BAC Information

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BAC

Clone NameB6Ng01-105C20
Chromosome9 (Build37)17 (Build37)
Map Location 12,468,701 - 12,469,21650,014,617 - 50,015,749
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039989, LOC622505
Downstream geneLOC100039680, LOC665285, LOC100039729, LOC100039758, Maml2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105C20.bB6Ng01-105C20.g
ACCDH913270DH913271
length4911,128
definitionDH913270|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C20, 5' end.DH913271|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,468,701 - 12,469,216)(50,014,617 - 50,015,749)
sequence
actcctagtcactcctattcttggggtgtaatagtggggtgatgggcaag
caacgaatcaggagctgtcacgccatatcaggtgctgaaacgtcacgctg
cgggttataaaagcagcgccattttcccggttcgggatcttcctgagaag
caagcaataaagcttttgccgcggaagattctggtttgttgcgtctttct
tgccggtcgagcgggacgcaatatattggtacatatttttaatatggtta
cagagggagcaccccaaaggaaactgcaccacagctatttaaaagctgag
gcaatgcaggatatttcggtgatcctgatgatataaatgtctcctatagg
taatgagaggtgggcctctccagagaacactcctgcttactggttttctg
gattaaaaatttaggcaaagccaggatgagagataaccaaatatagatat
atatacgtacatatatatatatatatatatatatatatatg
gaattcaggcgcatgtccccagcagccgacataagcagaaaacaggccaa
atcagtgggccagcaaaatgcttccccagacggcttccagacccacacat
ctcacaaaagtacaatgagacgtttgaaacataaaataaaacaagtccat
ttaaaagaagtggccggggtaagtgcttgtggaccccatagctgagcaga
ttacacacacacaggcgataaatttggttctctcttgtctagctgcagaa
cagaaagaagcacccagaattcctgagtttccattttctgacagcaggga
gcatactaactaatttatctgcagagatagaatttctccctgaaactaaa
cacaaggcagaatttatcgtgtggatcctcatgtaaaggacaccaagtga
cactgagtgatgtcttcagctgcagttttacaaaagacatcccagtgttg
ttcaaccagatgattcttgtatcgaccctccataaaagcgagaggtctgg
cattaaagcataactcacagaaagtgtttatgtgagcagccaggataata
ggatccaggtaccctgcttcctgacagccacagggtggggctgatgaaag
tgagagagtcttctgagggtaatgtgcccaccgagaccccacctctcctc
tggagcacgtatcctatcaaggtctagatcacatcctgatcacaatcgat
cgaaattctaacgagagctgtgattagaactttagaaatgccagagccca
gggaggcttttagggagggaggggcggagggaggcagccaatcagaggca
catgtccaggcatgttcccttgacccaaccctctgaagacatctgtttgc
cgatgctgtggagttgctttgtctactgtttcttttgtatttatggtaat
gagagacccaacgtcaccactgggcctgttctaaagacactaaggagccc
ctaaatcctactattccaggtcctttcctctgcccacccctatcttgcta
gctttgcaactaaaggagccctggatcatccccagcctgggggtgctttt
gtagaatgatctcccggactctctacagggccttggggaagtcaaaaggc
ctcttgggccggtctaccttatgacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_12468701_12469216
seq2: B6Ng01-105C20.b_206_540 (reverse)

seq1  CATATATATATATATATATGGCACTTAAACTCAAG-AAGGAGACAAAGCT  49
      |||||||||||||||||||   |  || |   | | | | | | | | ||
seq2  CATATATATATATATATAT---ATATATATATATGTACGTATATATATCT  47

seq1  AGGATGCTCTGCTAGCAAGCATCAATGGTAAACTTGACACAGCCTACTAT  99
         ||  |  | || |   ||||  |||    |||      |||||    
seq2  ---ATATTTGGTTATCTCTCATC-CTGG----CTT-----TGCCTA----  80

seq1  CCTCTGTGGAAGTTAAAATTGAGGAATTACCAGAATAAGAATTGCTTGAA  149
               || ||  |||  || ||  |||||  ||||           
seq2  ---------AATTTTTAATCCAGAAA--ACCAG--TAAG-----------  106

seq1  CACAAGTCTACAAGAGATTGTTTTGATTGATTATTGATTTGGGAAAACAC  199
                || |||  ||||                |  ||| |    
seq2  ----------CAGGAG--TGTT---------------CTCTGGAGA----  125

seq1  GGCCCACTATGATGCACATAATACTATCCTTGAGCAGGAAGCCTGGGCTT  249
      |||||||       | |  | ||    |||  || ||  |        ||
seq2  GGCCCAC-------CTCTCATTA----CCTATAGGAGACA--------TT  156

seq1  TATAAGAATTATAGTTGAGCAAGAGTGAGAGAATGACCCAGATAGCAGAC  299
      |||    || ||                 || || ||| | |||      
seq2  TAT----ATCAT----------------CAGGATCACCGAAATA------  180

seq1  AAAAATATAATATTCCTTCATGGTTCATTCCTCTAGGTTCTTGCC-CAGA  348
                   |||| ||                    ||||| ||| 
seq2  -------------TCCTGCA--------------------TTGCCTCAG-  196

seq1  CTTTCTTCAGAGATGGAAGATCACAAGCAGATGTCACCTGTATAAAACCC  398
      |||| |  | || ||   | |     |||| |  |    |  |    || 
seq2  CTTT-TAAATAGCTG--TGGT-----GCAGTTTCCTTTGGGGTGCTCCCT  238

seq1  CTGTTCCCCAAATTGCCTTTTGATCATAAAGTTTTATCACAGCAATGTTA  448
      ||||  ||              ||  ||||  | | |   | ||||  ||
seq2  CTGTAACC--------------ATATTAAAAATATGT---ACCAAT-ATA  270

seq1  TTAGACGCGT-TCTCACGACCGGCCAGGAAAGACGCAACAAACCAGAATC  497
      ||    ||||  | | ||||||| || |||||||||||||||||||||||
seq2  TT----GCGTCCCGCTCGACCGG-CAAGAAAGACGCAACAAACCAGAATC  315

seq1  TTCTGCGGC-AAAGCTTTAT  516
      ||| ||||| ||||||||||
seq2  TTCCGCGGCAAAAGCTTTAT  335

seq1: chr17_50014617_50015749
seq2: B6Ng01-105C20.g_69_1196

seq1  GAATTCAGGCGCATGTCCCCAGCAGCCGACATAAGCAGAAAACAGGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCGCATGTCCCCAGCAGCCGACATAAGCAGAAAACAGGCCAA  50

seq1  ATCAGTGGGCCAGCAAAATGCTTCCCCAGACGGCTTCCAGACCCACACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGGGCCAGCAAAATGCTTCCCCAGACGGCTTCCAGACCCACACAT  100

seq1  CTCACAAAAGTACAATGAGACGTTTGAAACATAAAATAAAACAAGTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAAGTACAATGAGACGTTTGAAACATAAAATAAAACAAGTCCAT  150

seq1  TTAAAAGAAGTGGCCGGGGTAAGTGCTTGTGGACCCCATAGCTGAGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAAGTGGCCGGGGTAAGTGCTTGTGGACCCCATAGCTGAGCAGA  200

seq1  TTACACACACACAGGCGATAAATTTGGTTCTCTCTTGTCTAGCTGCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACACACAGGCGATAAATTTGGTTCTCTCTTGTCTAGCTGCAGAA  250

seq1  CAGAAAGAAGCACCCAGAATTCCTGAGTTTCCATTTTCTGACAGCAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAGCACCCAGAATTCCTGAGTTTCCATTTTCTGACAGCAGGGA  300

seq1  GCATACTAACTAATTTATCTGCAGAGATAGAATTTCTCCCTGAAACTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTAACTAATTTATCTGCAGAGATAGAATTTCTCCCTGAAACTAAA  350

seq1  CACAAGGCAGAATTTATCGTGTGGATCCTCATGTAAAGGACACCAAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCAGAATTTATCGTGTGGATCCTCATGTAAAGGACACCAAGTGA  400

seq1  CACTGAGTGATGTCTTCAGCTGCAGTTTTACAAAAGACATCCCAGTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTGATGTCTTCAGCTGCAGTTTTACAAAAGACATCCCAGTGTTG  450

seq1  TTCAACCAGATGATTCTTGTATCGACCCTCCATAAAAGCGAGAGGTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCAGATGATTCTTGTATCGACCCTCCATAAAAGCGAGAGGTCTGG  500

seq1  CATTAAAGCATAACTCACAGAAAGTGTTTATGTGAGCAGCCAGGATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGCATAACTCACAGAAAGTGTTTATGTGAGCAGCCAGGATAATA  550

seq1  GGATCCAGGTACCCTGCTTCCTGACAGCCACAGGGTGGGGCTGATGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGGTACCCTGCTTCCTGACAGCCACAGGGTGGGGCTGATGAAAG  600

seq1  TGAGAGAGTCTTCTGAGGGTAATGTGCCCACCGAGACCCCACCTCTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGTCTTCTGAGGGTAATGTGCCCACCGAGACCCCACCTCTCCTC  650

seq1  TGGAGCACGTATCCTATCAAGGTCTAGATCACATCCTGATCACAATCGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCACGTATCCTATCAAGGTCTAGATCACATCCTGATCACAATCGAT  700

seq1  CGAAATTCTAACGAGAGCTGTGATTAGAACTTTAGAAATGCCAGAGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATTCTAACGAGAGCTGTGATTAGAACTTTAGAAATGCCAGAGCCCA  750

seq1  GGGAGGCTTTTAGGGAGGGAGGGGCGGAGGGAGGCAGCCAATCAGAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTTTTAGGGAGGGAGGGGCGGAGGGAGGCAGCCAATCAGAGGCA  800

seq1  CATGTCCAGGCATGTTCCCTTGACCCAACCCTCTGAAGACATCTGTCTGC  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATGTCCAGGCATGTTCCCTTGACCCAACCCTCTGAAGACATCTGTTTGC  850

seq1  CGATGCTGTGGAGTTGCTTTGTCTACTGTTTCTTTTGTATTTATGGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCTGTGGAGTTGCTTTGTCTACTGTTTCTTTTGTATTTATGGTAAT  900

seq1  GAGAGACCCAACGTCACCACT-GGCCTGTTCTAAAGACACCTAGGAGCCC  949
      ||||||||||||||||||||| ||||||||||||||||||  ||||||||
seq2  GAGAGACCCAACGTCACCACTGGGCCTGTTCTAAAGACACTAAGGAGCCC  950

seq1  CTAAATCCTACTATTCCAGGTCCTTTTCCCTCTGCCCCACCCCTATCTTG  999
      ||||||||||||||||||||||||||  |||||| |||||||||||||||
seq2  CTAAATCCTACTATTCCAGGTCCTTT--CCTCTG-CCCACCCCTATCTTG  997

seq1  CTAGCCTTGGCAACATAAGGAGCCCTTGGATCATCACCAGCCT-GGTGTG  1048
      |||| ||| |||||  ||||||||| ||||||||| ||||||| || |||
seq2  CTAG-CTTTGCAACTAAAGGAGCCC-TGGATCATCCCCAGCCTGGGGGTG  1045

seq1  CTTTTGAAG-ATGACTCCCCGGCACCCTC-AGAGGGCCTT-GGGAAGTCG  1095
      |||||| || |||| || || | || ||| | |||||||| |||||||| 
seq2  CTTTTGTAGAATGA-TCTCCCGGACTCTCTACAGGGCCTTGGGGAAGTCA  1094

seq1  AAAGGCCTCCTTGGGCCGGGTCCTACCTTATTGACTTC  1133
      |||||||| ||||||||||   |||||||| |||||||
seq2  AAAGGCCT-CTTGGGCCGG--TCTACCTTA-TGACTTC  1128