTATTTCATGGAAATTAAGTTTTTGAAT  693

seq1  TTCCAGATCATTGTTGAGTTACGATATGGAATGGTTGCCTCTGATAAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATCATTGTTGAGTTACGATATGGAATGGTTGCCTCTGATAAATG  743

seq1  TTTGCTATTTCAGGCACTGACAGTCACATTAAGCATACGGTTTAATCATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATTTCAGGCACTGACAGTCACATTAAGCATACGGTTTAATCATC  793

seq1  CTCTTTCAATATTCACTGTGGATCACTATGAAGTGGACTAGCGGGTTACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAATATTCACTGTGGATCACTATGAAGTGGACTAGCGGGTTACC  843

seq1  TGGTCTGAACGGTCTGCACCATGCCACCCATGCCGCCCATGCCGCTGTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGAACGGTCTGCACCATGCCACCCATGCCGCCCATGCCGCTGTAC  893

seq1  ATGTTAGCTGTGGACATCCAGAAGTTGGTCACCAGCATGTTGGCAAACAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCTGTGGACATCCAGAAGTTGGTCACCAGCATGTTGGCAAACAC  943

seq1  AGACACACCAATGATTGCACAGATGCCTGTGGGCGAAGAACAAGGACCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACCAATGATTGCACAGATGCCTGTGGGCGAAGAACAAGGACCAA  993

seq1  CTTAAGGGATCGCAATGTTTCTGTGGCAGTTTATGCTGAAATGAGTTCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGGATCGCAATGTTTCTGTGGCAGTTTATGCTGAAATGAGTTCAG  1043

seq1  ATGAAGACTGTAGGGTATTCTATTCCTGTAACAGAATGGCTGACTAACCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACTGTAGGGTATTCTATTCCTGTAACAGAATGGCTGACTAACCA  1093

seq1  TTGGCCGTTGAATTC  1112
      |||||||||||||||
seq2  TTGGCCGTTGAATTC  1108