BAC Information

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BAC

Clone NameB6Ng01-106N08
Chromosome9 (Build37)
Map Location 107,904,339 - 108,043,984
singlet/doubletdoublet
Overlap geneIhpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik
Downstream geneLOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106N08.bB6Ng01-106N08.g
ACCDH914461DH914462
length1,1641,149
definitionDH914461|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N08, 5' end.DH914462|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,904,339 - 107,905,517)(108,042,809 - 108,043,984)
sequence
gaattcttatgcaaaataagccggggaaaggggaagccgaaatcgaagag
gtagcacagacggctgtgcctcgggactggtgagagacaacgctgggaga
cgcttagaaaacactaactccggagctagaagagtagaaggacccatcgc
caccacttcctaagactgtgtgaccttggctcaggctcttttctgcgcct
cagtttcctcaccagttaactagggacgatcccaagcacagaggcagggg
acaaagcaaataccgtacctatgacattccctaagtgtgtgcgagaggat
gataaacgctgccagctcaaaaccgaaacgattgcgcaggtgagaaaacg
aagggctctccagcatcacccccatcgctgctaaaagctccactgctagc
aaacctgagaatggcgcgcatgcgtcaattcctgccgtcacagtcacgtg
ccccaggcattctgcacgagaggcacgccctgactgacggaacagttgac
gaatcaacgcgaagaactccttcaggcgtcccaagaagaggctattgatt
ggagataacctcagttaggggcgggttctttgctgtccttggttactatg
acgcccggcccccgccccctcggctggccgccatcttgttgttgatccgt
acccagtgggcagcgccaggagctggaccgagcggccggtgaggggccgc
tgctgcggggctcagccaccagcgccgcctgccaggggggcgggccgaga
cctggaggcccggggggcccagctcccgtggggagccttgggcgcccgct
gcccgagtcgggccggtgagtgacaggagtcgggccaaaagacccgcccg
acacccacggcgagggtggcggcgggcgcggggttgttgctggcgcgcgt
aggtagggtcggggacttggggcgagcatcactggaacatcattcagcat
cttggttggcttcgccgagcctccagatgttgacacggaggctgggtggg
cagcccggtggaggtcggagagccctgagccctgggtacgtcggcgggta
ccgggaaactgctttcagaccgaatccctgggatctgagagccggcgtgt
gaagactgtttgctgcagcctgtctccggcggtacgtcctccaaatcacg
cgataaacttacgt
gaattcaagtcatccaaagatgctgtcaggagcggttctaggtggtgggc
gtgatactggtttgcacacgacactcttgtgccttcctctgccatgctga
gcatgctctgacagcctctgagccttccttaagtctagcttgctctttca
cctcagggagagcagcttgtcctttagtgtagagctctcctcaccttcct
tttgaccgtggcggtatgtccggtagtgatttgtttacacatctgtctct
aacctagactgaggattggatccgtgtctgatttgctttttgaaaaattc
attttaattaaatattgagtaggtattcataaagactataagaagactta
taaaatatgtatgtatgtaaagagtaaccatgtgcgcacctggaggcttg
acccgcctcgtaggaactcaagagcctcaggtgcgtcccaccctttaacg
ttgccatatcatgttgccatcaaaaaagtttagtcaggaaccagtcaagt
gcccccacccccattcacaatgggaatctcggaatgtttgaaataagctt
gttctttttgtgctgggctgaattcattaactctcctcagccgttgtccg
tagtgtgaaggttgggtatgcccgtaagatcaaaaaaacaggtcaaagga
cctagaaccaaggtcagtgtaaacaactgaaagagaggcaggcagaaaga
aggaagcctgttgttagagtctatgtctccattgctaatctgtgagtctg
ttgctaagcaaactccttatgaaatgctcataactggacggcatcgctga
ctgattgggccccggcttcctgagctcgccaaaccattcacacatctttc
cgttcatttttgtgtgcccagtgactatccgctgtgtggagcaccgtgct
gggccctgggtgcagcaaggagcaaaccagccacaggcctctagtttgtg
cagtttgtgcaggcccttagtatgcacagcgtttctaagacagtacttgt
gatacaatgttgagttcaaagtcacttgagcagtcacagttctatagtca
cacctaatctagtggggggcagagcagagttgaggccaagtggctacaga
aatgaactttcaagtgtcccaaagtctgggctgtcacagccaccaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107904339_107905517
seq2: B6Ng01-106N08.b_46_1209

seq1  GAATTCTTATGCAAAATAAGCCGGGGAAAGGGGAAGCCGAAATCGAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGCAAAATAAGCCGGGGAAAGGGGAAGCCGAAATCGAAGAG  50

seq1  GTAGCACAGACGGCTGTGCCTCGGGACTGGTGAGAGACAACGCTGGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACAGACGGCTGTGCCTCGGGACTGGTGAGAGACAACGCTGGGAGA  100

seq1  CGCTTAGAAAACACTAACTCCGGAGCTAGAAGAGTAGAAGGACCCATCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTAGAAAACACTAACTCCGGAGCTAGAAGAGTAGAAGGACCCATCGC  150

seq1  CACCACTTCCTAAGACTGTGTGACCTTGGCTCAGGCTCTTTTCTGCGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTCCTAAGACTGTGTGACCTTGGCTCAGGCTCTTTTCTGCGCCT  200

seq1  CAGTTTCCTCACCAGTTAACTAGGGACGATCCCAAGCACAGAGGCAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTCACCAGTTAACTAGGGACGATCCCAAGCACAGAGGCAGGGG  250

seq1  ACAAAGCAAATACCGTACCTATGACATTCCCTAAGTGTGTGCGAGAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCAAATACCGTACCTATGACATTCCCTAAGTGTGTGCGAGAGGAT  300

seq1  GATAAACGCTGCCAGCTCAAAACCGAAACGATTGCGCAGGTGAGAAAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACGCTGCCAGCTCAAAACCGAAACGATTGCGCAGGTGAGAAAACG  350

seq1  AAGGGCTCTCCAGCATCACCCCCATCGCTGCTAAAAGCTCCACTGCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTCTCCAGCATCACCCCCATCGCTGCTAAAAGCTCCACTGCTAGC  400

seq1  AAACCTGAGAATGGCGCGCATGCGTCAATTCCTGCCGTCACAGTCACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGAGAATGGCGCGCATGCGTCAATTCCTGCCGTCACAGTCACGTG  450

seq1  CCCCAGGCATTCTGCACGAGAGGCACGCCCTGACTGACGGAACAGTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCATTCTGCACGAGAGGCACGCCCTGACTGACGGAACAGTTGAC  500

seq1  GAATCAACGCGAAGAACTCCTTCAGGCGTCCCAAGAAGAGGCTATTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAACGCGAAGAACTCCTTCAGGCGTCCCAAGAAGAGGCTATTGATT  550

seq1  GGAGATAACCTCAGTTAGGGGCGGGTTCTTTGCTGTCCTTGGTTACTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAACCTCAGTTAGGGGCGGGTTCTTTGCTGTCCTTGGTTACTATG  600

seq1  ACGCCCGGCCCCCGCCCCCTCGGCTGGCCGCCATCTTGTTGTTGATCCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCGGCCCCCGCCCCCTCGGCTGGCCGCCATCTTGTTGTTGATCCGT  650

seq1  ACCCAGTGGGCAGCGCCAGGAGCTGGACCGAGCGGCCGGTGAGGGGCCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGGGCAGCGCCAGGAGCTGGACCGAGCGGCCGGTGAGGGGCCGC  700

seq1  TGCTGCGGGGCTCAGCCACCAGCGCCGCCTGCCAGGGGGGCGGGCCGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCGGGGCTCAGCCACCAGCGCCGCCTGCCAGGGGGGCGGGCCGAGA  750

seq1  CCTGGAGGCCCGGGGGGCCCAGCTCCCGTGGGGAGCCTTGGGCGCCCGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGCCCGGGGGGCCCAGCTCCCGTGGGGAGCCTTGGGCGCCCGCT  800

seq1  GCCCGAGTCGGGCCGGTGAGTGACAGGAGTCGGGCCAAAAGACCCGCCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAGTCGGGCCGGTGAGTGACAGGAGTCGGGCCAAAAGACCCGCCCG  850

seq1  ACACCCACGGCGAGGGTGGCGGCGGGCGCGGGGTTGTTGCTGGCGCGCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACGGCGAGGGTGGCGGCGGGCGCGGGGTTGTTGCTGGCGCGCGT  900

seq1  AGGTAGGGTC-GGGACTTGGGGCGAGCATCACTGGAACATCATTCCAGCA  949
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AGGTAGGGTCGGGGACTTGGGGCGAGCATCACTGGAACATCATT-CAGCA  949

seq1  TCCTGGTTGGCCTTCCGCCGAGCCTCCCAGATGTTGACACGGAGGCTGGG  999
      || ||||||||  | |||||||||| ||||||||||||||||||||||||
seq2  TCTTGGTTGGC--TTCGCCGAGCCT-CCAGATGTTGACACGGAGGCTGGG  996

seq1  TGGGCAGCCCGGGTGGAGGTCGGAGAGCCCTGAGCCCTGGGACCGGCCGG  1049
      |||||||||| ||||||||||||||||||||||||||||||  | | |||
seq2  TGGGCAGCCC-GGTGGAGGTCGGAGAGCCCTGAGCCCTGGGTAC-GTCGG  1044

seq1  CGGGGTACCGGGAAACCTGCCTTTCAGACCGAATCCCTGGGTGCCTGAGA  1099
      | ||||||||||||| ||| |||||||||||||||||||||   ||||||
seq2  C-GGGTACCGGGAAA-CTG-CTTTCAGACCGAATCCCTGGG-ATCTGAGA  1090

seq1  GCCGGCGTGCTGAGACGTGGTTGCTGCCAGCTCGTTCTCCCGGCCGTAAC  1149
      |||||||||   |||| || |||||| |||| |  ||| ||||| || ||
seq2  GCCGGCGTGTGAAGAC-TGTTTGCTG-CAGC-CTGTCT-CCGGCGGT-AC  1135

seq1  GTTCCTCCAAATCA-GCGATAAACGTTACGT  1179
      | |||||||||||| ||||||||| ||||||
seq2  G-TCCTCCAAATCACGCGATAAAC-TTACGT  1164

seq1: chr9_108042809_108043984
seq2: B6Ng01-106N08.g_63_1211 (reverse)

seq1  TCCTTGGGTGGCTGCTGACAGCCACAGGACTTGTGGAGACACTGGGAAAG  50
      ||||| |||||||| |||||||| || ||||| ||| ||||||  |||||
seq2  TCCTT-GGTGGCTG-TGACAGCC-CA-GACTT-TGG-GACACT-TGAAAG  43

seq1  TTTCATTTCTGTAGCCCACTTTGGCCTCAAACTCCTGGCTCTGCCCCCCA  100
       ||||||||||||| |||| |||||||| |||||   |||||||||||||
seq2  -TTCATTTCTGTAG-CCAC-TTGGCCTC-AACTC--TGCTCTGCCCCCCA  87

seq1  CTAAGATTAGGTGTGAACTATAGAACCTGTGACTGGCTCAAAGTGACTTT  150
      || |||||||||||| ||||||||| |||||||| |||| ||||||||||
seq2  CT-AGATTAGGTGTG-ACTATAGAA-CTGTGACT-GCTC-AAGTGACTTT  132

seq1  GAACTCAACATTGTATCACAAGTTACTGGTTCCTTAGAAACGCTGTGCAT  200
      |||||||||||||||||||||| |||||    ||||||||||||||||||
seq2  GAACTCAACATTGTATCACAAG-TACTG---TCTTAGAAACGCTGTGCAT  178

seq1  ACTAAGGGCCTGGCACAAACTGGCACAAACCTAGAAGGCCTGTGGCTGGT  250
      ||||||||||| ||||||||| ||||||| |||| |||||||||||||||
seq2  ACTAAGGGCCT-GCACAAACT-GCACAAA-CTAG-AGGCCTGTGGCTGGT  224

seq1  TTGCTCCTTGCTGCACCCCAGGGCCCAGCACGGTGCTCCACACAGCGGAT  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTTGCTGCA-CCCAGGGCCCAGCACGGTGCTCCACACAGCGGAT  273

seq1  AGTCACTGGGCACACAAAAATGAACGGAAAGATGTGTGAATGGTTTGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGGGCACACAAAAATGAACGGAAAGATGTGTGAATGGTTTGGCG  323

seq1  AGCTCAGGAAGCCGGGGCCCAATCAGTCAGCGATGCCGTCCAGTTATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGAAGCCGGGGCCCAATCAGTCAGCGATGCCGTCCAGTTATGAG  373

seq1  CATTTCATAAGGAGTTTGCTTAGCAACAGACTCACAGATTAGCAATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATAAGGAGTTTGCTTAGCAACAGACTCACAGATTAGCAATGGAG  423

seq1  ACATAGACTCTAACAACAGGCTTCCTTCTTTCTGCCTGCCTCTCTTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACTCTAACAACAGGCTTCCTTCTTTCTGCCTGCCTCTCTTTCAG  473

seq1  TTGTTTACACTGACCTTGGTTCTAGGTCCTTTGACCTGTTTTTTTGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACACTGACCTTGGTTCTAGGTCCTTTGACCTGTTTTTTTGATCT  523

seq1  TACGGGCATACCCAACCTTCACACTACGGACAACGGCTGAGGAGAGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGCATACCCAACCTTCACACTACGGACAACGGCTGAGGAGAGTTAA  573

seq1  TGAATTCAGCCCAGCACAAAAAGAACAAGCTTATTTCAAACATTCCGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAGCCCAGCACAAAAAGAACAAGCTTATTTCAAACATTCCGAGA  623

seq1  TTCCCATTGTGAATGGGGGTGGGGGCACTTGACTGGTTCCTGACTAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTGTGAATGGGGGTGGGGGCACTTGACTGGTTCCTGACTAAACT  673

seq1  TTTTTGATGGCAACATGATATGGCAACGTTAAAGGGTGGGACGCACCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATGGCAACATGATATGGCAACGTTAAAGGGTGGGACGCACCTGA  723

seq1  GGCTCTTGAGTTCCTACGAGGCGGGTCAAGCCTCCAGGTGCGCACATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGAGTTCCTACGAGGCGGGTCAAGCCTCCAGGTGCGCACATGGT  773

seq1  TACTCTTTACATACATACATATTTTATAAGTCTTCTTATAGTCTTTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTACATACATACATATTTTATAAGTCTTCTTATAGTCTTTATGA  823

seq1  ATACCTACTCAATATTTAATTAAAATGAATTTTTCAAAAAGCAAATCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTACTCAATATTTAATTAAAATGAATTTTTCAAAAAGCAAATCAGA  873

seq1  CACGGATCCAATCCTCAGTCTAGGTTAGAGACAGATGTGTAAACAAATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATCCAATCCTCAGTCTAGGTTAGAGACAGATGTGTAAACAAATCA  923

seq1  CTACCGGACATACCGCCACGGTCAAAAGGAAGGTGAGGAGAGCTCTACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGGACATACCGCCACGGTCAAAAGGAAGGTGAGGAGAGCTCTACAC  973

seq1  TAAAGGACAAGCTGCTCTCCCTGAGGTGAAAGAGCAAGCTAGACTTAAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACAAGCTGCTCTCCCTGAGGTGAAAGAGCAAGCTAGACTTAAGG  1023

seq1  AAGGCTCAGAGGCTGTCAGAGCATGCTCAGCATGGCAGAGGAAGGCACAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAGAGGCTGTCAGAGCATGCTCAGCATGGCAGAGGAAGGCACAA  1073

seq1  GAGTGTCGTGTGCAAACCAGTATCACGCCCACCACCTAGAACCGCTCCTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCGTGTGCAAACCAGTATCACGCCCACCACCTAGAACCGCTCCTG  1123

seq1  ACAGCATCTTTGGATGACTTGAATTC  1176
      ||||||||||||||||||||||||||
seq2  ACAGCATCTTTGGATGACTTGAATTC  1149