BAC Information

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BAC

Clone NameB6Ng01-106J11
Chromosome17 (Build37)9 (Build37)
Map Location 24,953,962 - 24,954,39879,709,026 - 79,709,403
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSrrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Downstream gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106J11.bB6Ng01-106J11.g
ACCDH914288DH914289
length154368
definitionDH914288|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J11, 5' end.DH914289|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,953,962 - 24,954,398)(79,709,026 - 79,709,403)
sequence
aattcccagcaaccacatggtggctgacaaccatctgtaatgggatctga
tgccctcttctggtgtgtctgaagatagcaacagtgtacttatatacata
aaataaataaatctgagagagagagagagagagagagagagaaagagaga
agag
ataacctgaccatttcttaagccttctcacttggttgtgtctgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcagtctccaaa
ttaatctcatccagatggataaagacaaattcactagtgggccaacagtg
aattagagtttgcatagtacaagtgttgctaatgtagatacacatactca
tttcaagatgaaatgtaaaatactgatttctgaagcacatactaattaga
aatgttaatgagatggtcaaggttgaaaaaacaggctaatgaagaagtag
ttcatcaccagggggtgggaggtggataggagggacccacaaaagcacag
tgcaaagtcatgctagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24953962_24954398
seq2: B6Ng01-106J11.b_57_205 (reverse)

seq1  CTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGACAGGGTTTTTCTGTCTCTGTGTGTCCCTGGCTATCCTGGAACTGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGTAGACCAGGCTGGCCTCAAATTCAGATATCTGCCTCTGCCTCTGCC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTGCCTCCTGAGTGCTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTTAAAGGTATGCACCAACTCTCCCTGGCTTCTAAGATCTTTCTTATG  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGCACCTATGAAGAGGGAATTCAACTGATACAAGAGTTTGATAATTCATT  300
                                            |  |   || ||
seq2  -------------------------------------CTCTTCTCTCTTT  13

seq1  CTCTCTCTCTCTCTCCTTTCTTTTTAAAAGAATTCTTTATTTTATGTATA  350
      |||||||||||||| || ||| | |   ||| || |||||||||||||||
seq2  CTCTCTCTCTCTCT-CTCTCTCTCTCTCAGATTTATTTATTTTATGTATA  62

seq1  TGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCCTCAGATCC  400
      | |||||||||| ||| |||||||||||||||||||||||| ||||||||
seq2  TAAGTACACTGTTGCTATCTTCAGACACACCAGAAGAGGGCATCAGATCC  112

seq1  CATTACAGATGGTTGTGAGCCACCATGTGGGTGCTGG  437
      |||||||||||||||| ||||||||||||| ||||||
seq2  CATTACAGATGGTTGTCAGCCACCATGTGGTTGCTGG  149

seq1: chr9_79709026_79709403
seq2: B6Ng01-106J11.g_66_439

seq1  GAATTCATAACCTGACCATTTCTTAAGCCTTCTCACTTGGTTGTGTCTGT  50
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  GAATTCATAACCTGACCATTTCTTAAGCCTTCTCACTTGGTTGTGTC---  47

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTC  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTC  96

seq1  AGTCTCCAAATTAATCTCATCCAGATGGATAAAGACAAATTCACTAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCAAATTAATCTCATCCAGATGGATAAAGACAAATTCACTAGTGG  146

seq1  GCCAACAGTGAATTAGAGTTTGCATAGTACAAGTGTTGCTAATGTAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGTGAATTAGAGTTTGCATAGTACAAGTGTTGCTAATGTAGATA  196

seq1  CACATACTCATTTCAAGATGAAATGTAAAATACTGATTTCTGAAGCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTCATTTCAAGATGAAATGTAAAATACTGATTTCTGAAGCACAT  246

seq1  ACTAATTAGAAATGTTAATGAGATGGTCAAGGCTGAAAAAACAGGCTAAT  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTAATTAGAAATGTTAATGAGATGGTCAAGGTTGAAAAAACAGGCTAAT  296

seq1  GAAGAAGTAGTTCATCACCAGGGGGTGGGAGGTGGATAGGAGGGACCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTAGTTCATCACCAGGGGGTGGGAGGTGGATAGGAGGGACCCAC  346

seq1  AAAAGCACAGTGCAAAGTCATGCTAGCA  378
      ||||||||||||||||||||||||||||
seq2  AAAAGCACAGTGCAAAGTCATGCTAGCA  374