BAC Information

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BAC

Clone NameB6Ng01-105F03
Chromosome9 (Build37)
Map Location 114,485,409 - 114,617,318
singlet/doubletdoublet
Overlap geneLOC100043808, Cnot10, LOC665772, Dync1li1
Upstream genePdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71
Downstream geneCmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105F03.bB6Ng01-105F03.g
ACCDH913378DH913379
length9831,156
definitionDH913378|Mus musculus domesticus DNA, BAC clone: B6Ng01-105F03, 5' end.DH913379|Mus musculus domesticus DNA, BAC clone: B6Ng01-105F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,616,701 - 114,617,318)(114,485,409 - 114,486,582)
sequence
gaattcacctcacttagcctcctgcgtattgggactagaggtgagctagc
atgctctacttgaatgcagatcctaatcaggtctgtccacaactccttgc
tggttaggagtttctgccaggagctggggagatagctaacttggaaaagc
acttgttggcaagcacaagagttccttatctccaccactcacataaaagc
taggcccagtagtaagtactgtaatccaagcactgctaatgcagagaaaa
ccagatgtctgtggctcaccggccagctacggctgaactatatgagctcc
aggttcagtgagagaccccatctcaaaacaaaagacagatagataggctg
gaaagatggctaggctcttggcagaattttggttgtcagcaccatgggca
gctacaatggtataatgtagaagtttggtctttcttccttacagctacat
gctcccagaaatacgactgagagtgaaatgcatttatgaatatcttggcc
atatagctaggttcttctctgactagatcataatttaaaataacccattt
attctaatctactttctgccatgtggcttgtcatctgtgctcagatacca
cgtgtctgtcttgtcacatcttcctgagtggacattctttgttctatcct
gagctcagttacctgctggtgtacttccctctcatctcattaggggaaat
tttctcttgtctctcactatttcccagaattctttctcttcctgctagtg
acccacctcgtatttcctgactcagctcattgcccatagtttttttattg
acacatggtacttataagagattctttctctctacagtgtaattctagct
tcagggatccaaagttctcttctggattctgtaagctcctacactcacac
gtgaacacttcttacaatatacacacaaaatttaaaataaagaggtcacc
aggtggtggtgtatgcctttgatcccagcactc
gaattcaatgggagcctggccatcctgggctacagagtacacttcagcca
gggctagcagtgagactgtcacaagcctgcatttgatgctgagaactaca
tggatgaaggagagacccacgtcttcctgcaagttgtccccacacattca
taggtacaccacaattcagatacacatacccattcacactaaataaatga
acaaggtgaaaataattttaaaaagagaaaacaagctggggagggtgccc
actcctttaaccctggcattccttggaagcagaagcagacagatttctgt
gccttcaaagccggcatgagaacttaccttaaaggaattttttttttttt
tggcatctctgtttgtcctggaactcactatgtaaaccaggctggtctca
aattcacagagatccacctgcctttagagtgctgggattaaaggacccca
ctatgcccagcaaccttaacattaatagataaataaacaagtagagacca
aagagaaggcccagaaggaaagagcactggctgctcttccaagagaacac
aggctcaattcctagcacccatatggaggctcaccactgtctgtaactcc
actgttggcagattcgatgctctcctctggcctctgaaggcacccagcat
gtgcacagtacacatatataaatgcatgcatgcatgcaacacactcaaac
atatgaaaaaaaaagtaataaattaaaaataaacttggagggctggagag
ctggctcagcggttaagaacacctactgctctttgagaggttctgagttc
aattcccagcaaccacatggtggctcacaaccatctgtaacaagacttga
tttccctcttctggtatctgaagacagctacagtgtacttacatataata
aataaaataaatctttaaaaaaaaaacttagttttattttttaaagatta
tttattttatgtatatgagtacactgtagctgtattcagacccatcagag
aggcatcagatctcattacagatgttctgagccattgtaagtctcatgtg
gatgcctgggaattgaactaggacctccggaagcgcagccgagcttttaa
cggtgggcactcttcaactcaaattttttaggatgttttccttcgtcttt
tgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_114616701_114617318
seq2: B6Ng01-105F03.b_46_663 (reverse)

seq1  TGTGACAAGACAGACACGTGGTATCTGAGCACAGATGACAAGCCACATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAGACAGACACGTGGTATCTGAGCACAGATGACAAGCCACATGG  50

seq1  CAGAAAGTAGATTAGAATAAATGGGTTATTTTAAATTATGATCTAGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTAGATTAGAATAAATGGGTTATTTTAAATTATGATCTAGTCAG  100

seq1  AGAAGAACCTAGCTATATGGCCAAGATATTCATAAATGCATTTCACTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACCTAGCTATATGGCCAAGATATTCATAAATGCATTTCACTCTC  150

seq1  AGTCGTATTTCTGGGAGCATGTAGCTGTAAGGAAGAAAGACCAAACTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTATTTCTGGGAGCATGTAGCTGTAAGGAAGAAAGACCAAACTTCT  200

seq1  ACATTATACCATTGTAGCTGCCCATGGTGCTGACAACCAAAATTCTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATACCATTGTAGCTGCCCATGGTGCTGACAACCAAAATTCTGCCA  250

seq1  AGAGCCTAGCCATCTTTCCAGCCTATCTATCTGTCTTTTGTTTTGAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTAGCCATCTTTCCAGCCTATCTATCTGTCTTTTGTTTTGAGATG  300

seq1  GGGTCTCTCACTGAACCTGGAGCTCATATAGTTCAGCCGTAGCTGGCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTCACTGAACCTGGAGCTCATATAGTTCAGCCGTAGCTGGCCGG  350

seq1  TGAGCCACAGACATCTGGTTTTCTCTGCATTAGCAGTGCTTGGATTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACAGACATCTGGTTTTCTCTGCATTAGCAGTGCTTGGATTACAG  400

seq1  TACTTACTACTGGGCCTAGCTTTTATGTGAGTGGTGGAGATAAGGAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTACTGGGCCTAGCTTTTATGTGAGTGGTGGAGATAAGGAACTC  450

seq1  TTGTGCTTGCCAACAAGTGCTTTTCCAAGTTAGCTATCTCCCCAGCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTGCCAACAAGTGCTTTTCCAAGTTAGCTATCTCCCCAGCTCCT  500

seq1  GGCAGAAACTCCTAACCAGCAAGGAGTTGTGGACAGACCTGATTAGGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAACTCCTAACCAGCAAGGAGTTGTGGACAGACCTGATTAGGATC  550

seq1  TGCATTCAAGTAGAGCATGCTAGCTCACCTCTAGTCCCAATACGCAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCAAGTAGAGCATGCTAGCTCACCTCTAGTCCCAATACGCAGGAG  600

seq1  GCTAAGTGAGGTGAATTC  618
      ||||||||||||||||||
seq2  GCTAAGTGAGGTGAATTC  618

seq1: chr9_114485409_114486582
seq2: B6Ng01-105F03.g_70_1225

seq1  GAATTCAATGGGAGCCTGGCCATCCTGGGCTACAGAGTACACTTCAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGGAGCCTGGCCATCCTGGGCTACAGAGTACACTTCAGCCA  50

seq1  GGGCTAGCAGTGAGACTGTCACAAGCCTGCATTTGATGCTGAGAACTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGCAGTGAGACTGTCACAAGCCTGCATTTGATGCTGAGAACTACA  100

seq1  TGGATGAAGGAGAGACCCACGTCTTCCTGCAAGTTGTCCCCACACATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAGGAGAGACCCACGTCTTCCTGCAAGTTGTCCCCACACATTCA  150

seq1  TAGGTACACCACAATTCAGATACACATACCCATTCACACTAAATAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACACCACAATTCAGATACACATACCCATTCACACTAAATAAATGA  200

seq1  ACAAGGTGAAAATAATTTTAAAAAGAGAAAACAAGCTGGGGAGGGTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTGAAAATAATTTTAAAAAGAGAAAACAAGCTGGGGAGGGTGCCC  250

seq1  ACTCCTTTAACCCTGGCATTCCTTGGAAGCAGAAGCAGACAGATTTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTAACCCTGGCATTCCTTGGAAGCAGAAGCAGACAGATTTCTGT  300

seq1  GCCTTCAAAGCCGGCATGAGAACTTACCTTAAAGGAATTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAAAGCCGGCATGAGAACTTACCTTAAAGGAATTTTTTTTTTTTT  350

seq1  TGGCATCTCTGTTTGTCCTGGAACTCACTATGTAAACCAGGCTGGTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTCTGTTTGTCCTGGAACTCACTATGTAAACCAGGCTGGTCTCA  400

seq1  AATTCACAGAGATCCACCTGCCTTTAGAGTGCTGGGATTAAAGGACCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGAGATCCACCTGCCTTTAGAGTGCTGGGATTAAAGGACCCCA  450

seq1  CTATGCCCAGCAACCTTAACATTAATAGATAAATAAACAAGTAGAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCAGCAACCTTAACATTAATAGATAAATAAACAAGTAGAGACCA  500

seq1  AAGAGAAGGCCCAGAAGGAAAGAGCACTGGCTGCTCTTCCAAGAGAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGCCCAGAAGGAAAGAGCACTGGCTGCTCTTCCAAGAGAACAC  550

seq1  AGGCTCAATTCCTAGCACCCATATGGAGGCTCACCACTGTCTGTAACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAATTCCTAGCACCCATATGGAGGCTCACCACTGTCTGTAACTCC  600

seq1  ACTGTTGGCAGATTCGATGCTCTCCTCTGGCCTCTGAAGGCACCCAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGGCAGATTCGATGCTCTCCTCTGGCCTCTGAAGGCACCCAGCAT  650

seq1  GTGCACAGTACACATATATAAATGCATGCATGCATGCAACACACTCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGTACACATATATAAATGCATGCATGCATGCAACACACTCAAAC  700

seq1  ATATGAAAAAAAAAGTAATAAATTAAAAATAAACTTGGAGGGCTGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAAAAAAAGTAATAAATTAAAAATAAACTTGGAGGGCTGGAGAG  750

seq1  CTGGCTCAGCGGTTAAGAACACCTACTGCTCTTTGAGAGGTTCTGAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCAGCGGTTAAGAACACCTACTGCTCTTTGAGAGGTTCTGAGTTC  800

seq1  AATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGACCTGA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGACTTGA  850

seq1  -TTCCCTCTTCTGGTATCTGAAGACAGCTACAGTGTACTTACATATAATA  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTTCTGGTATCTGAAGACAGCTACAGTGTACTTACATATAATA  900

seq1  AATAAAATAAATCTTTAAAAAAAAAACTTAGTTTTAATTTTTTAAAGATT  949
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  AATAAAATAAATCTTTAAAAAAAAAACTTAGTTTT-ATTTTTTAAAGA-T  948

seq1  TATTTATTTTATGTATATGAGTACACTGTAGCTGTATTCAGACACATCAG  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATTTATTTTATGTATATGAGTACACTGTAGCTGTATTCAGACCCATCAG  998

seq1  AAGAGGGCATCAGATCTCATTACAGATGTTTCTGAGCCATTGTAAGTCAT  1049
       ||| ||||||||||||||||||||||| ||||||||||||||||||| |
seq2  -AGA-GGCATCAGATCTCATTACAGATG-TTCTGAGCCATTGTAAGTC-T  1044

seq1  CATGT-GATTGCTGGGAATTGAACTAGGACCTCTGGAAGCGCAGTCAGAG  1098
      ||||| |||  |||||||||||||||||||||| |||||||||| | |||
seq2  CATGTGGATGCCTGGGAATTGAACTAGGACCTCCGGAAGCGCAG-CCGAG  1093

seq1  CTCTTAACTGCTGGGCCATCTCTTCACACCCTCAAAATTTTTTTTATTAA  1148
      || ||||| | |||||   |||||||    ||||||   |||||||  | 
seq2  CTTTTAAC-GGTGGGC--ACTCTTCA---ACTCAAA---TTTTTTAGGA-  1133

seq1  TTTTTTTTCTTTTTCGTCTTTT-TGTT  1174
        | |||||   |||||||||| ||||
seq2  --TGTTTTC--CTTCGTCTTTTGTGTT  1156