BAC Information

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BAC

Clone NameB6Ng01-106D20
Chromosome16 (Build37)9 (Build37)
Map Location 18,535,128 - 18,535,21671,649,073 - 71,650,259
singlet/doubletsingletsinglet
Overlap geneGnb1l
Upstream gene4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2
Downstream geneTbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106D20.bB6Ng01-106D20.g
ACCDH914032DH914033
length1761,153
definitionDH914032|Mus musculus domesticus DNA, BAC clone: B6Ng01-106D20, 5' end.DH914033|Mus musculus domesticus DNA, BAC clone: B6Ng01-106D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,535,128 - 18,535,216)(71,649,073 - 71,650,259)
sequence
gaattcttcaccttcataataaaaagataacccacttaaaacaaaacaaa
acaaaaatggtctctcacacaattctgattgtcctggaactcactatgta
gaccaggctggtctctaactcacagagatctgcctgcctctgcctctgcc
tcctgagtgctgaaatcaaaggcatg
gaattcatagagatccaggggtgagtagagggaccatagctatagccatc
catagaagacagaggcagaggggatggaggagtcctggataagtgactgt
agtccatttctgccctgcttccctgtggtcaagcagagaatgtctgatga
tagttgttatgcaagcaaaaggctcctcagataaacaagttaggaactag
gtgcctgctgggtttgccggccatcagacctgaaccaacacactctcctc
tgaatctcctcccctcccaagccactcacctgctgggctctgaacaccct
gtggcttctcaccctatacctggcctaacggttcatttcttcattccttg
tggctctatcctggctcacaccccatcctcctccaggacacctctaattt
cctaggtgctgaagctggctttactgtcacacccctgccacaggcctgtg
ctccttcctctccgtggctgaagaaaagtggaatgtctcacggcttttga
ggccactggagaatgtggaattgacaggtggagaccgggccacagaagga
tagtactgactcgggggccccgtggggctaggaaccccatcataaagaca
gaaggtatctgcaggggctgcagaagggcaggcagatgagcagaggtgtg
aaactgaggaagacagatataaagagatcccctggtcctaagaaggacct
gggttccctatggtcctcactgtgagatccttcagaggtctcatgatgat
aaacttttccctaccagagtggctggagggaacctttattcctaccagtg
aaagagccagatcacaccttgttgactggttcctggagcgactcaggggc
agacagtgtaagtattcagttttcatcactacctacagtacacgtacgga
acacgtgcgtgcgtgcgtgcgtgcgtgcgtgcgcacatgcgtgcgagtga
gtgactcttcctctctagcagcaggtgaaagctgcagcttctgactgctg
ttcggagataccaagcgtaaggctgggattagctcatggtggagtgcttc
ctaacacacagactctgggtcataccagcatgggggcgggcatgttagct
ggacacagctctgggagagaccggcctctgcagagagatgagagtggaaa
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_18535128_18535216
seq2: B6Ng01-106D20.b_121_217

seq1  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACT--CAGAGAT  48
      |||||||||||||||| ||||||||||||||| ||  ||||  |||||||
seq2  TGTCCTGGAACTCACTATGTAGACCAGGCTGGTCTCTAACTCACAGAGAT  50

seq1  CTGCCTGCCTCTGCCTCT------TAAGTGCTGGAATTAAAGGCATG  89
      ||||||||||||||||||      | ||||||| ||| |||||||||
seq2  CTGCCTGCCTCTGCCTCTGCCTCCTGAGTGCTGAAATCAAAGGCATG  97

seq1: chr9_71649073_71650259
seq2: B6Ng01-106D20.g_68_1220 (reverse)

seq1  CCCTTTTCCCACTTCCTCATCTTCCTCTTGTCAGAGGGCCGGTGCTCTTC  50
      ||||||  |||||  |||||||  ||||   |||| ||||||| ||||  
seq2  CCCTTT--CCACT--CTCATCT--CTCT--GCAGA-GGCCGGT-CTCT--  38

seq1  CCCAGAGCTGTGTTCCCAGCCCTAAACATGCCCCGCCCCAATGCTGGGTA  100
      |||||||||||||  |||||    |||||| |||||||| ||||| ||||
seq2  CCCAGAGCTGTGT--CCAGC---TAACATG-CCCGCCCCCATGCT-GGTA  81

seq1  TTGACCCCAAGAAGTCTTGTGTGCTAAGGAAGCACTCCACCACTGAGCTA  150
       ||||||  || |||| |||||| | |||||||||||||||| |||||||
seq2  -TGACCC--AG-AGTC-TGTGTG-TTAGGAAGCACTCCACCA-TGAGCTA  124

seq1  TATCCCCAGCCCTAACGCTTGGTATCTGCGGAACAGGCAGTCAGGAGGCT  200
       || ||||| ||| ||||||||||||| | ||||| ||||||| || |||
seq2  -AT-CCCAG-CCTTACGCTTGGTATCT-CCGAACA-GCAGTCA-GAAGCT  168

seq1  GCAGCTTTCACCTGCTGCTAGAGAGGGAAGAGGTCACTCACTCGCACGCA  250
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  GCAGCTTTCACCTGCTGCTAGAGA-GGAAGA-GTCACTCACTCGCACGCA  216

seq1  TGTGCGCACGCACGCACGCACGCACGCACGCACGTGTTCCGTACGTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGCACGCACGCACGCACGCACGCACGCACGTGTTCCGTACGTGTAC  266

seq1  TGTAGGTAGTGATGAAAACTGAATACTTACACTGTCTGCCCCTGAGTCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTAGTGATGAAAACTGAATACTTACACTGTCTGCCCCTGAGTCGC  316

seq1  TCCAGG-ACCAGTCAACAAGGTGTGATCTGGCTCTTTCACTGGTAGGAAT  399
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAACCAGTCAACAAGGTGTGATCTGGCTCTTTCACTGGTAGGAAT  366

seq1  AAAGGTTCCCTCCAGCCACTCTGGTAGGGAAAAGTTTATCATCATGAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCCCTCCAGCCACTCTGGTAGGGAAAAGTTTATCATCATGAGAC  416

seq1  CTCCTGAAGGATCTCACAGTGAGGACCATAGGGAACCCAGGTCCTTCTTA  499
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-CTGAAGGATCTCACAGTGAGGACCATAGGGAACCCAGGTCCTTCTTA  465

seq1  GGACCAGGGGATCTCTTTATATCTGTCTTCCTCAGTTTCACACCTCTGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGGGGATCTCTTTATATCTGTCTTCCTCAGTTTCACACCTCTGCT  515

seq1  CATCTGCCTGCCCTTCTGCAGCCCCTGCAGATACCTTCTGTCTTTATGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCTGCCCTTCTGCAGCCCCTGCAGATACCTTCTGTCTTTATGAT  565

seq1  GGGGTTCCTAGCCCCACGGGGCCCCCGAGTCAGTACTATCCTTCTGTGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCCTAGCCCCACGGGGCCCCCGAGTCAGTACTATCCTTCTGTGGC  615

seq1  CCGGTCTCCACCTGTCAATTCCACATTCTCCAGTGGCCTCAAAAGCCGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTCTCCACCTGTCAATTCCACATTCTCCAGTGGCCTCAAAAGCCGTG  665

seq1  AGACATTCCACTTTTCTTCAGCCACGGAGAGGAAGGAGCACAGGCCTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCCACTTTTCTTCAGCCACGGAGAGGAAGGAGCACAGGCCTGTG  715

seq1  GCAGGGGTGTGACAGTAAAGCCAGCTTCAGCACCTAGGAAATTAGAGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGTGTGACAGTAAAGCCAGCTTCAGCACCTAGGAAATTAGAGGTG  765

seq1  TCCTGGAGGAGGATGGGGTGTGAGCCAGGATAGAGCCACAAGGAATGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGGAGGATGGGGTGTGAGCCAGGATAGAGCCACAAGGAATGAAG  815

seq1  AAATGAACCGTTAGGCCAGGTATAGGGTGAGAAGCCACAGGGTGTTCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACCGTTAGGCCAGGTATAGGGTGAGAAGCCACAGGGTGTTCAGA  865

seq1  GCCCAGCAGGTGAGTGGCTTGGGAGGGGAGGAGATTCAGAGGAGAGTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCAGGTGAGTGGCTTGGGAGGGGAGGAGATTCAGAGGAGAGTGTG  915

seq1  TTGGTTCAGGTCTGATGGCCGGCAAACCCAGCAGGCACCTAGTTCCTAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCAGGTCTGATGGCCGGCAAACCCAGCAGGCACCTAGTTCCTAAC  965

seq1  TTGTTTATCTGAGGAGCCTTTTGCTTGCATAACAACTATCATCAGACATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATCTGAGGAGCCTTTTGCTTGCATAACAACTATCATCAGACATT  1015

seq1  CTCTGCTTGACCACAGGGAAGCAGGGCAGAAATGGACTACAGTCACTTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTGACCACAGGGAAGCAGGGCAGAAATGGACTACAGTCACTTAT  1065

seq1  CCAGGACTCCTCCATCCCCTCTGCCTCTGTCTTCTATGGATGGCTATAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTCCTCCATCCCCTCTGCCTCTGTCTTCTATGGATGGCTATAGC  1115

seq1  TATGGTCCCTCTACTCACCCCTGGATCTCTATGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCCCTCTACTCACCCCTGGATCTCTATGAATTC  1153