BAC Information

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BAC

Clone NameB6Ng01-105B17
Chromosome9 (Build37)
Map Location 56,931,739 - 57,088,192
singlet/doubletdoublet
Overlap geneSin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1
Upstream genePstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik
Downstream gene1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105B17.bB6Ng01-105B17.g
ACCDH913216DH913217
length1,084934
definitionDH913216|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B17, 5' end.DH913217|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,931,739 - 56,932,819)(57,087,261 - 57,088,192)
sequence
gaattcaatgtttaggacctctgcctgctctggtcacgtagctgacttcg
gacgaaccagaagagggtgtcagatttcattatgggtggttgtgaaccac
catgtggttgctgagatttgaactcatgacctttggaagagcaagagcag
tcagtgtcttacccactgagccatctcgccagttcttgaggtgtattttg
aaagcagtatagagaatggaggagagatgcttggaaagtatttatctgct
gtctggatgaaggatgctaaaggctggaaggaaaggagtggctgtttttc
taaaaggaaagtgactagttggaggtaggaaattagcaaaggaatataat
tttaaaaagtaactctgaataccatcttttcagtgttttttgtttttttt
ttaaagactgccttccaagtgctgggattaaggcatgcaccaccactgcc
cggcttggctgctacttcttagctttagattttactggtttaaaacctag
atgttgttaggcagtggtagcccatgtctttaatcccagaattcaggagg
cagaagcaggccagcctgatgtacagaagagttccaggacagccagggcc
acacagagaagaaaccctgtctcaaaaacacaaaacaaaccaatgaaacc
catatgttaatcttgtaagattactttctaataagaaaccagttttttat
aaatgataaaccaaatatacatgaagaacacaacacaggactatgaaaaa
aattttaacattctttaggcactgcattctaaccaaaaatctcacttgaa
attttatagcttttggtcccattgtatgtgattttttgtgatgttcaaat
gttattccatgaaccagtttataggaaaatgttaaaaagataaaggggct
ggagagatggctcagcagttaagagcactagctattcttcagaggaccct
gagttcaattcccagcaattacatggtggttccacaaccatctgtattgg
gatctgatgctctcttctggtacctctatccttcaattaagaccttcctt
aggaaataaaataaaagcctggttgtggtgcgca
gcaggaaaccactgcttgtccatactgcaggctccagccaagacttccaa
gggtgcggcgtcaggtgacagacacaatgatgttctttgcaagtcccctt
tggaagggcgtcctcaggcttgggtagaactcagtgtagagccctagcct
aggatgccagaggccctgagtcccaccccattacccagatgtccacttct
gccagtagctgtctagggctctgcctccagagcaaggtgccctgaaactg
ccctagccaccaagtggcctcctgaaaagcccttgtcttgtggagctgca
gattcaaatgggaacagatatacctttcccacagcctcaacttttattat
ggttaatttttttttttttttttttggaatagttaaatgtccttgggcag
ggagagttaatgccctgggtgagttaagtcatgaggagatgtgctgttga
caggggtgtggctatatgaaggatgcgaaagcatcagcccgtgggaaatg
gcaaaaccttccctgggctaggctcccctgcagactgcttctaatgggat
tggttaaacctgcatccttgaagctgtaagcaataaccccactcacctcc
ctgttcaactctatataataaacatgctgcgcttccaggatactttggct
tctttagtagagagcccagtccacctggtctccttttttctgtgcatgtg
gccgtgtgtctgtgtatgtggtcgtgtttctttattctccagtcaggtca
attcctggagctgtggtggataaagtgccatgttctttcctgtccttaag
taagtgctagtggtatttttgggggtggggacagcatattagaagtgagt
tacaagttgctaaccgttgctgtggggatctgagcatggcccaccctgcc
tctccccagctttggtctcagcgcagtcggctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_56931739_56932819
seq2: B6Ng01-105B17.b_44_1127

seq1  GAATTCAATGTTTAGGACCTCTGCCTGCTCTGGTCACGTAGCTGACTTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTTTAGGACCTCTGCCTGCTCTGGTCACGTAGCTGACTTCG  50

seq1  GACGAACCAGAAGAGGGTGTCAGATTTCATTATGGGTGGTTGTGAACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAACCAGAAGAGGGTGTCAGATTTCATTATGGGTGGTTGTGAACCAC  100

seq1  CATGTGGTTGCTGAGATTTGAACTCATGACCTTTGGAAGAGCAAGAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTGCTGAGATTTGAACTCATGACCTTTGGAAGAGCAAGAGCAG  150

seq1  TCAGTGTCTTACCCACTGAGCCATCTCGCCAGTTCTTGAGGTGTATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTTACCCACTGAGCCATCTCGCCAGTTCTTGAGGTGTATTTTG  200

seq1  AAAGCAGTATAGAGAATGGAGGAGAGATGCTTGGAAAGTATTTATCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTATAGAGAATGGAGGAGAGATGCTTGGAAAGTATTTATCTGCT  250

seq1  GTCTGGATGAAGGATGCTAAAGGCTGGAAGGAAAGGAGTGGCTGTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATGAAGGATGCTAAAGGCTGGAAGGAAAGGAGTGGCTGTTTTTC  300

seq1  TAAAAGGAAAGTGACTAGTTGGAGGTAGGAAATTAGCAAAGGAATATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAAAGTGACTAGTTGGAGGTAGGAAATTAGCAAAGGAATATAAT  350

seq1  TTTAAAAAGTAACTCTGAATACCATCTTTTCAGTGTTTTTTGTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGTAACTCTGAATACCATCTTTTCAGTGTTTTTTGTTTTTTTT  400

seq1  TTAAAGACTGCCTTCCAAGTGCTGGGATTAAGGCATGCACCACCACTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACTGCCTTCCAAGTGCTGGGATTAAGGCATGCACCACCACTGCC  450

seq1  CGGCTTGGCTGCTACTTCTTAGCTTTAGATTTTACTGGTTTAAAACCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTGGCTGCTACTTCTTAGCTTTAGATTTTACTGGTTTAAAACCTAG  500

seq1  ATGTTGTTAGGCAGTGGTAGCCCATGTCTTTAATCCCAGAATTCAGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTAGGCAGTGGTAGCCCATGTCTTTAATCCCAGAATTCAGGAGG  550

seq1  CAGAAGCAGGCCAGCCTGATGTACAGAAGAGTTCCAGGACAGCCAGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAGGCCAGCCTGATGTACAGAAGAGTTCCAGGACAGCCAGGGCC  600

seq1  ACACAGAGAAGAAACCCTGTCTCAAAAACACAAAACAAACCAATGAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAGAAACCCTGTCTCAAAAACACAAAACAAACCAATGAAACC  650

seq1  CATATGTTAATCTTGTAAGATTACTTTCTAATAAGAAACCAGTTTTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTAATCTTGTAAGATTACTTTCTAATAAGAAACCAGTTTTTTAT  700

seq1  AAATGATAAACCAAATATACATGAAGAACACAACACAGGACTATGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAAACCAAATATACATGAAGAACACAACACAGGACTATGAAAAA  750

seq1  AATTTTAACATTCTTTAGGCACTGCATTCTAACCAAAAATCTCACTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAACATTCTTTAGGCACTGCATTCTAACCAAAAATCTCACTTGAA  800

seq1  ATTTTATAGC-TTTGGTCCCATTGTATGTGA-TTTTTGTGATGTTCAAAT  848
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  ATTTTATAGCTTTTGGTCCCATTGTATGTGATTTTTTGTGATGTTCAAAT  850

seq1  GTTATTCCATGAACCAGTTTATAGGAAAATGTTAAAAAGATAAAGGGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCATGAACCAGTTTATAGGAAAATGTTAAAAAGATAAAGGGGCT  900

seq1  GGAGAGATGGCTCAGCAGTTAAGAGCACTAGCTATTCTTCAGA-GACCCT  947
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAGAGATGGCTCAGCAGTTAAGAGCACTAGCTATTCTTCAGAGGACCCT  950

seq1  GAGTTCAATTCCCAGCAATTACATGGTGGTT-CACAACCATCTGTAATGG  996
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  GAGTTCAATTCCCAGCAATTACATGGTGGTTCCACAACCATCTGTATTGG  1000

seq1  GATCTGATGCTCTCTTCTGGTACTCATATACATAAAAATAAAGACAT--C  1044
      |||||||||||||||||||||||   ||| | |   ||| ||||| |  |
seq2  GATCTGATGCTCTCTTCTGGTACCTCTATCCTT--CAATTAAGACCTTCC  1048

seq1  TTAAGAAATAAAATAAAAGCCTGGTGGTGGTGGCGCA  1081
      ||| ||||||||||||||||||||| ||||| |||||
seq2  TTAGGAAATAAAATAAAAGCCTGGTTGTGGT-GCGCA  1084

seq1: chr9_57087261_57088192
seq2: B6Ng01-105B17.g_80_1013 (reverse)

seq1  GCAG-CGACTGCGCTG-GAACAAAGCTGGGGGAGGGGCAGGGTGGGCCAT  48
      |||| ||||||||||| || ||||||| |||||| |||||||||||||||
seq2  GCAGCCGACTGCGCTGAGACCAAAGCT-GGGGAGAGGCAGGGTGGGCCAT  49

seq1  GCTCAGAT-CCCACAGC-ACGGTTAGCAACTTGTAACTCACTTCTGACTA  96
      |||||||| |||||||| ||||||||||||||||||||||||||| | ||
seq2  GCTCAGATCCCCACAGCAACGGTTAGCAACTTGTAACTCACTTCT-AATA  98

seq1  CTGCTGTCCCCACCCCC-AAAATACCACTAGCACTTACCTAAGGACAGGA  145
       |||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  -TGCTGTCCCCACCCCCAAAAATACCACTAGCACTTACTTAAGGACAGGA  147

seq1  AAGAACATGGCACTTTATCCACCACAGCTCCAGGAATTGACCTGACTGGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATGGCACTTTATCCACCACAGCTCCAGGAATTGACCTGACTGGA  197

seq1  GAATAAAGAAACACGACCACATACACAGACACACGGCCACATGCACAGAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGAAACACGACCACATACACAGACACACGGCCACATGCACAGAA  247

seq1  AAAAGGAGACCAGGTGGACTGGGCTCTCTACTAAAGAAGCCAAAGTATCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGACCAGGTGGACTGGGCTCTCTACTAAAGAAGCCAAAGTATCC  297

seq1  TGGAAGCGCAGCATGTTTATTATATAGAGTTGAACAGGGAGGTGAGTGGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCGCAGCATGTTTATTATATAGAGTTGAACAGGGAGGTGAGTGGG  347

seq1  GTTATTGCTTACAGCTTCAAGGATGCAGGTTTAACCAATCCCATTAGAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCTTACAGCTTCAAGGATGCAGGTTTAACCAATCCCATTAGAAG  397

seq1  CAGTCTGCAGGGGAGCCTAGCCCAGGGAAGGTTTTGCCATTTCCCACGGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCAGGGGAGCCTAGCCCAGGGAAGGTTTTGCCATTTCCCACGGG  447

seq1  CTGATGCTTTCGCATCCTTCATATAGCCACACCCCTGTCAACAGCACATC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTTTCGCATCCTTCATATAGCCACACCCCTGTCAACAGCACATC  497

seq1  TCCTCATGACTTAACTCACCCAGGGCATTAACTCTCCCTGCCCAAGGACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGACTTAACTCACCCAGGGCATTAACTCTCCCTGCCCAAGGACA  547

seq1  TTTAACTATTCCAAAAAAAAAAAAAAAAAAATTAACCATAATAAAAGTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTATTCCAAAAAAAAAAAAAAAAAAATTAACCATAATAAAAGTTG  597

seq1  AGGCTGTGGGAAAGGTATATCTGTTCCCATTTGAATCTGCAGCTCCACAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGGGAAAGGTATATCTGTTCCCATTTGAATCTGCAGCTCCACAA  647

seq1  GACAAGGGCTTTTCAGGAGGCCACTTGGTGGCTAGGGCAGTTTCAGGGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGGCTTTTCAGGAGGCCACTTGGTGGCTAGGGCAGTTTCAGGGCA  697

seq1  CCTTGCTCTGGAGGCAGAGCCCTAGACAGCTACTGGCAGAAGTGGACATC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTCTGGAGGCAGAGCCCTAGACAGCTACTGGCAGAAGTGGACATC  747

seq1  TGGGTAATGGGGTGGGACTCAGGGCCTCTGGCATCCTAGGCTAGGGCTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAATGGGGTGGGACTCAGGGCCTCTGGCATCCTAGGCTAGGGCTCT  797

seq1  ACACTGAGTTCTACCCAAGCCTGAGGACGCCCTTCCAAAGGGGACTTGCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGTTCTACCCAAGCCTGAGGACGCCCTTCCAAAGGGGACTTGCA  847

seq1  AAGAACATCATTGTGTCTGTCACCTGACGCCGCACCCTTGGAAGTCTTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATCATTGTGTCTGTCACCTGACGCCGCACCCTTGGAAGTCTTGG  897

seq1  CTGGAGCCTGCAGTATGGACAAGCAGTGGTTTCCTGC  932
      |||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCTGCAGTATGGACAAGCAGTGGTTTCCTGC  934