BAC Information

Click to search

BAC

Clone NameB6Ng01-106J03
Chromosome9 (Build37)
Map Location 123,129,136 - 123,268,329
singlet/doubletdoublet
Overlap geneTmem158, Scp2-ps2
Upstream geneTmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1
Downstream geneLars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106J03.bB6Ng01-106J03.g
ACCDH914272DH914273
length1,0311,099
definitionDH914272|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J03, 5' end.DH914273|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,129,136 - 123,130,174)(123,267,229 - 123,268,329)
sequence
gaattctcaagatctgtgctcagagctgctggcatagctgagggcctgga
agtgttctaaagatagattcagaaaatgtatgcatctagaatgctgggag
tccagcgcctgccaactgctcctcctacctgctggatgttttccaaatct
gagcagaccactgacggaccctaggtgagctggccagctccttccatgaa
gttcctagctcattcgtctatctctcacttctaaactctgaccacatctg
ccatctgaggaaaactttgaaaattgacttattaaacaagataaagtagc
atggtggggaaagactatataggagaagatgaaagagcaaagtcagataa
aaatgattgctaactcccttagcaagatataggtaacattgtagctatgg
aacagaaacagattataataaaacagtttagggaaatttgtttagtttgg
ttttattcttgtttttgtttttcaaggcagactttctacctctacccctg
gcttttctagaattcaatctgtagaccaagttggccttgaactcagagat
cacctgcctatgcctctccagtgctaggataaagggcatgtgccactacc
accatcaccacccagctaaacttctcttttttctgtttagggaaatttaa
aaatttttggaaaaaaaaaaaccaacagtagtacatgttttttgaaaaca
agcagagatgttgaatgtgtagctcagtggtagagggcttgctcagcaca
caaaagacctgagagagaactattgaactgaactcgagaacgctagtagg
ttccctggaaaagagcagataaaacaagaggtcaccaacaatgacattca
attcctcccaggcaagagtgccatgagtttctagatttcatatcctttgg
agtgtcctgaacaataaatatcaaggacttttcattagacgcaccacagt
tgagatttcagaaagctctaacaaacagattctttacttccagaggtctt
ttccaaaaataaaaaatatatcaaaccaaaa
gaattccaaatacttgggaagctgaggcaggaggacaacacattcaaggc
tgcctgacaacttaatgagcccctatctcagaataaaaagtaaaaagatg
tctgggataaagtctttgcttttctcccatggttgaaatggtaaactgta
tgcatatgcatatttatcaaaaattagaaaacaaaagagcttccctctcc
agcctccataggaaatgattccccatggccaaacaaaaactagagaaagc
cattagtcttctctaagccttgatgttggttccgacagtcccaggccagg
tggagtcattcacgtcaaagttctgtgtcaccaaactgaaggaagagttg
acctgagagctcaggattagagagagaattagcagctttcccaacagacc
cagggaaaatgagctgataataaagtcccttccgtctgttaaccttcaca
caaaagaagcaacctggaatatcccagtgttaactaatccattatttcct
tgtgctgttctgactcctgctcctgccttgcaaggaaaaaagtttggaaa
tgactaacttccttttgttcttgtttctctcctcttttgtctaggtctac
aaaccaacccctttcctgttctgcttgttatcaaaatcttgattcaacac
agtatctcatttccctgcattccatgaaaattaggaaatgaaaattaata
agggaactagatttactgcttggccagaagcaggttgctactaatttctc
cccaccaggcctgaggagagtgtacagaaatccatgggacaacagccaga
agatacatagacggaattgtgagatagttgtctcaaagggaataagaatg
gtttattctggagccaaataatgaatggtcacgccaaagaacacagattc
agttatcctcaaaatcgcattccaacacagtaacaattattgaagtttct
atagcacagaacaaggaaagtgataaaccagtgtcatgaaagataacgca
gcagtgggaggtacctttggtggagcatgccaggtattacactggagaaa
ttatggtcaggcaacagatctagttttaaagtcatttactggggagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_123129136_123130174
seq2: B6Ng01-106J03.b_45_1075

seq1  GAATTCTCAAGATCTGTGCTCAGAGCTGCTGGCATAGCTGAGGGCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGATCTGTGCTCAGAGCTGCTGGCATAGCTGAGGGCCTGGA  50

seq1  AGTGTTCTAAAGATAGATTCAGAAAATGTATGCATCTAGAATGCTGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTAAAGATAGATTCAGAAAATGTATGCATCTAGAATGCTGGGAG  100

seq1  TCCAGCGCCTGCCAACTGCTCCTCCTACCTGCTGGATGTTTTCCAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCGCCTGCCAACTGCTCCTCCTACCTGCTGGATGTTTTCCAAATCT  150

seq1  GAGCAGACCACTGACGGACCCTAGGTGAGCTGGCCAGCTCCTTCCATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACCACTGACGGACCCTAGGTGAGCTGGCCAGCTCCTTCCATGAA  200

seq1  GTTCCTAGCTCATTCGTCTATCTCTCACTTCTAAACTCTGACCACATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAGCTCATTCGTCTATCTCTCACTTCTAAACTCTGACCACATCTG  250

seq1  CCATCTGAGGAAAACTTTGAAAATTGACTTATTAAACAAGATAAAGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGAGGAAAACTTTGAAAATTGACTTATTAAACAAGATAAAGTAGC  300

seq1  ATGGTGGGGAAAGACTATATAGGAGAAGATGAAAGAGCAAAGTCAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGGAAAGACTATATAGGAGAAGATGAAAGAGCAAAGTCAGATAA  350

seq1  AAATGATTGCTAACTCCCTTAGCAAGATATAGGTAACATTGTAGCTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTGCTAACTCCCTTAGCAAGATATAGGTAACATTGTAGCTATGG  400

seq1  AACAGAAACAGATTATAATAAAACAGTTTAGGGAAATTTGTTTAGTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAACAGATTATAATAAAACAGTTTAGGGAAATTTGTTTAGTTTGG  450

seq1  TTTTATTCTTGTTTTTGTTTTTCAAGGCAGACTTTCTACCTCTACCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTTGTTTTTGTTTTTCAAGGCAGACTTTCTACCTCTACCCCTG  500

seq1  GCTTTTCTAGAATTCAATCTGTAGACCAAGTTGGCCTTGAACTCAGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTAGAATTCAATCTGTAGACCAAGTTGGCCTTGAACTCAGAGAT  550

seq1  CACCTGCCTATGCCTCTCCAGTGCTAGGATAAAGGGCATGTGCCACTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTATGCCTCTCCAGTGCTAGGATAAAGGGCATGTGCCACTACC  600

seq1  ACCATCACCACCCAGCTAAACTTCTCTTTTTTCTGTTTAGGGAAATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACCACCCAGCTAAACTTCTCTTTTTTCTGTTTAGGGAAATTTAA  650

seq1  AAATTTTTGGAAAAAAAAAAACCAACAGTAGTACATGTTTTTTGAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTGGAAAAAAAAAAACCAACAGTAGTACATGTTTTTTGAAAACA  700

seq1  AGCAGAGATGTTGAATGTGTAGCTCAGTGGTAGAGGGCTTGCTCAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGATGTTGAATGTGTAGCTCAGTGGTAGAGGGCTTGCTCAGCACA  750

seq1  CAAAAGACCTGAGAGAGAACTATTGAACTGAACTCGAGAACGCTAGTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACCTGAGAGAGAACTATTGAACTGAACTCGAGAACGCTAGTAGG  800

seq1  TTCCCTGGAAAAGAGCAGATAAAACAAGAGGTCACCAACAATGACATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGAAAAGAGCAGATAAAACAAGAGGTCACCAACAATGACATTCA  850

seq1  ATTCCTCCCAGGCAAGAGTGCCATGAGTTTCTAGATTTCATATCCTATGG  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTCCTCCCAGGCAAGAGTGCCATGAGTTTCTAGATTTCATATCCTTTGG  900

seq1  AGTGTCCTGAACAATAAATATCAAGGAC-TTTCATTAAGACGCACCACAG  949
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  AGTGTCCTGAACAATAAATATCAAGGACTTTTCATT-AGACGCACCACAG  949

seq1  -TGAGATTTCAGAAAGCTCTAACAAACAGATTCTATAACTTCCAGAGGTC  998
       ||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  TTGAGATTTCAGAAAGCTCTAACAAACAGATTCT-TTACTTCCAGAGGTC  998

seq1  TTTCCAAAAAAAAAAAAAAAAAAAAAAAAACAAAACCAAAA  1039
      ||| |         ||||| |||||| | |  |||||||||
seq2  TTTTC--------CAAAAATAAAAAATATATCAAACCAAAA  1031

seq1: chr9_123267229_123268329
seq2: B6Ng01-106J03.g_69_1167 (reverse)

seq1  ACCCTTCCCCAGTAAATGACTTTAAAACTAGATCTGTTGCCTGA-CATAA  49
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACCC-TCCCCAGTAAATGACTTTAAAACTAGATCTGTTGCCTGACCATAA  49

seq1  TTTCT-CAGTGGTATACCTTGGCATGGCTCCACCAAAGGTACCTCCACTT  98
      ||||| |||||  ||||| |||||| ||||||||||||||||||||   |
seq2  TTTCTCCAGTGTAATACC-TGGCAT-GCTCCACCAAAGGTACCTCCCACT  97

seq1  GCTGCGTTATCTTTCATGACACTTGGTTTATCACTTTCCTTGTTCTGTTG  148
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  GCTGCGTTATCTTTCATGACAC-TGGTTTATCACTTTCCTTGTTCTG-TG  145

seq1  CTATAGAAACTTC-ATAATTGTTACTGTGTTGGAATGCGATTTTGAGGAT  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAACTTCAATAATTGTTACTGTGTTGGAATGCGATTTTGAGGAT  195

seq1  AACCTGAATCTGTGTTCTTTGGCGTGACCATTCA-TATTTGGCTCCAGAA  246
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AA-CTGAATCTGTGTTCTTTGGCGTGACCATTCATTATTTGGCTCCAGAA  244

seq1  TAAACCATTCTTATTCCCTTTGAGACAACTATCTCACAATTCCGTCTATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATTCTTATTCCCTTTGAGACAACTATCTCACAATTCCGTCTATG  294

seq1  TATCTTCTGGCTGTTGTCCCATGGATTTCTGTACACTCTCCTCAGGCCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTGGCTGTTGTCCCATGGATTTCTGTACACTCTCCTCAGGCCTG  344

seq1  GTGGGGAGAAATTAGTAGCAACCTGCTTCTGGCCAAGCAGTAAATCTAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGAAATTAGTAGCAACCTGCTTCTGGCCAAGCAGTAAATCTAGT  394

seq1  TCCCTTATTAATTTTCATTTCCTAATTTTCATGGAATGCAGGGAAATGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATTAATTTTCATTTCCTAATTTTCATGGAATGCAGGGAAATGAG  444

seq1  ATACTGTGTTGAATCAAGATTTTGATAACAAGCAGAACAGGAAAGGGGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGTTGAATCAAGATTTTGATAACAAGCAGAACAGGAAAGGGGTT  494

seq1  GGTTTGTAGACCTAGACAAAAGAGGAGAGAAACAAGAACAAAAGGAAGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAGACCTAGACAAAAGAGGAGAGAAACAAGAACAAAAGGAAGTT  544

seq1  AGTCATTTCCAAACTTTTTTCCTTGCAAGGCAGGAGCAGGAGTCAGAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTCCAAACTTTTTTCCTTGCAAGGCAGGAGCAGGAGTCAGAACA  594

seq1  GCACAAGGAAATAATGGATTAGTTAACACTGGGATATTCCAGGTTGCTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGAAATAATGGATTAGTTAACACTGGGATATTCCAGGTTGCTTC  644

seq1  TTTTGTGTGAAGGTTAACAGACGGAAGGGACTTTATTATCAGCTCATTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGAAGGTTAACAGACGGAAGGGACTTTATTATCAGCTCATTTT  694

seq1  CCCTGGGTCTGTTGGGAAAGCTGCTAATTCTCTCTCTAATCCTGAGCTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTCTGTTGGGAAAGCTGCTAATTCTCTCTCTAATCCTGAGCTCT  744

seq1  CAGGTCAACTCTTCCTTCAGTTTGGTGACACAGAACTTTGACGTGAATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAACTCTTCCTTCAGTTTGGTGACACAGAACTTTGACGTGAATGA  794

seq1  CTCCACCTGGCCTGGGACTGTCGGAACCAACATCAAGGCTTAGAGAAGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTGGCCTGGGACTGTCGGAACCAACATCAAGGCTTAGAGAAGAC  844

seq1  TAATGGCTTTCTCTAGTTTTTGTTTGGCCATGGGGAATCATTTCCTATGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTTTCTCTAGTTTTTGTTTGGCCATGGGGAATCATTTCCTATGG  894

seq1  AGGCTGGAGAGGGAAGCTCTTTTGTTTTCTAATTTTTGATAAATATGCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGAGAGGGAAGCTCTTTTGTTTTCTAATTTTTGATAAATATGCAT  944

seq1  ATGCATACAGTTTACCATTTCAACCATGGGAGAAAAGCAAAGACTTTATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACAGTTTACCATTTCAACCATGGGAGAAAAGCAAAGACTTTATC  994

seq1  CCAGACATCTTTTTACTTTTTATTCTGAGATAGGGGCTCATTAAGTTGTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATCTTTTTACTTTTTATTCTGAGATAGGGGCTCATTAAGTTGTC  1044

seq1  AGGCAGCCTTGAATGTGTTGTCCTCCTGCCTCAGCTTCCCAAGTATTTGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCTTGAATGTGTTGTCCTCCTGCCTCAGCTTCCCAAGTATTTGG  1094

seq1  AATTC  1101
      |||||
seq2  AATTC  1099