BAC Information

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BAC

Clone NameB6Ng01-106D01
Chromosome1 (Build37)9 (Build37)
Map Location 138,178,603 - 138,179,73768,522,187 - 68,522,460
singlet/doubletsingletsinglet
Overlap geneCamsap1l1
Upstream geneRnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25
Downstream gene9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106D01.bB6Ng01-106D01.g
ACCDH914002DH914003
length1,130313
definitionDH914002|Mus musculus domesticus DNA, BAC clone: B6Ng01-106D01, 5' end.DH914003|Mus musculus domesticus DNA, BAC clone: B6Ng01-106D01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(138,178,603 - 138,179,737)(68,522,187 - 68,522,460)
sequence
gaattcaggatacttagatcttgaccatgaagaaagaagccattagcgat
ctgatctggccgtggcgtatgaggaggtctttcagtatcgtggattatct
gtaacgcttcttcaatgcttggcgtttctatctgattcccgaactcgtct
agaagcactctgttttgtaaagccccatttggaagcttgtagtgagtact
ctcattagagttcagttcattcgtgttgagaggcatgggtgattggaggt
caccatgagggtcgacatgaagctcttcctcaatgctctcctcctcttct
ccgttcactggcttgaaggacagatttttcctaatgtgcttggatgcacg
gctgttgttgagagtgagcccttcattgctaacagagcggatgattcccc
ggtttggagtggagctctgcgcactgtcttctttatcaaaagaaatgtcg
aatgaaacgccatgcactgatgttctgaaaaagacgggaagacaaaacgt
ttaagaatctgcaggaaagaaacgactgtaaacatagcatcgagcagttt
ggaagtctgtcctttctccactgttcacggcctgctgaccccacggtgaa
ccgggctgcttcatctcctttcagttcatccctctcacctctgtgacctc
catgctgcccttttcaaagttaggtcctagctgaaatcatgcttggacaa
gctgactaattatagcaacaaagcagaaggagatgaagctggcatttttg
gtaacgtggctataccaagaataacttcgttcttaccttttctctttagg
ccacgttcctatgaagccatcaacataagacatagatgaaagaccttcta
attcctccttcaaatgcaaaaaagggaaactcacatattagacatatttg
agaattcattcatggcactaaaaggtggaccacagttgcaataaccacaa
acaagtaaataattcccttttttttagttatggggagaaaaaacgtattt
tattgctaaatacttggactaagcaagagaaggctcttgcgttaatctca
gtaactacctccttgccaaaataagtacattacaacaaagattttaaatt
tatataatgtatataacgtttactgtataa
tttactcattcagtagatccatgaagtctgccatgaatcagacctgggga
tatattgatggaaaagcaagtcatgatcgtttctgccctcatcaccctgt
gagcagacaagaggagatacagtcagaacccaacaaagcgggtgctgtgg
gaagtacaggatgtcatggaatatgcaggatggtacatacaatggacatg
ggagaccatggaatgctatccagagaaaatggcatctaaagactgaatgg
atgtaaatgtaaacaattaaaataggaaagtgaagaggaggaggaagagg
agggggaagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138178603_138179737
seq2: B6Ng01-106D01.b_46_1175

seq1  GAATTCAGGATACTTAGATCTTGACCATGAAGAAAGAAGCCATTAGCGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATACTTAGATCTTGACCATGAAGAAAGAAGCCATTAGCGAT  50

seq1  CTGATCTGGCCGTGGCGTATGAGGAGGTCTTTCAGTATCGTGGATTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTGGCCGTGGCGTATGAGGAGGTCTTTCAGTATCGTGGATTATCT  100

seq1  GTAACGCTTCTTCAATGCTTGGCGTTTCTATCTGATTCCCGAACTCGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGCTTCTTCAATGCTTGGCGTTTCTATCTGATTCCCGAACTCGTCT  150

seq1  AGAAGCACTCTGTTTTGTAAAGCCCCATTTGGAAGCTTGTAGTGAGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACTCTGTTTTGTAAAGCCCCATTTGGAAGCTTGTAGTGAGTACT  200

seq1  CTCATTAGAGTTCAGTTCATTCGTGTTGAGAGGCATGGGTGATTGGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAGAGTTCAGTTCATTCGTGTTGAGAGGCATGGGTGATTGGAGGT  250

seq1  CACCATGAGGGTCGACATGAAGCTCTTCCTCAATGCTCTCCTCCTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAGGGTCGACATGAAGCTCTTCCTCAATGCTCTCCTCCTCTTCT  300

seq1  CCGTTCACTGGCTTGAAGGACAGATTTTTCCTAATGTGCTTGGATGCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCACTGGCTTGAAGGACAGATTTTTCCTAATGTGCTTGGATGCACG  350

seq1  GCTGTTGTTGAGAGTGAGCCCTTCATTGCTAACAGAGCGGATGATTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTTGAGAGTGAGCCCTTCATTGCTAACAGAGCGGATGATTCCCC  400

seq1  GGTTTGGAGTGGAGCTCTGCGCACTGTCTTCTTTATCAAAAGAAATGTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGAGTGGAGCTCTGCGCACTGTCTTCTTTATCAAAAGAAATGTCG  450

seq1  AATGAAACGCCATGCACTGATGTTCTGAAAAAGACGGGAAGACAAAACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACGCCATGCACTGATGTTCTGAAAAAGACGGGAAGACAAAACGT  500

seq1  TTAAGAATCTGCAGGAAAGAAACGACTGTAAACATAGCATCGAGCAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATCTGCAGGAAAGAAACGACTGTAAACATAGCATCGAGCAGTTT  550

seq1  GGAAGTCTGTCCTTTCTCCACTGTTCACGGCCTGCTGACCCCACGGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTGTCCTTTCTCCACTGTTCACGGCCTGCTGACCCCACGGTGAA  600

seq1  CCGGGCTGCTTCATCTCCTTTCAGTTCATCCCTCTCACCTCTGTGACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCTGCTTCATCTCCTTTCAGTTCATCCCTCTCACCTCTGTGACCTC  650

seq1  CATGCTGCCCTTTTCAAAGTTAGGTCCTAGCTGAAATCATGCTTGGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCCCTTTTCAAAGTTAGGTCCTAGCTGAAATCATGCTTGGACAA  700

seq1  GCTGACTAATTATAGCAACAAAGCAGAAGGAGATGAAGCTGGCATTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTAATTATAGCAACAAAGCAGAAGGAGATGAAGCTGGCATTTTTG  750

seq1  GTAACGTGGCTATACCAAGAATAACTTCGTTCTTACCTTTTCTCTTTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGTGGCTATACCAAGAATAACTTCGTTCTTACCTTTTCTCTTTAGG  800

seq1  CCACGTTCCTATGAAGCCATCAACATAAGACATAGATG-AAGACCTTCTA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCACGTTCCTATGAAGCCATCAACATAAGACATAGATGAAAGACCTTCTA  850

seq1  ATTCCTCCTTCAAATGCAAAAAAAGGGAAACTCACATATTAGACATATTT  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTCCTCCTTCAAATGC-AAAAAAGGGAAACTCACATATTAGACATATTT  899

seq1  GAGAATTCATTCATGGCACTAAAAGGTGGAACCACAGTTGCAATAA-CAC  948
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  GAGAATTCATTCATGGCACTAAAAGGTGG-ACCACAGTTGCAATAACCAC  948

seq1  AAACAAAGTAAATAATTCCCTTTTTTTTAAGTTTATGGGAG-AAATACGT  997
      |||| ||||||||||||||||||||||| ||||   ||||| ||| ||||
seq2  AAAC-AAGTAAATAATTCCCTTTTTTTT-AGTTATGGGGAGAAAAAACGT  996

seq1  AATCTATAGCT-AATACTT-GACT-AGCAAGAG-AGGCTC-TGCGTTTAA  1042
      | | ||| ||| ||||||| |||| |||||||| |||||| |||| ||||
seq2  ATTTTATTGCTAAATACTTGGACTAAGCAAGAGAAGGCTCTTGCG-TTAA  1045

seq1  TCCTCAGTAAACTACCTCCCTGCCAAAATAAGTACA-TACATACAAAGAA  1091
      | |||||| |||||||||| |||||||||||||||| |||| ||||||| 
seq2  T-CTCAGT-AACTACCTCCTTGCCAAAATAAGTACATTACA-ACAAAGAT  1092

seq1  TTTTAATTTTTATTTATTATGTATATAGTGTTTTACCTGTATAA  1135
      ||| ||||    | ||| |||||||||  ||||   ||||||||
seq2  TTTAAATT----TATATAATGTATATAACGTTT--ACTGTATAA  1130

seq1: chr9_68522187_68522460
seq2: B6Ng01-106D01.g_340_384 (reverse)

seq1  TCCCCTTCAGAAAATGATTTACTTACTATTTACTTATTGATATTAGCGGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGTCTCATTCTAGTTTAGGCTAGATTGTAATGTGCTTTGTGATCTCAACT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTGGCAATCCCCCTGCCTCAGCTTTTCAGTGCTGATTACAGGTGTAAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCACCACTCTCTGCTATCTCCCCTCCTCTTCCTCCTCTTCCCCTTCATCT  200
               ||  || || ||||||||||||||||   ||| ||||| ||
seq2  ---------TCCCCT-TC-CCCCTCCTCTTCCTCC---TCCTCTTCA-CT  35

seq1  TTCTCTAAGATGAGAGTATCTGTCGTTCTAGGCTCCATCTCTTCACTTCC  250
      ||| |||   |                                       
seq2  TTC-CTATTTT---------------------------------------  45

seq1  AGCATAACTATAGCTGCCTATTTT  274
                              
seq2  ------------------------  45