BAC Information

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BAC

Clone NameB6Ng01-105O22
Chromosome1 (Build37)9 (Build37)
Map Location 64,486,060 - 64,486,42613,822,536 - 13,823,151
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
Downstream geneLOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105O22.bB6Ng01-105O22.g
ACCDH913820DH913821
length1,201918
definitionDH913820|Mus musculus domesticus DNA, BAC clone: B6Ng01-105O22, 5' end.DH913821|Mus musculus domesticus DNA, BAC clone: B6Ng01-105O22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,486,060 - 64,486,426)(13,822,536 - 13,823,151)
sequence
gaattcatgaaattcttagacaaatggatggaactagaaaataccatcct
gaatgaggcaacccaatcacaaaagaacacacatgatatgcactcactga
taagcggatattagcctagaagctcagaatacccaagaaacaatttgcaa
aacacatgaaactcaagatgaaggaagaccaaattgtggtttcttcaatc
cttcttagaagggggaacaaaatacccatggaaggagttacagagacaaa
gttcagagcagagactgaaggaatgaccatccagaaactgccccacctgc
aaatccatcccatatacaaccaccaaactcagatactattgcagatgcca
acaagagcttgctgacaggagcctggtatagcagtctcctgataggctct
gccagtgcctgactaaatcagatgtggatgctcacagtcatccactacac
ggagcatatggtcctcaatgaaggagctagagaaagtacccaaggagctg
gaggagtttgcagccccctaggaggaacaacaatatgaaataccagtaac
cccagagttccctgggacaaaaccaccaatcattccatctccaagggaga
atacacagtgtaactgtggctgcatagaatgaattgggtagtgttacttc
tgtttctattttgtggaatagtttgaaaagtattcatagtaggtctttga
aggtctgagaaaattctgcactaaaaccgtctggtcctggtgctgtcctc
caagaggagtagacagcaggaaataatcaaacttgggcctgaaatcaacc
aagtagaaacaaaaagaactatacaaagaatcaacaaaaccaggagctgg
ttctttgaggaaatcaacaagatagataaacccttagccagactcactag
agggcacagggacagcattcctaattaacaaaatcagaaatgaaaaggga
gacatacaacagatcctgaagaaatccaaacagcatcagatcctttctac
aaagctaatacctcaaaactggaaacctggatgaattgacaaatttctag
atatataccaataaccaaaaattaagtcagatcagataaaaacatcaaat
caatcataatctctaagaaatggaagtcaattggcattagaaacccgaac
atgggcctgttacctattgaagcatcatataggtcaggtccacctttggt
c
gaattccactcccaatgctacagcctttgctcctaggtacatgtcagctg
ctcagtggaaggtcttgagtatggaattctgacttagtgctggattttaa
cctcagttattagactgacagcgaggactagagtcagaagatcctggcaa
gacactggtgccttttggacttcttcagtgttctccagcatagggaaaat
ggttcatggggatcttcagaaacaatgccttcaacaatgttcatccaaat
ttcccaaattcaccccttaggatcccaaagttgtccccaaaactctagct
ttgaaacaacaggcctgcttttgcttagcactcagtatcctttgagttct
gactctgtcctggatcttcagtgtgttggccagctgtgtgtgcttctcca
ctgaaggagatagatgttcctttagccttaactgcttgtcatcagtgatc
cacagtttctcattatccatcttctttttttttattagatattttcttta
tttagatttcgaatgttatcccctttcctggtttcccctccgaaaatccc
tattccctctccctccccctgctcaccaacctacccactcccacttcctg
gcccttgcattcccctacattggggcatagaaccttcaccagaccaaggg
cctgtccttccattgatgacatctaagccatcctctgctacatatgcagc
tggagctatgagtcccaccatgtgtactctttggttggtggtttagtccc
tgtgagccctgagggtactggttagttcatattgttgttcatcctatagg
gctgcaaaccccttcagctccttgggtcctttctctagtttcttcattgg
ggaacttgtgctcagtccaatggatgactgtgagcatccacttctgtatt
tgtcaggcactggcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_64486060_64486426
seq2: B6Ng01-105O22.b_794_1244

seq1  CAAGAGGAGTAGACAGCAGGAAATAATCAAACTCAGGGCTGAAATCAACC  50
      |||||||||||||||||||||||||||||||||  || ||||||||||||
seq2  CAAGAGGAGTAGACAGCAGGAAATAATCAAACTTGGGCCTGAAATCAACC  50

seq1  AAATAGGAAAAAAAAAAAAAAAAAAGAACTATACAAAGAATCAACAAAGC  100
      || |||          ||| |||||||||||||||||||||||||||| |
seq2  AAGTAG----------AAACAAAAAGAACTATACAAAGAATCAACAAAAC  90

seq1  CAGGAGCTGGTTCTTTGAGAAAATCAACAAGGTAGATAAACCTTTAGCCA  150
      ||||||||||||||||||| ||||||||||| |||||||||| |||||||
seq2  CAGGAGCTGGTTCTTTGAGGAAATCAACAAGATAGATAAACCCTTAGCCA  140

seq1  GACTAACCAGAGGGCACAGAGACAGTA-TCCAAATTAATAAAATCAGAAA  199
      |||| || ||||||||||| ||||| | ||| |||||| |||||||||||
seq2  GACTCACTAGAGGGCACAGGGACAGCATTCCTAATTAACAAAATCAGAAA  190

seq1  TGAAAAGGGAAACAT--AACA-------ACTAAAT---------------  225
      |||||||||| ||||  ||||       |  ||||               
seq2  TGAAAAGGGAGACATACAACAGATCCTGAAGAAATCCAAACAGCATCAGA  240

seq1  --CTATCTTAAAA--TAAT-----TATTCTG-----TTTGCTGAATATTA  261
        || |||  |||  ||||      |  |||      | | |||||    
seq2  TCCTTTCTACAAAGCTAATACCTCAAAACTGGAAACCTGGATGAATTGAC  290

seq1  ACAGTTGAAAATAT------------TAAAATCATGT----TC---TACA  292
      | | ||  | ||||             ||||| | ||    ||   || |
seq2  AAATTTCTAGATATATACCAATAACCAAAAATTAAGTCAGATCAGATAAA  340

seq1  AACATC------------------AAGAGAGAGAAG----------AGAG  314
      ||||||                  |||| |  ||||            ||
seq2  AACATCAAATCAATCATAATCTCTAAGAAATGGAAGTCAATTGGCATTAG  390

seq1  GATCCAGA----------GTGACAAAGAGAAGCCTC-TCTGGGCAAGGAG  353
       | || ||          || ||  |  ||||| || | | ||     ||
seq2  AAACCCGAACATGGGCCTGTTACCTATTGAAGCATCATATAGG---TCAG  437

seq1  GTCCACCTTTGGTC  367
      ||||||||||||||
seq2  GTCCACCTTTGGTC  451

seq1: chr9_13822536_13823151
seq2: B6Ng01-105O22.g_68_683 (reverse)

seq1  AGGGGAATGCAAGGGCCAGGAAGTGGGAGTGGGTAGGTTGGTGAGCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATGCAAGGGCCAGGAAGTGGGAGTGGGTAGGTTGGTGAGCAGGG  50

seq1  GGAGGGAGAGGGAATAGGGATTTTCGGAGGGGAAACCAGGAAAGGGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGAGGGAATAGGGATTTTCGGAGGGGAAACCAGGAAAGGGGATA  100

seq1  ACATTCGAAATCTAAATAAAGAAAATATCTAATAAAAAAAAAGAAGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCGAAATCTAAATAAAGAAAATATCTAATAAAAAAAAAGAAGATGG  150

seq1  ATAATGAGAAACTGTGGATCACTGATGACAAGCAGTTAAGGCTAAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGAAACTGTGGATCACTGATGACAAGCAGTTAAGGCTAAAGGAA  200

seq1  CATCTATCTCCTTCAGTGGAGAAGCACACACAGCTGGCCAACACACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATCTCCTTCAGTGGAGAAGCACACACAGCTGGCCAACACACTGAA  250

seq1  GATCCAGGACAGAGTCAGAACTCAAAGGATACTGAGTGCTAAGCAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGGACAGAGTCAGAACTCAAAGGATACTGAGTGCTAAGCAAAAGC  300

seq1  AGGCCTGTTGTTTCAAAGCTAGAGTTTTGGGGACAACTTTGGGATCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGTTGTTTCAAAGCTAGAGTTTTGGGGACAACTTTGGGATCCTAA  350

seq1  GGGGTGAATTTGGGAAATTTGGATGAACATTGTTGAAGGCATTGTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAATTTGGGAAATTTGGATGAACATTGTTGAAGGCATTGTTTCTG  400

seq1  AAGATCCCCATGAACCATTTTCCCTATGCTGGAGAACACTGAAGAAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCCCATGAACCATTTTCCCTATGCTGGAGAACACTGAAGAAGTCC  450

seq1  AAAAGGCACCAGTGTCTTGCCAGGATCTTCTGACTCTAGTCCTCGCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCACCAGTGTCTTGCCAGGATCTTCTGACTCTAGTCCTCGCTGTC  500

seq1  AGTCTAATAACTGAGGTTAAAATCCAGCACTAAGTCAGAATTCCATACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATAACTGAGGTTAAAATCCAGCACTAAGTCAGAATTCCATACTC  550

seq1  AAGACCTTCCACTGAGCAGCTGACATGTACCTAGGAGCAAAGGCTGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTCCACTGAGCAGCTGACATGTACCTAGGAGCAAAGGCTGTAGC  600

seq1  ATTGGGAGTGGAATTC  616
      ||||||||||||||||
seq2  ATTGGGAGTGGAATTC  616