BAC Information

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BAC

Clone NameB6Ng01-105A17
Chromosome9 (Build37)
Map Location 46,647,456 - 46,781,263
singlet/doubletdoublet
Overlap gene2900052N01Rik
Upstream geneBace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890
Downstream geneD930036J05, Cadm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105A17.bB6Ng01-105A17.g
ACCDH913172DH913173
length1,2101,033
definitionDH913172|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A17, 5' end.DH913173|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,647,456 - 46,648,367)(46,780,220 - 46,781,263)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtcct
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaaaccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcac
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtaaaaaaaaaaaaaaaaaaaaaaaagaaaggtggatagaaaacagc
agtcgaggctcctatgtggtatgcttctttagcaacaccttgaggtggca
catgtcatctatgctcacattccacagcttagaatatagccatgtggcta
tagtgatgaccaaggaggctgggctatacagtctagtttgaaggaagaag
gggagaatacagagattgctgagccatacccagcatgacacagctgcagt
ctactctcagagtcaggtctttgacttctaggctcagtgatctcccactc
tatagtttacagctaagccttagctaaccaacaaagcttggcccccgctc
tgggttctaggtctagaaatgttttcatgtataagaatataatatcatga
ttatgtgttatgattatttggcttcgggggctatatatacacatctatgt
actcaccatctctcatgaagtagtagcaaatctaactggaagactttatc
ctcaagaaagtagcagctctatatctgattggaaggtagagccttggtca
ggaacgttaatctcagttctcccttccacaattttgtggttccataccat
aaggtggaga
gaattctgtggttcttaaaacatgccaaggccaagaaacagtttcctcta
gtatctgtgattccttgttgcatgggcaacttctaagaactccatttaaa
catctctttgtgtggagggaaccaaggagccatggaaacttatgtgagtc
taggcaagtaagaggatatgattatgaatatatcatcacccaagctaagc
acggagcttgaaggactttcagcaagaatttaactagtggtctcgtgagc
ttatgatagctgctagggcacagagagaatgcctaagtctttatttacta
aacgtctggtggaggattcggtgtacagaaatagagaacatcttaaaaca
gtggttctcaacctgtgggtcctgaccccttcaagattttcacagggttg
tccatcagatatcctgcatatcagatgttcacattacagttcataatgct
agcaaaattaaagttatgaagtagcaacaagtaattctatggttgaggtc
accacagcacgaggaactgtattaaagggttgcagcattaggaagttgaa
agccactgttctaaaagagcccaagtggggaagcagagtggctcagtgga
tgaaggtgcttgatgccaaggaagatgacctgagttcagttctagggacc
catatggtgggcatagagaatgacgtccatcagttattcttagacctcca
cacaggtaccgtgagtgacacatgcagcccaactcccttcccatattaaa
taaataaggaattaaataagtgaatcagtaaatgaataaataaataaagc
aattgcccacaaaactatagactgtcagcatagatgactaagccaccctc
agacttgctagggatttctggagagggtgaaggctgggctgaacatggtg
atggagtggatgagccctgtgaactagaaggcactccatgagatggagca
tgtgcataaaaatcagtggaacaaacctccacatgagcagcctaggagtt
atagctatttagcgctactatgagtatgatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_46647456_46648367
seq2: B6Ng01-105A17.b_380_1253

seq1  TGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGA  50

seq1  AATGGATCAATTCACATTCTTCTACATGATAACCGCCAGTTGTGCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATCAATTCACATTCTTCTACATGATAACCGCCAGTTGTGCCAGCA  100

seq1  CCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCT  150

seq1  TGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCA  200

seq1  ATTCTGTTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGT  250

seq1  TTTGATCACAATTGCTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCACAATTGCTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGAAAGG  300

seq1  TGGATAGAAAACAGCAGTCGAGGCTCCTATGTGGTATGCTTCTTTAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGAAAACAGCAGTCGAGGCTCCTATGTGGTATGCTTCTTTAGCAA  350

seq1  CACCTTGAGGTGGCACATGTCATCTATGCTCACATTCCACAGCTTAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGAGGTGGCACATGTCATCTATGCTCACATTCCACAGCTTAGAAT  400

seq1  ATAGCCATGTGGCTATAGTGATGACCAAGGAGGCTGGGCTATACAGTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATGTGGCTATAGTGATGACCAAGGAGGCTGGGCTATACAGTCTA  450

seq1  GTTTGAAGGAAGAAGGGGAGAATACAGAGATTGCTGAGCCATACCCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGGAAGAAGGGGAGAATACAGAGATTGCTGAGCCATACCCAGCA  500

seq1  TGACACAGCTGCAGTCTACTCTCAGAGTCAGGTCTTTGACTTCTAGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGCTGCAGTCTACTCTCAGAGTCAGGTCTTTGACTTCTAGGCTC  550

seq1  AGTGATCTCCCACTCTATAGTTTACAGCTAAGCCTTAGCTAACCAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTCCCACTCTATAGTTTACAGCTAAGCCTTAGCTAACCAACAAA  600

seq1  GCTTGGCCCCCGCTCTTGGTTCTAGGTCTAGAAATGTTTTCATGTATAAG  650
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTTGGCCCCCGCTCTGGGTTCTAGGTCTAGAAATGTTTTCATGTATAAG  650

seq1  AATATTAATAATCATGATTATTGTGTTTAATGGTTTATTTTGGCTTCGGT  700
      |||| |||| |||||||||| ||||||  ||| ||   ||||||||||| 
seq2  AATA-TAAT-ATCATGATTA-TGTGTT--ATGATT--ATTTGGCTTCGG-  692

seq1  GTGCTATATTATACACATTCTATGTAACCTCAACCATCTCTTCATGAAGT  750
      | |||||| |||||||| ||||||||  ||| |||||||| |||||||||
seq2  GGGCTATA-TATACACA-TCTATGTA--CTC-ACCATCTC-TCATGAAGT  736

seq1  AAGTAGGCCAATATCCTAACT-GAGAACCTTATACCTCAGAGATAGTAGG  799
       |||| || |||   |||||| ||  || |||| ||||| ||| |||| |
seq2  -AGTA-GCAAAT---CTAACTGGAAGACTTTAT-CCTCA-AGAAAGTA-G  778

seq1  CAGCTC-ATATCTGAATTTGAGAGGTAAAGAGGCTTTGGGTCCAGGACCT  848
      |||||| ||||||||  |||  ||||  |||| |||  ||| ||||| | 
seq2  CAGCTCTATATCTGA--TTGGAAGGT--AGAGCCTT--GGT-CAGGAAC-  820

seq1  TTTAATCTCAATGTCTCTCCTTTCCACCACATTGCTGTGGTTCCCATCAG  898
       ||||||||| |   ||||| ||   ||||| |  ||||||| ||||   
seq2  GTTAATCTCAGT---TCTCCCTT---CCACAATTTTGTGGTT-CCAT--A  861

seq1  CCATAAGGTTGGAG  912
      |||||||| |||||
seq2  CCATAAGG-TGGAG  874

seq1: chr9_46780220_46781263
seq2: B6Ng01-105A17.g_69_1101 (reverse)

seq1  AGCATCATACTCTATAGTAGCGCTAAATAGCTTATAACTCCTTGGCTGCT  50
      |||||||||||| |||||||||||||||||| |||||||||| |||||||
seq2  AGCATCATACTC-ATAGTAGCGCTAAATAGC-TATAACTCCTAGGCTGCT  48

seq1  CATGGTGGGAGGTTTCTGTTCCACTG-TTTTTATGCACATTGCTCCATCT  99
      ||||   |||||||  |||||||||| |||||||||||| ||||||||||
seq2  CATG--TGGAGGTT--TGTTCCACTGATTTTTATGCACA-TGCTCCATCT  93

seq1  CCCTGGAGTGCCCTTCTAGTTCACAGGGCTTCATCCCACTCCATCACCCA  149
       | ||||||| |||||||||||||||||| |||| ||||||||||| |||
seq2  -CATGGAGTG-CCTTCTAGTTCACAGGGC-TCAT-CCACTCCATCA-CCA  138

seq1  TGTTCAGCCCAGCCTTCACCCTCTCCAGAAATCCCTAGCAAGTCTGAGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCCCAGCCTTCACCCTCTCCAGAAATCCCTAGCAAGTCTGAGGG  188

seq1  TGGCTTAGTCATCTATGCTGACAGTCTATAGTTTTGTGGGCAATTGCTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGTCATCTATGCTGACAGTCTATAGTTTTGTGGGCAATTGCTTT  238

seq1  ATTTATTTATTCATTTACTGATTCACTTATTTAATTCCTTATTTATTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTCATTTACTGATTCACTTATTTAATTCCTTATTTATTTAA  288

seq1  TATGGGAAGGGAGTTGGGCTGCATGTGTCACTCACGGTACCTGTGTGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAGGGAGTTGGGCTGCATGTGTCACTCACGGTACCTGTGTGGAG  338

seq1  GTCTAAGAATAACTGATGGACGTCATTCTCTATGCCCACCATATGGGTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGAATAACTGATGGACGTCATTCTCTATGCCCACCATATGGGTCC  388

seq1  CTAGAACTGAACTCAGGTCATCTTCCTTGGCATCAAGCACCTTCATCCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTGAACTCAGGTCATCTTCCTTGGCATCAAGCACCTTCATCCAC  438

seq1  TGAGCCACTCTGCTTCCCCACTTGGGCTCTTTTAGAACAGTGGCTTTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACTCTGCTTCCCCACTTGGGCTCTTTTAGAACAGTGGCTTTCAA  488

seq1  CTTCCTAATGCTGCAACCCTTTAATACAGTTCCTCGTGCTGTGGTGACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAATGCTGCAACCCTTTAATACAGTTCCTCGTGCTGTGGTGACCT  538

seq1  CAACCATAGAATTACTTGTTGCTACTTCATAACTTTAATTTTGCTAGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATAGAATTACTTGTTGCTACTTCATAACTTTAATTTTGCTAGCAT  588

seq1  TATGAACTGTAATGTGAACATCTGATATGCAGGATATCTGATGGACAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTGTAATGTGAACATCTGATATGCAGGATATCTGATGGACAACC  638

seq1  CTGTGAAAATCTTGAAGGGGTCAGGACCCACAGGTTGAGAACCACTGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAATCTTGAAGGGGTCAGGACCCACAGGTTGAGAACCACTGTTT  688

seq1  TAAGATGTTCTCTATTTCTGTACACCGAATCCTCCACCAGACGTTTAGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTTCTCTATTTCTGTACACCGAATCCTCCACCAGACGTTTAGTA  738

seq1  AATAAAGACTTAGGCATTCTCTCTGTGCCCTAGCAGCTATCATAAGCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGACTTAGGCATTCTCTCTGTGCCCTAGCAGCTATCATAAGCTCA  788

seq1  CGAGACCACTAGTTAAATTCTTGCTGAAAGTCCTTCAAGCTCCGTGCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACCACTAGTTAAATTCTTGCTGAAAGTCCTTCAAGCTCCGTGCTTA  838

seq1  GCTTGGGTGATGATATATTCATAATCATATCCTCTTACTTGCCTAGACTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGTGATGATATATTCATAATCATATCCTCTTACTTGCCTAGACTC  888

seq1  ACATAAGTTTCCATGGCTCCTTGGTTCCCTCCACACAAAGAGATGTTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGTTTCCATGGCTCCTTGGTTCCCTCCACACAAAGAGATGTTTAA  938

seq1  ATGGAGTTCTTAGAAGTTGCCCATGCAACAAGGAATCACAGATACTAGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTCTTAGAAGTTGCCCATGCAACAAGGAATCACAGATACTAGAG  988

seq1  GAAACTGTTTCTTGGCCTTGGCATGTTTTAAGAACCACAGAATTC  1044
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTTTCTTGGCCTTGGCATGTTTTAAGAACCACAGAATTC  1033