BAC Information

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BAC

Clone NameB6Ng01-104O06
Chromosome9 (Build37)
Map Location 90,998,070 - 90,998,993
singlet/doubletsinglet
Overlap genenone
Upstream geneMorf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925, EG434428
Downstream geneLOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104O06.bB6Ng01-104O06.g
ACCDH913062DH913063
length9181,159
definitionDH913062|Mus musculus domesticus DNA, BAC clone: B6Ng01-104O06, 5' end.DH913063|Mus musculus domesticus DNA, BAC clone: B6Ng01-104O06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccataaaaatacaaaacctgaagccatgcatacatgcagatgttt
gtaagttaaaaaataaaaaagaaagagaaaaggaaagaaggaagaaagaa
agaaggagagaaagagagatgaaggaaggaaggaaggaaggaaggaagga
aggaaggaaggaaggagaaagtgtaagaataagaagcaaagaaacaaaag
aaaatgttctgataaagacttattagacaaacaaccttcaaagaaaccag
tgagttcatttcatttggacacctacttctaggaaggccttctgggttat
ttgatgccctagtgcccactttcatttgcaagtggttaccaatttgagat
atttttctgattactactgtcagaggctgagctagaaagatcctaaaaac
ctggctatgttgtgttcttcagaagtaaattacataagagagaaaataag
tacaatcatatgtgatctaattactcccacaagctttgtgtcaccatctg
caccattgcgtcttgcaggtaggtcatcactgaagatctaaatctttgta
ggtgagttggtctttatctttctcctttggtaatatgcagagcatcttcc
tgtaccaaagactctcacataggagtgaaggctctaggttgccaccagct
ccacttctctcaatgagatatgcaggcactgtctttagcgataaggttct
taccctcagttttgtggagagcaagcaatcaccttggcaatactgttggt
tggttgagggttcctatgaagctccctgagccaacactcaattagttgta
cccaaattcattattggaagcttcattagtggtgagagatttttcagttg
gggactatctccccattatttggcagtttcatttaattacttcaggcatg
ggtatattaaagaagtat
gaattctcacccgaggaataccgaaaggctgagaagcacctgagaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaacctgagat
tccatctcacaccagtcagaatggctaagataaaaattcaggtgacatca
gatgctggcaaggatgtggagaaagaggcacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcagttcctcag
aaaattggacatagtactaccagaggatcccgcaatacctctcctgggca
tatatccataagatgccccaacaggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaaccctgatg
cccctcaacagaggaatggatacaaaaaatgtggtacatttaacaataga
gtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaat
ggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaaag
aactcaaatgaaatgtactcactgataattggatattagcccagaaactt
agtatagcgagatataaggtacaatatgcaaaacacatgaaactgaagaa
gaacgaagaccaaagtgtggacactttgctcctttttagaattggaaaca
atcacccatggaaggagttacagagaaaaagtttggagctgagacaaaag
gatggaccatctagagactgccatatccagggatccatcccataattagc
ctccaaacactgacaccattgcatacactagcaagcctttgttgttagga
ccttgatatagctgtctcttgtgagactaggccgggcctagcaaacccag
aagtggatgctcacagtcaagtattggatggatcacagggccccaatgga
gatctagagaaagtatccaagagctaagagatctacaaccctataggtgg
acaacattatgaactagccagtacccagagctctgactctagctgcattg
tatcaaaagatgctagttgcatcactgtatagaaggccatgtcagcaaac
tttaatttccagtacaggaaacgcaggccaaatgggaatggtggataggg
gagtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90998070_90998993
seq2: B6Ng01-104O06.b_48_965

seq1  GAATTCCATAAAAATACAAAACCTGAAGCCATGCATACATGCAGATGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAAATACAAAACCTGAAGCCATGCATACATGCAGATGTTT  50

seq1  GTAAGTTAAAAAATAAAAAAGAAAGAGAAAAGGAAAGAAGGAAGAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTAAAAAATAAAAAAGAAAGAGAAAAGGAAAGAAGGAAGAAAGAA  100

seq1  AGAAGGAGAGAAAGAGAGATGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAGAAAGAGAGATGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  150

seq1  AGGAAGGAAGGAAGGAGAAAGTGTAAGAATAAGAAGCAAAGAAACAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAGAAAGTGTAAGAATAAGAAGCAAAGAAACAAAAG  200

seq1  AAAATGTTCTGATAAAGACTTATTAGACAAACAACCTTCAAAGAAACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTCTGATAAAGACTTATTAGACAAACAACCTTCAAAGAAACCAG  250

seq1  TGAGTTCATTTCATTTGGACACCTACTTCTAGGAAGGCCTTCTGGGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCATTTCATTTGGACACCTACTTCTAGGAAGGCCTTCTGGGTTAT  300

seq1  TTGATGCCCTAGTGCCCACTTTCATTTGCAAGTGGTTACCAATTTGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCCCTAGTGCCCACTTTCATTTGCAAGTGGTTACCAATTTGAGAT  350

seq1  ATTTTTCTGATTACTACTGTCAGAGGCTGAGCTAGAAAGATCCTAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGATTACTACTGTCAGAGGCTGAGCTAGAAAGATCCTAAAAAC  400

seq1  CTGGCTATGTTGTGTTCTTCAGAAGTAAATTACATAAGAGAGAAAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATGTTGTGTTCTTCAGAAGTAAATTACATAAGAGAGAAAATAAG  450

seq1  TACAATCATATGTGATCTAATTACTCCCACAAGCTTTGTGTCACCATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCATATGTGATCTAATTACTCCCACAAGCTTTGTGTCACCATCTG  500

seq1  CACCATTGCGTCTTGCAGGTAGGTCATCACTGAAGATCTAAATCTTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTGCGTCTTGCAGGTAGGTCATCACTGAAGATCTAAATCTTTGTA  550

seq1  GGTGAGTTGGTCTTTATCTTTCTCCTTTGGTAATATGCAGAGCATCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTGGTCTTTATCTTTCTCCTTTGGTAATATGCAGAGCATCTTCC  600

seq1  TGTACCAAAGACTCTCACATAGGAGTGAAGGCTCTAGGTTGCCACCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAAAGACTCTCACATAGGAGTGAAGGCTCTAGGTTGCCACCAGCT  650

seq1  CCACTTCTCTCAATGAGATATGCAGGCACTGTCTTTAGCGATAAGGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTCTCAATGAGATATGCAGGCACTGTCTTTAGCGATAAGGTTCT  700

seq1  TACCCTCAG-TTTGTGGAGAGCAAGCAATCACCTTGGCAATACTGTTGGT  749
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCAGTTTTGTGGAGAGCAAGCAATCACCTTGGCAATACTGTTGGT  750

seq1  TGGTTGAGGGTTCCTATGAAGCTCCCTGAGCCAACAACTCAATTAGTTGT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGTTGAGGGTTCCTATGAAGCTCCCTGAGCCAAC-ACTCAATTAGTTGT  799

seq1  AACCCAAATTCATTATTGGAAGCTTCAATTAGTGGTGAGAGATTTTTCAG  849
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -ACCCAAATTCATTATTGGAAGCTTC-ATTAGTGGTGAGAGATTTTTCAG  847

seq1  TTGGGGCACTATCTCCCCATTATTTGGCAGTTTCATTTATATTACTTTCA  899
      |||||| |||||||||||||||||||||||||||||||| ||||| ||||
seq2  TTGGGG-ACTATCTCCCCATTATTTGGCAGTTTCATTTA-ATTAC-TTCA  894

seq1  GGCATGGGTATATTTAAAGAAGTAT  924
      |||||||||||| ||||||||||||
seq2  GGCATGGGTATA-TTAAAGAAGTAT  918